Wall clock time and date at job start Tue Mar 31 2020 00:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47367 * 239.99978 * 3 2 1 5 5 H 1.48500 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47218 * 119.99999 * 3 2 1 7 7 C 1.37872 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00217 * 0.27043 * 7 2 1 10 10 C 1.53001 * 109.47082 * 179.72267 * 9 7 2 11 11 N 1.46900 * 109.47284 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00217 * 294.30924 * 11 10 9 13 13 C 1.53236 * 109.34259 * 172.74206 * 12 11 10 14 14 N 1.47081 * 108.51712 * 53.82634 * 13 12 11 15 15 C 1.34779 * 120.87815 * 128.79653 * 14 13 12 16 16 O 1.21693 * 120.00061 * 176.42908 * 15 14 13 17 17 C 1.46657 * 120.00000 * 356.42164 * 15 14 13 18 18 C 1.36545 * 125.98871 * 186.96539 * 17 15 14 19 19 C 1.40362 * 106.70959 * 179.91566 * 18 17 15 20 20 C 1.35126 * 107.11399 * 0.34816 * 19 18 17 21 21 O 1.33934 * 108.76819 * 359.78794 * 20 19 18 22 22 C 1.47079 * 118.24203 * 308.81434 * 14 13 12 23 23 C 1.46896 * 111.00158 * 170.00309 * 11 10 9 24 24 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47145 * 299.72678 * 9 7 2 26 26 H 1.08994 * 109.46773 * 59.73113 * 9 7 2 27 27 H 1.09000 * 109.47711 * 300.00599 * 10 9 7 28 28 H 1.09008 * 109.46696 * 60.00671 * 10 9 7 29 29 H 1.08998 * 109.49199 * 292.70522 * 12 11 10 30 30 H 1.08999 * 109.49541 * 52.78120 * 12 11 10 31 31 H 1.09000 * 109.62707 * 294.12368 * 13 12 11 32 32 H 1.08990 * 109.62770 * 173.53663 * 13 12 11 33 33 H 1.08007 * 126.64477 * 0.03998 * 18 17 15 34 34 H 1.08003 * 126.44490 * 180.15800 * 19 18 17 35 35 H 1.08001 * 125.61977 * 179.78080 * 20 19 18 36 36 H 1.08995 * 109.62773 * 291.47592 * 22 14 13 37 37 H 1.08999 * 109.62883 * 170.89410 * 22 14 13 38 38 H 1.09000 * 109.49196 * 307.21266 * 23 11 10 39 39 H 1.09001 * 109.49460 * 67.29645 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0073 10 6 2.2452 -3.6621 -0.0135 11 7 1.5107 -4.9343 -0.0207 12 6 0.7582 -5.1148 1.2280 13 6 -0.1320 -6.3564 1.1091 14 7 0.7088 -7.4984 0.7188 15 6 0.6685 -8.6550 1.4096 16 8 1.3218 -9.6108 1.0346 17 6 -0.1626 -8.7617 2.6132 18 6 -0.1932 -9.8196 3.4760 19 6 -1.1204 -9.4958 4.4788 20 6 -1.6148 -8.2734 4.1836 21 8 -1.0353 -7.8343 3.0588 22 6 1.5949 -7.3446 -0.4449 23 6 2.4172 -6.0641 -0.2647 24 1 -0.4849 0.8401 -0.0004 25 1 0.6244 -2.5615 0.8824 26 1 0.6244 -2.5522 -0.8975 27 1 2.8719 -3.5997 -0.9031 28 1 2.8719 -3.6090 0.8769 29 1 1.4544 -5.2444 2.0567 30 1 0.1368 -4.2377 1.4084 31 1 -0.8959 -6.1879 0.3500 32 1 -0.6049 -6.5612 2.0695 33 1 0.3857 -10.7284 3.4023 34 1 -1.3905 -10.1098 5.3253 35 1 -2.3553 -7.7385 4.7598 36 1 0.9970 -7.2711 -1.3532 37 1 2.2636 -8.2028 -0.5118 38 1 2.9988 -5.8754 -1.1671 39 1 3.0903 -6.1805 0.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066862376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:43 Heat of formation + Delta-G solvation = 0.909881 kcal Electronic energy + Delta-G solvation = -21574.724552 eV Core-core repulsion = 18291.719755 eV Total energy + Delta-G solvation = -3283.004797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.94465 -39.93789 -37.92514 -35.00265 -33.35099 -32.91379 -31.44920 -30.12599 -29.69241 -26.94594 -24.34395 -23.72185 -23.02946 -21.97494 -20.99189 -20.30753 -19.60937 -17.74274 -16.92213 -16.57367 -16.36769 -15.94469 -15.04132 -14.88942 -14.61370 -14.40174 -14.21117 -14.02217 -13.37980 -13.31114 -13.28514 -12.90417 -12.53229 -12.20408 -11.86315 -11.41227 -11.27399 -11.06100 -10.95839 -10.79249 -10.58987 -10.30224 -10.22688 -9.90419 -9.46849 -9.17729 -9.01478 -8.66364 -8.36319 -7.82888 -6.03108 -4.05664 0.88915 2.15034 2.41866 2.94693 3.07024 3.31322 3.35941 3.38206 4.28305 4.30065 4.48564 4.66946 4.73439 5.03386 5.11011 5.27229 5.32452 5.35543 5.37382 5.50396 5.52068 5.55886 5.73232 5.87748 6.00292 6.08828 6.10913 6.13188 6.28820 6.36742 6.49410 6.66023 6.89322 7.21319 7.40788 7.45393 7.72522 7.83354 7.91870 8.02700 8.38962 9.01006 9.58211 11.08144 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.003643 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.331563 B = 7683.100844 C = 8455.797025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.041 3.959 13 C 0.096 3.904 14 N -0.599 5.599 15 C 0.599 3.401 16 O -0.531 6.531 17 C -0.074 4.074 18 C -0.123 4.123 19 C -0.226 4.226 20 C -0.014 4.014 21 O -0.154 6.154 22 C 0.118 3.882 23 C 0.040 3.960 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.209 0.791 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 -17.391 6.929 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.263 5.263 12 C -0.087 4.087 13 C -0.026 4.026 14 N -0.331 5.331 15 C 0.387 3.613 16 O -0.410 6.410 17 C -0.125 4.125 18 C -0.143 4.143 19 C -0.245 4.245 20 C -0.083 4.083 21 O -0.050 6.050 22 C -0.004 4.004 23 C -0.089 4.089 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.226 0.774 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.988 -17.459 6.156 18.752 hybrid contribution 0.950 0.912 0.918 1.605 sum -2.038 -16.547 7.074 18.111 Atomic orbital electron populations 1.69957 1.06003 1.26738 1.50491 1.24980 0.94842 0.99168 0.95231 0.86654 0.79581 0.83116 0.78609 1.20215 1.21254 1.20309 1.21145 0.92962 0.91050 1.51125 0.92853 1.19098 0.93940 0.90059 0.97777 1.22358 0.96795 0.88021 0.99151 1.62069 1.27492 1.02620 1.34104 1.22495 0.97297 0.98076 0.90874 1.22527 0.93250 0.84499 1.02334 1.48150 1.42001 1.12873 1.30033 1.16721 0.80659 0.83047 0.80832 1.90848 1.44803 1.37312 1.68082 1.22116 0.99307 0.91118 0.99983 1.21949 0.99596 0.99060 0.93733 1.21837 1.01862 0.98106 1.02697 1.24619 0.99478 0.96214 0.88027 1.84266 1.44647 1.40801 1.35320 1.21831 0.93011 0.98128 0.87426 1.22468 0.94282 0.90872 1.01317 0.92913 0.96508 0.95609 0.91825 0.96136 0.95081 0.87972 0.89988 0.87350 0.82371 0.82715 0.77423 0.90239 0.88873 0.89464 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 10 C 0.06 1.29 4.90 -3.82 -0.02 1.27 16 11 N -0.54 -9.41 4.63 -234.32 -1.08 -10.50 16 12 C 0.04 0.67 5.46 -3.70 -0.02 0.65 16 13 C 0.10 1.32 6.46 -3.60 -0.02 1.30 16 14 N -0.60 -8.56 3.01 -174.02 -0.52 -9.08 16 15 C 0.60 8.90 7.67 -12.86 -0.10 8.81 16 16 O -0.53 -9.02 16.34 5.20 0.08 -8.93 16 17 C -0.07 -0.95 6.85 -36.80 -0.25 -1.20 16 18 C -0.12 -1.36 10.63 -39.39 -0.42 -1.78 16 19 C -0.23 -1.94 10.87 -39.89 -0.43 -2.37 16 20 C -0.01 -0.12 12.08 29.63 0.36 0.24 16 21 O -0.15 -1.74 7.10 5.00 0.04 -1.70 16 22 C 0.12 1.60 6.59 -3.60 -0.02 1.58 16 23 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.44 6.40 -51.93 -0.33 0.11 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.28 7.97 -51.93 -0.41 0.87 16 28 H 0.02 0.42 8.13 -51.92 -0.42 0.00 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 1.80 6.16 -51.93 -0.32 1.48 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.11 1.37 3.88 -54.87 -0.21 1.16 16 33 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.23 7.08 -51.93 -0.37 0.86 16 38 H 0.09 1.17 7.99 -51.93 -0.41 0.76 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -31.98 320.36 -7.85 -39.83 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.41 Total: -1.55 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.50 Total: -3.65 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.87 Total: -45.16 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.12 Total: -10.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.98 -7.85 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066862376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.741 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds