Wall clock time and date at job start Tue Mar 31 2020 00:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47072 * 299.99584 * 3 2 1 6 6 H 1.48501 * 109.47474 * 59.99284 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99925 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99971 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99897 * 359.72827 * 11 10 9 13 13 C 1.50695 * 119.99635 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.46798 * 180.02562 * 13 11 10 15 15 C 1.46902 * 110.99713 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47108 * 35.00571 * 15 14 13 17 17 C 1.52993 * 109.47222 * 274.99880 * 15 14 13 18 18 O 1.42902 * 109.47257 * 295.00055 * 17 15 14 19 19 C 1.50711 * 109.46649 * 154.99859 * 15 14 13 20 20 C 1.38228 * 119.99818 * 39.73172 * 19 15 14 21 21 C 1.38233 * 119.99767 * 179.78689 * 20 19 15 22 22 C 1.38243 * 120.00071 * 0.43613 * 21 20 19 23 23 C 1.38239 * 119.99616 * 359.81638 * 22 21 20 24 24 C 1.38232 * 119.99900 * 359.97249 * 23 22 21 25 25 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 27 27 H 1.09005 * 109.47240 * 300.00276 * 9 7 2 28 28 H 0.96999 * 119.99984 * 0.02562 * 10 9 7 29 29 H 1.09005 * 109.47403 * 300.00056 * 13 11 10 30 30 H 1.09002 * 109.47422 * 60.00295 * 13 11 10 31 31 H 1.00901 * 110.99951 * 303.95126 * 14 13 11 32 32 H 1.08995 * 109.47266 * 55.00441 * 17 15 14 33 33 H 1.09003 * 109.47118 * 175.00568 * 17 15 14 34 34 H 0.96705 * 114.00050 * 180.02562 * 18 17 15 35 35 H 1.08005 * 120.00470 * 359.97438 * 20 19 15 36 36 H 1.08004 * 120.00175 * 180.26799 * 21 20 19 37 37 H 1.08002 * 120.00167 * 179.83443 * 22 21 20 38 38 H 1.07994 * 119.99632 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.99845 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5616 -5.1050 0.0052 13 6 2.7333 -6.0287 0.0022 14 7 1.9988 -7.3009 0.0010 15 6 2.9234 -8.4425 0.0011 16 1 3.8058 -8.1954 0.5913 17 6 3.3430 -8.7590 -1.4358 18 8 2.2035 -9.1954 -2.1796 19 6 2.2384 -9.6436 0.6006 20 6 0.9109 -9.8982 0.3111 21 6 0.2838 -11.0023 0.8575 22 6 0.9818 -11.8469 1.7005 23 6 2.3079 -11.5894 1.9940 24 6 2.9361 -10.4876 1.4442 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4353 0.0028 29 1 3.3606 -5.9709 -0.8874 30 1 3.3593 -5.9710 0.8926 31 1 1.3616 -7.3513 0.7818 32 1 3.7580 -7.8637 -1.8987 33 1 4.0961 -9.5470 -1.4292 34 1 2.3960 -9.4143 -3.1017 35 1 0.3645 -9.2361 -0.3443 36 1 -0.7521 -11.2036 0.6280 37 1 0.4911 -12.7081 2.1295 38 1 2.8529 -12.2489 2.6529 39 1 3.9720 -10.2862 1.6738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063002977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:36 Heat of formation + Delta-G solvation = -60.242806 kcal Electronic energy + Delta-G solvation = -20777.950982 eV Core-core repulsion = 17492.294405 eV Total energy + Delta-G solvation = -3285.656577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.76534 -38.71659 -37.13125 -35.17771 -34.09918 -32.32764 -31.62529 -30.89948 -28.55634 -27.48677 -25.55823 -23.19759 -22.65393 -22.07640 -20.37096 -19.67219 -17.75033 -17.37428 -16.69142 -16.01881 -15.62133 -15.39657 -15.06988 -14.85809 -14.65407 -14.38665 -14.01105 -13.53768 -13.46521 -13.25758 -12.82217 -12.68741 -12.50360 -12.16964 -11.95371 -11.64414 -11.45609 -11.04471 -10.95099 -10.89346 -10.85129 -10.31629 -9.99465 -9.37193 -9.04124 -8.93890 -8.78056 -8.73139 -8.36253 -7.84714 -6.16064 -4.22963 1.26197 1.39671 3.23438 3.30352 3.33353 3.41158 3.66927 3.84700 4.20542 4.30416 4.47308 4.59487 4.84537 4.93576 5.08339 5.11838 5.19939 5.27892 5.33992 5.37774 5.45518 5.48345 5.56168 5.61603 5.65318 5.90767 6.05910 6.37250 6.50925 6.55495 6.94047 6.99374 7.33003 7.39592 7.47019 7.53947 7.66852 7.68672 7.98207 8.65262 8.80081 9.14119 9.43877 10.94206 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.002917 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.224057 B = 9597.286214 C = 9784.508061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.497 3.503 12 O -0.541 6.541 13 C 0.038 3.962 14 N -0.655 5.655 15 C 0.128 3.872 16 H 0.063 0.937 17 C 0.093 3.907 18 O -0.551 6.551 19 C -0.088 4.088 20 C -0.072 4.072 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.117 4.117 25 H 0.265 0.735 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.355 0.645 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.371 0.629 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -22.124 0.599 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.419 6.419 13 C -0.095 4.095 14 N -0.289 5.289 15 C 0.018 3.982 16 H 0.081 0.919 17 C 0.015 3.985 18 O -0.354 6.354 19 C -0.088 4.088 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.221 0.779 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.175 0.825 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.216 0.784 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.720 -22.016 0.508 23.336 hybrid contribution 1.605 0.992 0.376 1.924 sum 9.325 -21.024 0.884 23.016 Atomic orbital electron populations 1.69986 1.06104 1.27178 1.48980 1.24961 0.94915 0.99463 0.94746 0.86365 0.79799 0.83000 0.77752 1.19662 1.20787 1.20813 1.21265 0.93268 0.90478 1.53065 0.91888 1.19089 0.88300 0.81922 0.97713 1.46441 1.11030 1.06106 1.72871 1.20295 0.89519 0.84167 0.77912 1.90670 1.16642 1.84653 1.49901 1.21932 0.95822 0.89685 1.02028 1.60159 1.18032 0.98985 1.51697 1.20552 0.94233 0.88943 0.94502 0.91895 1.22094 0.87646 0.97322 0.91482 1.86619 1.34064 1.88689 1.26051 1.19735 0.94846 0.96607 0.97623 1.21184 0.94128 0.96410 0.97269 1.21239 1.00049 0.95379 0.97880 1.21151 0.94712 0.99531 0.98569 1.21018 0.95200 0.97800 1.00732 1.21001 0.99601 0.95377 0.97611 0.92499 0.95531 0.95625 0.77851 0.88735 0.92853 0.82454 0.93426 0.93940 0.78360 0.84407 0.86161 0.86478 0.86409 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 10 N -0.72 -15.04 5.55 -61.47 -0.34 -15.39 16 11 C 0.50 9.96 7.87 -10.98 -0.09 9.88 16 12 O -0.54 -13.26 16.20 5.56 0.09 -13.17 16 13 C 0.04 0.54 5.96 -4.98 -0.03 0.51 16 14 N -0.66 -9.32 5.26 -109.21 -0.57 -9.89 16 15 C 0.13 1.43 2.65 -68.86 -0.18 1.24 16 16 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 17 C 0.09 0.94 6.79 37.15 0.25 1.19 16 18 O -0.55 -6.23 12.07 -35.23 -0.43 -6.66 16 19 C -0.09 -1.01 4.59 -104.62 -0.48 -1.49 16 20 C -0.07 -0.90 8.00 -39.59 -0.32 -1.22 16 21 C -0.13 -1.41 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.18 9.67 -39.59 -0.38 -1.57 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 29 H 0.09 1.17 7.36 -51.93 -0.38 0.79 16 30 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 31 H 0.35 5.48 7.68 -39.29 -0.30 5.18 16 32 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.37 2.63 9.12 45.56 0.42 3.04 16 35 H 0.14 1.97 7.48 -52.48 -0.39 1.57 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.94 8.04 -52.48 -0.42 0.52 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -34.10 334.63 -8.05 -42.15 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.69 Total: 10.83 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.86 Total: -3.25 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.18 Total: -50.80 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.33 Total: -19.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.10 -8.05 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063002977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.092 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds