Wall clock time and date at job start Tue Mar 31 2020 00:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47367 * 239.99978 * 3 2 1 5 5 H 1.48500 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47218 * 119.99999 * 3 2 1 7 7 C 1.37872 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00217 * 0.27043 * 7 2 1 10 10 C 1.53001 * 109.47082 * 179.72267 * 9 7 2 11 11 N 1.46900 * 109.47284 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00217 * 294.30924 * 11 10 9 13 13 C 1.53236 * 109.34259 * 172.74206 * 12 11 10 14 14 N 1.47081 * 108.51712 * 53.82634 * 13 12 11 15 15 C 1.34779 * 120.87815 * 128.79653 * 14 13 12 16 16 O 1.21693 * 120.00061 * 176.42908 * 15 14 13 17 17 C 1.46657 * 120.00000 * 356.42164 * 15 14 13 18 18 C 1.36545 * 125.98871 * 186.96539 * 17 15 14 19 19 C 1.40362 * 106.70959 * 179.91566 * 18 17 15 20 20 C 1.35126 * 107.11399 * 0.34816 * 19 18 17 21 21 O 1.33934 * 108.76819 * 359.78794 * 20 19 18 22 22 C 1.47079 * 118.24203 * 308.81434 * 14 13 12 23 23 C 1.46896 * 111.00158 * 170.00309 * 11 10 9 24 24 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47145 * 299.72678 * 9 7 2 26 26 H 1.08994 * 109.46773 * 59.73113 * 9 7 2 27 27 H 1.09000 * 109.47711 * 300.00599 * 10 9 7 28 28 H 1.09008 * 109.46696 * 60.00671 * 10 9 7 29 29 H 1.08998 * 109.49199 * 292.70522 * 12 11 10 30 30 H 1.08999 * 109.49541 * 52.78120 * 12 11 10 31 31 H 1.09000 * 109.62707 * 294.12368 * 13 12 11 32 32 H 1.08990 * 109.62770 * 173.53663 * 13 12 11 33 33 H 1.08007 * 126.64477 * 0.03998 * 18 17 15 34 34 H 1.08003 * 126.44490 * 180.15800 * 19 18 17 35 35 H 1.08001 * 125.61977 * 179.78080 * 20 19 18 36 36 H 1.08995 * 109.62773 * 291.47592 * 22 14 13 37 37 H 1.08999 * 109.62883 * 170.89410 * 22 14 13 38 38 H 1.09000 * 109.49196 * 307.21266 * 23 11 10 39 39 H 1.09001 * 109.49460 * 67.29645 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0073 10 6 2.2452 -3.6621 -0.0135 11 7 1.5107 -4.9343 -0.0207 12 6 0.7582 -5.1148 1.2280 13 6 -0.1320 -6.3564 1.1091 14 7 0.7088 -7.4984 0.7188 15 6 0.6685 -8.6550 1.4096 16 8 1.3218 -9.6108 1.0346 17 6 -0.1626 -8.7617 2.6132 18 6 -0.1932 -9.8196 3.4760 19 6 -1.1204 -9.4958 4.4788 20 6 -1.6148 -8.2734 4.1836 21 8 -1.0353 -7.8343 3.0588 22 6 1.5949 -7.3446 -0.4449 23 6 2.4172 -6.0641 -0.2647 24 1 -0.4849 0.8401 -0.0004 25 1 0.6244 -2.5615 0.8824 26 1 0.6244 -2.5522 -0.8975 27 1 2.8719 -3.5997 -0.9031 28 1 2.8719 -3.6090 0.8769 29 1 1.4544 -5.2444 2.0567 30 1 0.1368 -4.2377 1.4084 31 1 -0.8959 -6.1879 0.3500 32 1 -0.6049 -6.5612 2.0695 33 1 0.3857 -10.7284 3.4023 34 1 -1.3905 -10.1098 5.3253 35 1 -2.3553 -7.7385 4.7598 36 1 0.9970 -7.2711 -1.3532 37 1 2.2636 -8.2028 -0.5118 38 1 2.9988 -5.8754 -1.1671 39 1 3.0903 -6.1805 0.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066862376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:42 Heat of formation + Delta-G solvation = -20.479815 kcal Electronic energy + Delta-G solvation = -21575.652079 eV Core-core repulsion = 18291.719755 eV Total energy + Delta-G solvation = -3283.932324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.74564 -41.09249 -39.23043 -36.41792 -34.93773 -34.07972 -32.67913 -31.66188 -30.80283 -28.41064 -25.99371 -24.98488 -24.24089 -22.74295 -22.28236 -21.76782 -20.71367 -18.83063 -18.51610 -17.78825 -17.45420 -17.00441 -16.55619 -16.23590 -16.13806 -15.81260 -15.54578 -15.16734 -14.79711 -14.37160 -14.17437 -14.10417 -13.82088 -13.60248 -13.26753 -13.14855 -12.80926 -12.62361 -12.37688 -12.33233 -12.11730 -11.79262 -11.41193 -11.31196 -11.24402 -11.05001 -10.51380 -10.06125 -9.62505 -9.24493 -8.18523 -6.29221 0.00018 1.41828 1.42495 1.44176 1.52007 1.52480 1.95866 2.05174 2.41505 2.98903 3.15107 3.36859 3.83939 3.91045 3.94881 4.07220 4.11161 4.20079 4.26851 4.39631 4.54690 4.60770 4.68365 4.69795 4.76856 4.81987 4.90813 4.96318 5.05354 5.10192 5.30567 5.44535 5.46681 5.66059 5.76152 5.86296 6.04199 6.16106 6.21763 6.31319 6.81912 6.87185 7.39583 8.93080 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.003643 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.331563 B = 7683.100844 C = 8455.797025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.546 5.546 12 C 0.045 3.955 13 C 0.106 3.894 14 N -0.603 5.603 15 C 0.598 3.402 16 O -0.562 6.562 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.230 4.230 20 C 0.002 3.998 21 O -0.167 6.167 22 C 0.121 3.879 23 C 0.044 3.956 24 H 0.264 0.736 25 H -0.001 1.001 26 H -0.004 1.004 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.251 0.749 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 -17.682 8.062 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.047 4.047 11 N -0.271 5.271 12 C -0.084 4.084 13 C -0.015 4.015 14 N -0.334 5.334 15 C 0.388 3.612 16 O -0.443 6.443 17 C -0.163 4.163 18 C -0.140 4.140 19 C -0.249 4.249 20 C -0.067 4.067 21 O -0.064 6.064 22 C -0.001 4.001 23 C -0.085 4.085 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.087 0.913 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.179 0.821 34 H 0.202 0.798 35 H 0.267 0.733 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.982 -17.762 7.288 19.429 hybrid contribution 0.868 0.940 0.654 1.437 sum -2.115 -16.822 7.941 18.722 Atomic orbital electron populations 1.70088 1.07655 1.27799 1.51295 1.25895 0.95732 1.03081 0.94663 0.85539 0.78306 0.78324 0.79090 1.19290 1.20818 1.19325 1.21592 0.93487 0.92372 1.51057 0.92359 1.18917 0.94151 0.91557 0.95381 1.21995 0.95483 0.88033 0.99222 1.61987 1.27900 1.02361 1.34860 1.22438 0.97155 0.98508 0.90285 1.22439 0.92524 0.83207 1.03370 1.48213 1.42082 1.12907 1.30178 1.16972 0.80473 0.82566 0.81215 1.90813 1.46279 1.38115 1.69127 1.21813 1.01314 0.92613 1.00580 1.22247 0.99442 0.98524 0.93790 1.22202 1.01083 0.98643 1.02957 1.25534 0.98530 0.96194 0.86420 1.84164 1.44754 1.40901 1.36585 1.21827 0.93098 0.97549 0.87636 1.22512 0.93999 0.90093 1.01854 0.92752 0.98309 0.98589 0.91335 0.96368 0.95345 0.89935 0.89919 0.85841 0.82104 0.79753 0.73316 0.89555 0.88316 0.87990 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.04 1.94 4.90 29.85 0.15 2.08 16 10 C 0.08 3.30 4.90 86.30 0.42 3.72 16 11 N -0.55 -19.18 4.63 -895.25 -4.14 -23.33 16 12 C 0.04 1.48 5.46 86.38 0.47 1.95 16 13 C 0.11 2.91 6.46 86.35 0.56 3.47 16 14 N -0.60 -17.08 3.01 -822.69 -2.48 -19.56 16 15 C 0.60 17.72 7.67 86.44 0.66 18.38 16 16 O -0.56 -19.20 16.34 -4.33 -0.07 -19.27 16 17 C -0.11 -2.80 6.85 24.07 0.16 -2.64 16 18 C -0.12 -2.47 10.63 22.39 0.24 -2.24 16 19 C -0.23 -3.26 10.87 22.07 0.24 -3.02 16 20 C 0.00 0.02 12.08 67.10 0.81 0.83 16 21 O -0.17 -3.50 7.10 -5.03 -0.04 -3.54 16 22 C 0.12 3.22 6.59 86.35 0.57 3.79 16 23 C 0.04 1.26 5.62 86.38 0.49 1.74 16 24 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.00 -0.07 6.40 -2.39 -0.02 -0.09 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 2.74 7.97 -2.39 -0.02 2.72 16 28 H 0.02 0.75 8.13 -2.38 -0.02 0.73 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 3.03 6.16 -2.39 -0.01 3.02 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.12 3.06 3.88 -48.93 -0.19 2.87 16 33 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.25 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.55 7.08 -2.39 -0.02 2.54 16 38 H 0.10 2.62 7.99 -2.39 -0.02 2.60 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -69.72 320.36 1.91 -67.80 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.87 Total: 9.14 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.46 Total: -1.65 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -6.34 Total: -98.13 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.11 Total: -22.81 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -69.72 1.91 -67.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066862376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.321 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds