Wall clock time and date at job start Mon Mar 30 2020 23:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.20823 * 120.00322 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99495 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99756 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47007 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.46644 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99636 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99952 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00234 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47114 * 60.00017 * 18 16 14 20 20 H 1.48492 * 109.47596 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47051 * 300.00733 * 18 16 14 22 22 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 23 23 C 1.38145 * 120.05942 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 31 31 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 32 32 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 33 33 H 1.08999 * 109.47028 * 300.00132 * 12 11 9 34 34 H 1.09001 * 109.47111 * 60.00304 * 12 11 9 35 35 H 1.08999 * 109.47217 * 299.99873 * 13 12 11 36 36 H 1.09001 * 109.47054 * 60.00126 * 13 12 11 37 37 H 0.97004 * 119.99762 * 180.02562 * 17 16 14 38 38 H 1.08008 * 119.97547 * 179.97438 * 22 7 6 39 39 H 1.08000 * 120.03441 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3088 2.0485 2.3413 11 8 9.3957 2.3243 1.6689 12 6 9.8034 2.3780 3.0615 13 6 11.3181 2.5784 3.1421 14 6 11.7410 2.6347 4.5875 15 1 11.0034 2.5369 5.3702 16 6 13.0699 2.8101 4.9106 17 7 13.9682 2.9287 3.9574 18 14 13.5944 2.8792 6.7021 19 1 13.2264 1.6076 7.3750 20 1 15.0644 3.0738 6.7804 21 1 12.9090 4.0117 7.3751 22 6 5.2549 2.9853 0.0010 23 6 3.8850 2.8070 0.0003 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7884 -0.5724 0.0117 30 1 6.2281 -0.2456 0.0032 31 1 8.0671 1.2509 -0.5113 32 1 7.8338 3.0155 -0.5117 33 1 9.3004 3.2093 3.5555 34 1 9.5332 1.4446 3.5554 35 1 11.8214 1.7473 2.6480 36 1 11.5879 3.5119 2.6483 37 1 14.9032 3.0517 4.1847 38 1 5.6690 3.9828 0.0011 39 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:30 Heat of formation + Delta-G solvation = -137.272583 kcal Electronic energy + Delta-G solvation = -20207.944355 eV Core-core repulsion = 16886.654766 eV Total energy + Delta-G solvation = -3321.289590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60137 -40.94619 -38.79365 -37.53048 -35.44308 -33.74604 -32.51855 -32.09786 -31.78232 -28.45454 -26.83636 -24.98972 -23.61906 -22.97278 -22.46813 -21.45078 -19.26680 -18.97710 -18.11855 -17.68876 -17.35037 -17.04170 -16.86667 -16.48638 -16.16073 -15.45761 -15.13475 -14.50955 -14.45563 -14.41616 -14.35775 -14.15058 -13.44066 -13.24823 -13.05730 -12.91736 -12.82753 -12.66733 -12.58626 -12.52062 -12.48969 -11.86167 -11.69637 -11.65168 -11.51373 -11.45357 -11.29443 -10.60863 -9.96943 -9.12095 -8.27032 -6.40294 0.32009 0.38456 1.25216 1.40741 1.44257 1.52228 1.86257 2.24697 2.40193 2.81521 3.06997 3.63689 3.78675 3.91892 3.99843 4.04472 4.10352 4.22126 4.28724 4.29691 4.34507 4.39118 4.49996 4.64183 4.70527 4.70925 4.88740 4.93166 5.05839 5.18150 5.24381 5.30408 5.35958 5.47211 5.58297 5.59430 5.75439 5.80416 6.06766 6.43941 6.72109 6.81421 7.29246 8.85158 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040419 B = 0.002492 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.578772 B =11233.005286 C =11547.161328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.119 3.881 5 C -0.213 4.213 6 C -0.072 4.072 7 C -0.126 4.126 8 C -0.061 4.061 9 C 0.452 3.548 10 O -0.542 6.542 11 O -0.366 6.366 12 C 0.091 3.909 13 C 0.031 3.969 14 C -0.552 4.552 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.925 5.925 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.071 4.071 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.268 0.732 38 H 0.143 0.857 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.388 -5.484 -12.378 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.073 3.927 5 C -0.231 4.231 6 C -0.090 4.090 7 C -0.126 4.126 8 C -0.098 4.098 9 C 0.297 3.703 10 O -0.432 6.432 11 O -0.283 6.283 12 C 0.018 3.982 13 C -0.007 4.007 14 C -0.590 4.590 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.564 5.564 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.088 4.088 23 C -0.184 4.184 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.161 0.839 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.571 -5.354 -12.116 27.038 hybrid contribution 0.598 -0.095 1.078 1.236 sum -22.973 -5.449 -11.038 26.064 Atomic orbital electron populations 1.21806 0.91395 1.04198 1.03195 1.23072 0.96980 0.80807 1.02219 1.86048 1.18763 1.31314 1.88576 1.19208 0.82705 0.94583 0.96174 1.21413 0.94024 0.98856 1.08836 1.21087 0.94993 0.97014 0.95884 1.19373 0.93809 0.94065 1.05338 1.20386 0.92170 1.08778 0.88436 1.24554 0.80008 0.71672 0.94055 1.90634 1.57170 1.46925 1.48452 1.86518 1.27134 1.82315 1.32288 1.23108 0.97151 1.00648 0.77324 1.18981 0.88308 0.96610 0.96759 1.21347 0.93767 1.51611 0.92255 0.91870 1.25964 0.96439 0.94133 1.02786 1.70086 1.02315 1.49430 1.34594 0.85382 0.77206 0.79238 0.78515 1.19098 1.20383 1.19129 1.21079 0.92308 0.99363 0.96094 1.20600 0.95389 0.95419 1.07013 0.91587 0.88173 0.92085 0.90790 0.91646 0.83534 0.84283 0.84360 0.84330 0.92517 0.92496 0.97412 0.97423 0.92311 0.83899 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -6.99 10.14 -92.39 -0.94 -7.92 16 4 C 0.12 2.69 6.69 22.51 0.15 2.84 16 5 C -0.21 -4.41 9.04 22.37 0.20 -4.21 16 6 C -0.07 -1.57 9.69 22.25 0.22 -1.35 16 7 C -0.13 -2.90 4.38 -19.85 -0.09 -2.99 16 8 C -0.06 -1.33 5.94 29.10 0.17 -1.16 16 9 C 0.45 15.25 7.95 71.24 0.57 15.82 16 10 O -0.54 -21.68 15.78 21.97 0.35 -21.33 16 11 O -0.37 -14.51 10.22 -51.36 -0.52 -15.04 16 12 C 0.09 4.15 5.40 71.98 0.39 4.54 16 13 C 0.03 1.66 5.35 29.85 0.16 1.82 16 14 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 15 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 16 C 0.01 0.34 5.46 84.65 0.46 0.80 16 17 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 18 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 C -0.07 -1.58 9.69 22.25 0.22 -1.37 16 23 C -0.17 -3.74 9.99 22.37 0.22 -3.52 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.82 7.68 -2.39 -0.02 0.80 16 28 H 0.07 0.84 7.65 -2.39 -0.02 0.83 16 29 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 30 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.14 2.32 8.08 -2.39 -0.02 2.30 16 32 H 0.14 2.33 8.08 -2.39 -0.02 2.32 16 33 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 34 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -71.12 339.71 6.26 -64.86 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.03 Total: 8.65 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.04 Total: -19.86 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.28 Total: -55.19 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.11 Total: -44.30 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.12 6.26 -64.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.413 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds