Wall clock time and date at job start Mon Mar 30 2020 23:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.20823 * 120.00322 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99495 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99756 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47007 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.46644 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99636 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99952 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00234 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47114 * 60.00017 * 18 16 14 20 20 H 1.48492 * 109.47596 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47051 * 300.00733 * 18 16 14 22 22 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 23 23 C 1.38145 * 120.05942 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 31 31 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 32 32 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 33 33 H 1.08999 * 109.47028 * 300.00132 * 12 11 9 34 34 H 1.09001 * 109.47111 * 60.00304 * 12 11 9 35 35 H 1.08999 * 109.47217 * 299.99873 * 13 12 11 36 36 H 1.09001 * 109.47054 * 60.00126 * 13 12 11 37 37 H 0.97004 * 119.99762 * 180.02562 * 17 16 14 38 38 H 1.08008 * 119.97547 * 179.97438 * 22 7 6 39 39 H 1.08000 * 120.03441 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3088 2.0485 2.3413 11 8 9.3957 2.3243 1.6689 12 6 9.8034 2.3780 3.0615 13 6 11.3181 2.5784 3.1421 14 6 11.7410 2.6347 4.5875 15 1 11.0034 2.5369 5.3702 16 6 13.0699 2.8101 4.9106 17 7 13.9682 2.9287 3.9574 18 14 13.5944 2.8792 6.7021 19 1 13.2264 1.6076 7.3750 20 1 15.0644 3.0738 6.7804 21 1 12.9090 4.0117 7.3751 22 6 5.2549 2.9853 0.0010 23 6 3.8850 2.8070 0.0003 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7884 -0.5724 0.0117 30 1 6.2281 -0.2456 0.0032 31 1 8.0671 1.2509 -0.5113 32 1 7.8338 3.0155 -0.5117 33 1 9.3004 3.2093 3.5555 34 1 9.5332 1.4446 3.5554 35 1 11.8214 1.7473 2.6480 36 1 11.5879 3.5119 2.6483 37 1 14.9032 3.0517 4.1847 38 1 5.6690 3.9828 0.0011 39 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:30 Heat of formation + Delta-G solvation = -119.188259 kcal Electronic energy + Delta-G solvation = -20207.160160 eV Core-core repulsion = 16886.654766 eV Total energy + Delta-G solvation = -3320.505394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48933 -39.79023 -37.88615 -35.99208 -33.34907 -32.87904 -31.58888 -31.04232 -30.22465 -27.36681 -24.92641 -24.29738 -22.49902 -21.82799 -20.91777 -20.21225 -18.48618 -17.34622 -16.42261 -16.38957 -16.13571 -16.00836 -15.75010 -15.14715 -14.57280 -14.48400 -13.88793 -13.66282 -13.62669 -13.28346 -12.93337 -12.71123 -12.35946 -12.15363 -12.06896 -11.88390 -11.71410 -11.18551 -11.06593 -10.96407 -10.92032 -10.71781 -10.68664 -10.17588 -9.62049 -9.60319 -9.30597 -9.11320 -8.43601 -8.25012 -6.09859 -4.14213 1.21652 1.25054 2.63217 2.93860 3.19311 3.30430 3.34383 3.38243 3.77220 4.40210 4.52345 4.55663 4.60152 4.70609 4.73699 4.87923 5.06725 5.15438 5.21328 5.26494 5.34462 5.40562 5.44091 5.49760 5.59259 5.66180 5.89175 6.09059 6.11276 6.14383 6.19832 6.47545 6.60826 6.65586 7.04539 7.22016 7.56983 7.63261 7.87711 8.21464 8.30562 8.91115 9.50014 11.01543 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040419 B = 0.002492 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.578772 B =11233.005286 C =11547.161328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.208 4.208 6 C -0.062 4.062 7 C -0.108 4.108 8 C -0.072 4.072 9 C 0.453 3.547 10 O -0.511 6.511 11 O -0.359 6.359 12 C 0.075 3.925 13 C 0.025 3.975 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.063 4.063 23 C -0.151 4.151 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.130 0.870 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.533 -4.899 -12.445 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.226 4.226 6 C -0.080 4.080 7 C -0.108 4.108 8 C -0.110 4.110 9 C 0.296 3.704 10 O -0.400 6.400 11 O -0.275 6.275 12 C 0.003 3.997 13 C -0.013 4.013 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.081 4.081 23 C -0.170 4.170 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.691 -4.763 -12.164 26.183 hybrid contribution 0.440 -0.247 1.176 1.280 sum -22.251 -5.010 -10.988 25.317 Atomic orbital electron populations 1.21775 0.92771 1.02838 1.03519 1.22780 0.95831 0.82075 1.01472 1.86055 1.19200 1.29244 1.88723 1.18988 0.82092 0.94231 0.96371 1.21158 0.94171 0.97966 1.09340 1.20804 0.94390 0.96624 0.96215 1.19238 0.93731 0.93563 1.04262 1.20244 0.92285 1.06286 0.92170 1.23464 0.81573 0.73316 0.92094 1.90647 1.56901 1.45501 1.46923 1.86520 1.25019 1.81727 1.34273 1.23621 0.99689 1.00850 0.75543 1.19167 0.85752 0.98622 0.97712 1.20949 0.93078 1.51219 0.91263 0.92337 1.24986 0.96489 0.94912 0.97798 1.69966 1.01835 1.48899 1.32145 0.86526 0.77418 0.78758 0.84553 1.20081 1.21123 1.20071 1.20838 0.92147 0.98672 0.96402 1.20361 0.95047 0.94797 1.06772 0.91550 0.90387 0.91487 0.92044 0.91963 0.85540 0.85687 0.87043 0.86962 0.92386 0.92416 0.95370 0.95351 0.92664 0.85211 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.48 10.14 -19.41 -0.20 -3.67 16 4 C 0.13 1.51 6.69 -39.21 -0.26 1.25 16 5 C -0.21 -2.30 9.04 -39.43 -0.36 -2.65 16 6 C -0.06 -0.73 9.69 -39.61 -0.38 -1.11 16 7 C -0.11 -1.33 4.38 -104.60 -0.46 -1.78 16 8 C -0.07 -0.87 5.94 -29.03 -0.17 -1.04 16 9 C 0.45 7.86 7.95 36.01 0.29 8.15 16 10 O -0.51 -10.35 15.78 -18.75 -0.30 -10.64 16 11 O -0.36 -7.18 10.22 -39.24 -0.40 -7.58 16 12 C 0.08 1.71 5.40 37.16 0.20 1.91 16 13 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 14 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.06 -0.74 9.69 -39.61 -0.38 -1.12 16 23 C -0.15 -1.76 9.99 -39.43 -0.39 -2.15 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.39 7.68 -51.93 -0.40 0.00 16 28 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 29 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 30 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 34 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -33.07 339.71 -7.69 -40.76 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.73 Total: -3.21 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.90 Total: -11.57 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.89 Total: -21.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.07 -7.69 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.429 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds