Wall clock time and date at job start Tue Mar 31 2020 00:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48494 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47067 * 300.00379 * 3 2 1 6 6 H 1.48502 * 109.46918 * 60.00294 * 3 2 1 7 7 C 1.38810 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00317 * 163.05966 * 7 2 1 9 9 N 1.36940 * 119.99637 * 343.06027 * 7 2 1 10 10 C 1.46926 * 120.62999 * 331.83932 * 9 7 2 11 11 C 1.53200 * 108.77511 * 233.63219 * 10 9 7 12 12 C 1.53039 * 109.31321 * 305.36605 * 11 10 9 13 13 C 1.50701 * 109.46081 * 181.38322 * 12 11 10 14 14 O 1.21278 * 119.99849 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99911 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99828 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47241 * 180.02562 * 16 15 13 18 18 C 1.34510 * 125.78384 * 90.00340 * 17 16 15 19 19 C 1.41389 * 106.83683 * 180.02562 * 18 17 16 20 20 C 1.34506 * 106.84210 * 359.97438 * 19 18 17 21 21 O 1.34297 * 125.79023 * 269.69567 * 17 16 15 22 22 C 1.53040 * 109.52612 * 61.37292 * 12 11 10 23 23 C 1.46930 * 120.62897 * 151.86747 * 9 7 2 24 24 H 0.96998 * 119.99996 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58313 * 113.84641 * 10 9 7 26 26 H 1.09002 * 109.70490 * 353.48798 * 10 9 7 27 27 H 1.08995 * 109.49365 * 185.41382 * 11 10 9 28 28 H 1.09000 * 109.49815 * 65.31767 * 11 10 9 29 29 H 1.09002 * 109.46228 * 301.36449 * 12 11 10 30 30 H 0.97004 * 119.99885 * 0.02562 * 15 13 12 31 31 H 1.09004 * 109.47611 * 300.00825 * 16 15 13 32 32 H 1.09002 * 109.46922 * 60.00573 * 16 15 13 33 33 H 1.07999 * 126.58444 * 0.03457 * 18 17 16 34 34 H 1.08003 * 126.57972 * 179.97438 * 19 18 17 35 35 H 1.07996 * 125.79416 * 180.02562 * 20 19 18 36 36 H 1.08993 * 109.50158 * 58.57665 * 22 12 11 37 37 H 1.09004 * 109.50148 * 178.68097 * 22 12 11 38 38 H 1.08998 * 109.58300 * 246.15024 * 23 9 7 39 39 H 1.08993 * 109.58889 * 6.43500 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2731 9 7 1.3702 -2.3624 0.3445 10 6 0.2265 -2.3408 1.2665 11 6 0.4986 -3.3199 2.4129 12 6 0.8137 -4.7014 1.8346 13 6 1.0486 -5.6753 2.9603 14 8 0.9722 -5.3014 4.1115 15 7 1.3437 -6.9618 2.6878 16 6 1.5716 -7.9087 3.7822 17 6 1.8819 -9.2691 3.2130 18 6 3.1070 -9.7331 2.9075 19 6 2.9351 -11.0436 2.4054 20 6 1.6154 -11.3022 2.4346 21 8 0.9830 -10.2259 2.9301 22 6 2.0689 -4.6170 0.9632 23 6 1.8145 -3.6528 -0.1999 24 1 -0.4850 0.8400 0.0004 25 1 -0.6766 -2.6417 0.7356 26 1 0.0967 -1.3355 1.6676 27 1 -0.3817 -3.3853 3.0522 28 1 1.3484 -2.9680 2.9979 29 1 -0.0264 -5.0418 1.2291 30 1 1.4052 -7.2608 1.7670 31 1 2.4114 -7.5685 4.3882 32 1 0.6772 -7.9693 4.4023 33 1 4.0424 -9.2059 3.0236 34 1 3.7140 -11.7093 2.0639 35 1 1.1447 -12.2211 2.1179 36 1 2.9037 -4.2527 1.5619 37 1 2.3064 -5.6057 0.5704 38 1 1.0408 -4.0608 -0.8503 39 1 2.7335 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058363632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:44 Heat of formation + Delta-G solvation = -27.050797 kcal Electronic energy + Delta-G solvation = -21333.414267 eV Core-core repulsion = 18049.197004 eV Total energy + Delta-G solvation = -3284.217263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.53835 -41.11033 -38.65045 -36.15554 -35.01949 -33.91384 -32.51769 -31.76015 -31.01596 -27.91407 -26.58727 -24.38216 -23.71532 -22.69846 -21.77413 -21.55975 -20.65491 -18.93929 -18.55496 -17.79192 -17.31973 -16.78660 -16.50659 -16.34047 -15.60622 -15.44917 -15.33186 -14.89396 -14.58904 -14.44633 -14.13968 -13.76137 -13.73333 -13.52889 -13.21710 -12.99547 -12.94655 -12.63665 -12.58721 -12.04643 -12.00178 -11.82133 -11.44947 -11.27116 -10.94336 -10.76990 -10.54061 -10.21553 -9.51608 -8.67397 -7.86665 -5.31668 0.62119 1.46297 1.48905 1.58718 1.59084 1.63095 1.96602 2.39057 2.52161 3.28636 3.60765 3.69347 3.77845 3.96388 3.97567 4.11822 4.13949 4.35477 4.43028 4.50456 4.56248 4.70930 4.85331 4.89438 4.95959 5.01202 5.07788 5.12127 5.14415 5.18073 5.29627 5.36915 5.53012 5.57370 5.66243 5.74123 6.16827 6.40669 6.45378 7.15897 7.17462 7.87691 8.38668 9.20075 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039534 B = 0.003280 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.077158 B = 8535.538706 C = 8784.882174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.613 5.613 10 C 0.179 3.821 11 C -0.106 4.106 12 C -0.091 4.091 13 C 0.528 3.472 14 O -0.577 6.577 15 N -0.716 5.716 16 C 0.204 3.796 17 C -0.053 4.053 18 C -0.186 4.186 19 C -0.230 4.230 20 C -0.028 4.028 21 O -0.190 6.190 22 C -0.108 4.108 23 C 0.141 3.859 24 H 0.249 0.751 25 H 0.005 0.995 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.415 0.585 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.239 0.761 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.027 0.973 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -23.827 3.463 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.337 5.337 10 C 0.054 3.946 11 C -0.146 4.146 12 C -0.112 4.112 13 C 0.316 3.684 14 O -0.457 6.457 15 N -0.369 5.369 16 C 0.082 3.918 17 C -0.103 4.103 18 C -0.206 4.206 19 C -0.249 4.249 20 C -0.095 4.095 21 O -0.087 6.087 22 C -0.147 4.147 23 C 0.016 3.984 24 H 0.059 0.941 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.252 0.748 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.178 0.822 34 H 0.188 0.812 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.253 -23.410 4.324 24.183 hybrid contribution 0.293 1.005 -0.387 1.116 sum 4.547 -22.405 3.938 23.198 Atomic orbital electron populations 1.70175 1.06640 1.25744 1.55503 1.25794 0.96060 1.01509 1.01382 0.85248 0.78716 0.80031 0.76708 1.19032 1.21751 1.21984 1.19555 0.92896 0.86104 1.40626 0.91441 1.44349 1.35919 1.02694 1.50692 1.20563 0.88170 0.97265 0.88645 1.21789 1.00513 0.94368 0.97910 1.21188 1.01200 0.93747 0.95074 1.20907 0.74626 0.82718 0.90186 1.90664 1.52616 1.78759 1.23631 1.45987 1.71923 1.08220 1.10783 1.19506 1.03190 0.80414 0.88729 1.22157 0.88187 0.91837 1.08110 1.22003 0.98118 0.96892 1.03552 1.22222 0.97621 0.97679 1.07332 1.24905 0.92668 0.91487 1.00453 1.84043 1.38271 1.22664 1.63688 1.21886 0.95180 1.00715 0.96920 1.21089 0.98020 0.85530 0.93806 0.94145 0.97705 0.93000 0.92411 0.93909 0.87513 0.74849 0.88185 0.90568 0.82206 0.81170 0.74535 0.92965 0.88367 0.95506 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 11.19 21.65 0.24 -55.72 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.96 45.51 29.59 68.60 2.03 47.54 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.26 -14.48 9.58 84.03 0.81 -13.67 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -30.73 2.99 -699.07 -2.09 -32.83 16 10 C 0.18 8.87 5.30 86.37 0.46 9.33 16 11 C -0.11 -4.36 4.65 30.67 0.14 -4.22 16 12 C -0.09 -2.92 2.49 -11.51 -0.03 -2.95 16 13 C 0.53 16.02 7.15 87.66 0.63 16.65 16 14 O -0.58 -22.03 15.98 -3.02 -0.05 -22.08 16 15 N -0.72 -15.83 5.43 -466.79 -2.54 -18.37 16 16 C 0.20 4.16 6.20 85.63 0.53 4.69 16 17 C -0.05 -0.97 6.69 24.83 0.17 -0.81 16 18 C -0.19 -2.95 10.81 22.19 0.24 -2.71 16 19 C -0.23 -2.96 10.91 22.19 0.24 -2.72 16 20 C -0.03 -0.34 12.09 66.97 0.81 0.47 16 21 O -0.19 -3.49 10.65 -2.50 -0.03 -3.52 16 22 C -0.11 -3.29 5.27 30.67 0.16 -3.13 16 23 C 0.14 5.46 6.52 86.36 0.56 6.02 16 24 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.05 2.94 6.06 -2.39 -0.01 2.93 16 27 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 28 H 0.04 1.90 8.13 -2.39 -0.02 1.88 16 29 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.41 7.32 7.86 -92.71 -0.73 6.59 16 31 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.24 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 2.13 7.53 -2.38 -0.02 2.11 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 2.29 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -71.45 324.53 3.02 -68.43 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.32 Total: 12.12 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.13 Total: 4.42 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.39 Total: -106.91 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.08 Total: -25.60 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.45 3.02 -68.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058363632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.377 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds