Wall clock time and date at job start Tue Mar 31 2020 00:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47072 * 299.99584 * 3 2 1 6 6 H 1.48501 * 109.47474 * 59.99284 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99925 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99971 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99897 * 359.72827 * 11 10 9 13 13 C 1.50695 * 119.99635 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.46798 * 180.02562 * 13 11 10 15 15 C 1.46902 * 110.99713 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47108 * 35.00571 * 15 14 13 17 17 C 1.52993 * 109.47222 * 274.99880 * 15 14 13 18 18 O 1.42902 * 109.47257 * 295.00055 * 17 15 14 19 19 C 1.50711 * 109.46649 * 154.99859 * 15 14 13 20 20 C 1.38228 * 119.99818 * 39.73172 * 19 15 14 21 21 C 1.38233 * 119.99767 * 179.78689 * 20 19 15 22 22 C 1.38243 * 120.00071 * 0.43613 * 21 20 19 23 23 C 1.38239 * 119.99616 * 359.81638 * 22 21 20 24 24 C 1.38232 * 119.99900 * 359.97249 * 23 22 21 25 25 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 27 27 H 1.09005 * 109.47240 * 300.00276 * 9 7 2 28 28 H 0.96999 * 119.99984 * 0.02562 * 10 9 7 29 29 H 1.09005 * 109.47403 * 300.00056 * 13 11 10 30 30 H 1.09002 * 109.47422 * 60.00295 * 13 11 10 31 31 H 1.00901 * 110.99951 * 303.95126 * 14 13 11 32 32 H 1.08995 * 109.47266 * 55.00441 * 17 15 14 33 33 H 1.09003 * 109.47118 * 175.00568 * 17 15 14 34 34 H 0.96705 * 114.00050 * 180.02562 * 18 17 15 35 35 H 1.08005 * 120.00470 * 359.97438 * 20 19 15 36 36 H 1.08004 * 120.00175 * 180.26799 * 21 20 19 37 37 H 1.08002 * 120.00167 * 179.83443 * 22 21 20 38 38 H 1.07994 * 119.99632 * 179.97438 * 23 22 21 39 39 H 1.08003 * 119.99845 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5616 -5.1050 0.0052 13 6 2.7333 -6.0287 0.0022 14 7 1.9988 -7.3009 0.0010 15 6 2.9234 -8.4425 0.0011 16 1 3.8058 -8.1954 0.5913 17 6 3.3430 -8.7590 -1.4358 18 8 2.2035 -9.1954 -2.1796 19 6 2.2384 -9.6436 0.6006 20 6 0.9109 -9.8982 0.3111 21 6 0.2838 -11.0023 0.8575 22 6 0.9818 -11.8469 1.7005 23 6 2.3079 -11.5894 1.9940 24 6 2.9361 -10.4876 1.4442 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4353 0.0028 29 1 3.3606 -5.9709 -0.8874 30 1 3.3593 -5.9710 0.8926 31 1 1.3616 -7.3513 0.7818 32 1 3.7580 -7.8637 -1.8987 33 1 4.0961 -9.5470 -1.4292 34 1 2.3960 -9.4143 -3.1017 35 1 0.3645 -9.2361 -0.3443 36 1 -0.7521 -11.2036 0.6280 37 1 0.4911 -12.7081 2.1295 38 1 2.8529 -12.2489 2.6529 39 1 3.9720 -10.2862 1.6738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063002977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:35 Heat of formation + Delta-G solvation = -87.973570 kcal Electronic energy + Delta-G solvation = -20779.153478 eV Core-core repulsion = 17492.294405 eV Total energy + Delta-G solvation = -3286.859073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77648 -40.16643 -38.00381 -36.31632 -35.90886 -34.34187 -32.59806 -31.69297 -29.90949 -28.89721 -26.92371 -24.55594 -23.79489 -23.21107 -21.37334 -21.19963 -19.14991 -18.31718 -18.03422 -17.26039 -17.12490 -16.86948 -16.29030 -16.10911 -15.80099 -15.49276 -15.30310 -14.74376 -14.51119 -14.29919 -14.09079 -13.97091 -13.81603 -13.60512 -13.39934 -12.89280 -12.86101 -12.71596 -12.48592 -12.21913 -11.83343 -11.64090 -11.45752 -10.81816 -10.75607 -10.72955 -9.82399 -9.73756 -9.58949 -9.36091 -8.29269 -6.46074 0.47667 0.59500 1.43130 1.44476 1.57930 1.80044 2.28841 2.49061 2.94578 3.05664 3.24273 3.47229 3.81780 3.97117 4.10427 4.22846 4.29824 4.36936 4.40207 4.43997 4.59178 4.65138 4.68503 4.77291 4.82508 5.11421 5.15367 5.24142 5.25917 5.49266 5.60147 5.65995 5.70255 5.73273 5.85066 6.05728 6.19545 6.26836 6.65770 6.95166 7.07119 7.23735 7.53505 8.83310 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.002917 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.224057 B = 9597.286214 C = 9784.508061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.708 5.708 11 C 0.492 3.508 12 O -0.593 6.593 13 C 0.055 3.945 14 N -0.675 5.675 15 C 0.126 3.874 16 H 0.089 0.911 17 C 0.091 3.909 18 O -0.577 6.577 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.142 4.142 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.120 4.120 25 H 0.268 0.732 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.409 0.591 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.343 0.657 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.386 0.614 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.701 -22.847 1.194 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.474 6.474 13 C -0.077 4.077 14 N -0.308 5.308 15 C 0.018 3.982 16 H 0.107 0.893 17 C 0.012 3.988 18 O -0.383 6.383 19 C -0.098 4.098 20 C -0.112 4.112 21 C -0.160 4.160 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.138 4.138 25 H 0.077 0.923 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.245 0.755 29 H 0.140 0.860 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.336 -22.778 1.085 25.466 hybrid contribution 0.442 1.104 0.190 1.205 sum 11.778 -21.673 1.275 24.700 Atomic orbital electron populations 1.70152 1.08359 1.28499 1.50102 1.26104 0.95781 1.04037 0.93897 0.85090 0.79136 0.77209 0.77635 1.17449 1.20514 1.20501 1.21657 0.94353 0.90497 1.52665 0.89640 1.18510 0.88740 0.84488 0.93864 1.46162 1.11156 1.05451 1.73157 1.21436 0.89955 0.84967 0.75729 1.90648 1.19511 1.85394 1.51816 1.21854 0.94062 0.86933 1.04802 1.60159 1.19120 0.99923 1.51587 1.20722 0.94227 0.87503 0.95785 0.89348 1.22211 0.87591 0.98326 0.90642 1.86596 1.35350 1.88884 1.27488 1.19842 0.94488 0.97236 0.98211 1.21056 0.95044 0.96958 0.98154 1.21408 1.00646 0.95486 0.98479 1.21451 0.95168 0.99806 0.97948 1.21410 0.95125 0.97852 1.00440 1.21301 1.00724 0.95023 0.96749 0.92277 0.99803 0.99679 0.75524 0.86043 0.89419 0.83787 0.92903 0.91634 0.76617 0.87321 0.85668 0.84279 0.83707 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.99 42.41 29.54 68.60 2.03 44.43 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.27 9.28 25.60 0.24 -30.03 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.89 5.43 85.63 0.46 15.36 16 10 N -0.71 -29.94 5.55 -466.78 -2.59 -32.53 16 11 C 0.49 19.91 7.87 87.65 0.69 20.60 16 12 O -0.59 -30.50 16.20 -3.01 -0.05 -30.54 16 13 C 0.06 1.46 5.96 85.55 0.51 1.97 16 14 N -0.67 -18.79 5.26 -499.44 -2.63 -21.41 16 15 C 0.13 2.57 2.65 44.17 0.12 2.69 16 16 H 0.09 1.34 7.66 -2.39 -0.02 1.32 16 17 C 0.09 1.63 6.79 71.98 0.49 2.11 16 18 O -0.58 -12.78 12.07 -148.98 -1.80 -14.58 16 19 C -0.10 -2.14 4.59 -19.86 -0.09 -2.23 16 20 C -0.09 -2.41 8.00 22.27 0.18 -2.24 16 21 C -0.14 -3.16 10.05 22.27 0.22 -2.94 16 22 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.12 -2.09 9.67 22.27 0.22 -1.88 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 27 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 28 H 0.41 13.89 8.32 -92.71 -0.77 13.12 16 29 H 0.12 2.60 7.36 -2.38 -0.02 2.58 16 30 H 0.09 1.77 8.06 -2.39 -0.02 1.75 16 31 H 0.34 10.84 7.68 -89.69 -0.69 10.15 16 32 H 0.05 0.88 7.35 -2.39 -0.02 0.86 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.39 5.25 9.12 -74.05 -0.68 4.58 16 35 H 0.11 3.37 7.48 -2.91 -0.02 3.35 16 36 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.14 1.71 8.04 -2.91 -0.02 1.69 16 Total: -1.00 -78.18 334.63 -1.86 -80.04 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -1.05 Total: 31.27 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 3.94 Total: -0.02 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.93 Total: -110.60 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.85 Total: -45.12 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -78.18 -1.86 -80.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063002977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.931 kcal (2) G-P(sol) polarization free energy of solvation -78.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds