Wall clock time and date at job start Mon Mar 30 2020 23:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35890 * 117.00407 * 2 1 4 4 C 1.38671 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.38676 * 120.00427 * 180.02562 * 4 3 2 6 6 O 1.35892 * 120.00172 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99912 * 0.02752 * 6 5 4 8 8 C 1.38680 * 119.99606 * 0.02562 * 5 4 3 9 9 C 1.38677 * 120.00078 * 359.95234 * 8 5 4 10 10 O 1.35889 * 119.99832 * 180.02562 * 9 8 5 11 11 C 1.42905 * 117.00016 * 174.94190 * 10 9 8 12 12 C 1.52997 * 109.46886 * 183.48785 * 11 10 9 13 13 C 1.50702 * 115.55025 * 39.37389 * 12 11 10 14 14 H 1.07998 * 120.00125 * 266.21346 * 13 12 11 15 15 C 1.37873 * 120.00130 * 86.22183 * 13 12 11 16 16 N 1.31520 * 119.99972 * 184.78442 * 15 13 12 17 17 Si 1.86799 * 120.00058 * 4.77975 * 15 13 12 18 18 H 1.48498 * 109.47487 * 84.89431 * 17 15 13 19 19 H 1.48505 * 109.47400 * 204.89030 * 17 15 13 20 20 H 1.48498 * 109.47141 * 324.89154 * 17 15 13 21 21 C 1.53001 * 117.49584 * 185.03840 * 12 11 10 22 22 C 1.52999 * 60.03187 * 107.48089 * 21 12 11 23 23 C 1.38672 * 120.00104 * 0.27329 * 9 8 5 24 24 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47004 * 300.00499 * 1 2 3 26 26 H 1.09001 * 109.46873 * 60.00129 * 1 2 3 27 27 H 1.08005 * 119.99803 * 0.02562 * 4 3 2 28 28 H 1.09008 * 109.46959 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47130 * 299.99650 * 7 6 5 30 30 H 1.08999 * 109.47465 * 60.00162 * 7 6 5 31 31 H 1.08002 * 119.99647 * 179.97438 * 8 5 4 32 32 H 1.08997 * 109.46854 * 63.48838 * 11 10 9 33 33 H 1.08995 * 109.46840 * 303.48783 * 11 10 9 34 34 H 0.97003 * 120.00167 * 179.97438 * 16 15 13 35 35 H 1.09000 * 117.49985 * 214.98116 * 21 12 11 36 36 H 1.08996 * 117.49795 * 359.97438 * 21 12 11 37 37 H 1.08998 * 117.49444 * 107.50107 * 22 21 12 38 38 H 1.08996 * 117.49852 * 252.52279 * 22 21 12 39 39 H 1.08001 * 120.00380 * 179.72805 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2908 2.3738 -0.0005 5 6 1.9204 3.6094 -0.0011 6 8 1.1803 4.7491 -0.0021 7 6 -0.2408 4.5998 -0.0020 8 6 3.3053 3.6819 -0.0016 9 6 4.0605 2.5188 -0.0006 10 8 5.4175 2.5898 -0.0006 11 6 6.1318 1.3573 0.1127 12 6 7.6333 1.6425 0.1824 13 6 8.0292 2.8448 1.0001 14 1 8.1635 3.8034 0.5210 15 6 8.2203 2.7211 2.3599 16 7 8.4733 3.7868 3.0881 17 14 8.1196 1.0401 3.1682 18 1 9.4359 0.3606 3.0630 19 1 7.7581 1.1998 4.5997 20 1 7.0849 0.2233 2.4845 21 6 8.5810 0.4413 0.1877 22 6 8.4716 1.3230 -1.0579 23 6 3.4309 1.2832 -0.0048 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2122 2.3174 -0.0005 28 1 -0.7095 5.5840 -0.0025 29 1 -0.5484 4.0501 -0.8915 30 1 -0.5485 4.0517 0.8884 31 1 3.7957 4.6442 -0.0024 32 1 5.9203 0.7337 -0.7559 33 1 5.8182 0.8376 1.0181 34 1 8.6073 3.6998 4.0449 35 1 9.4911 0.5209 0.7823 36 1 8.1347 -0.5520 0.1420 37 1 9.3097 1.9826 -1.2827 38 1 7.9530 0.9099 -1.9230 39 1 4.0190 0.3774 -0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:23 Heat of formation + Delta-G solvation = -52.415538 kcal Electronic energy + Delta-G solvation = -21631.740962 eV Core-core repulsion = 18314.131050 eV Total energy + Delta-G solvation = -3317.609912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52641 -38.82430 -38.74968 -36.72608 -35.09608 -32.04066 -30.31012 -29.41073 -28.03441 -27.03765 -26.42854 -25.22835 -22.28907 -21.74363 -21.45881 -19.10453 -18.95035 -17.07927 -16.60457 -16.03959 -15.90196 -15.87199 -15.59116 -15.53148 -15.26069 -14.72675 -14.51381 -14.11037 -13.44512 -12.76972 -12.60169 -12.52217 -12.46557 -12.31396 -11.73769 -11.65794 -11.43847 -11.31715 -11.14265 -10.92849 -10.56906 -10.47148 -10.13834 -9.81195 -9.58196 -9.10093 -8.54265 -8.48348 -7.96196 -7.82207 -6.05097 -4.06432 1.62301 1.65669 3.04666 3.24229 3.30023 3.39589 3.40502 3.92463 4.01046 4.44664 4.83060 4.88920 4.91885 4.97945 5.01952 5.02763 5.19555 5.22008 5.27319 5.33735 5.36016 5.48229 5.61466 5.78788 5.88906 5.92938 6.06885 6.24251 6.35830 6.39744 6.42122 6.49707 6.65079 6.74962 6.93145 7.06779 7.18183 7.53592 7.72508 8.05086 8.56253 9.00475 9.57089 11.07201 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.004993 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.683334 B = 5606.324186 C = 6073.754368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.197 3.803 4 C -0.343 4.343 5 C 0.197 3.803 6 O -0.311 6.311 7 C 0.029 3.971 8 C -0.222 4.222 9 C 0.220 3.780 10 O -0.266 6.266 11 C 0.093 3.907 12 C -0.003 4.003 13 C -0.474 4.474 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.895 5.895 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.264 1.264 21 C -0.196 4.196 22 C -0.176 4.176 23 C -0.283 4.283 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.142 0.858 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.423 -5.539 -6.565 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.151 3.849 4 C -0.363 4.363 5 C 0.151 3.849 6 O -0.224 6.224 7 C -0.066 4.066 8 C -0.241 4.241 9 C 0.171 3.829 10 O -0.176 6.176 11 C 0.018 3.982 12 C -0.004 4.004 13 C -0.511 4.511 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.532 5.532 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.189 1.189 21 C -0.233 4.233 22 C -0.213 4.213 23 C -0.302 4.302 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.092 -5.290 -6.382 18.996 hybrid contribution -0.620 -1.223 0.643 1.515 sum -17.712 -6.513 -5.739 19.725 Atomic orbital electron populations 1.23020 0.78722 1.03650 1.01249 1.86071 1.21160 1.27161 1.88407 1.18301 0.91274 0.83318 0.91968 1.20954 0.99910 0.91828 1.23588 1.18190 0.90230 0.84232 0.92242 1.86086 1.18811 1.29134 1.88371 1.23025 0.78798 1.03621 1.01160 1.19391 0.89765 0.98616 1.16354 1.18422 0.84308 0.91661 0.88542 1.86351 1.12366 1.33928 1.84956 1.22700 0.93203 0.83170 0.99092 1.19305 0.86419 0.96167 0.98499 1.20126 1.45964 0.93535 0.91458 0.90102 1.24955 0.94228 0.96287 0.96981 1.69892 1.48373 1.28564 1.06405 0.86932 0.78981 0.85300 0.78181 1.20248 1.22115 1.18878 1.23016 1.02988 0.94424 1.02844 1.22930 1.04005 1.03329 0.91083 1.20386 0.92235 0.98175 1.19450 0.88383 0.92745 0.92786 0.85235 0.88284 0.92837 0.92793 0.83999 0.93757 0.92327 0.92599 0.88825 0.90781 0.89140 0.90762 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.40 10.49 -19.40 -0.20 -4.60 16 3 C 0.20 3.12 6.68 -39.26 -0.26 2.85 16 4 C -0.34 -4.91 8.02 -39.26 -0.31 -5.22 16 5 C 0.20 3.14 6.68 -39.26 -0.26 2.88 16 6 O -0.31 -4.42 10.49 -19.40 -0.20 -4.62 16 7 C 0.03 0.26 9.81 101.05 0.99 1.25 16 8 C -0.22 -4.10 9.92 -39.26 -0.39 -4.49 16 9 C 0.22 4.33 6.67 -39.26 -0.26 4.07 16 10 O -0.27 -6.00 9.51 -19.39 -0.18 -6.19 16 11 C 0.09 2.00 4.69 37.16 0.17 2.17 16 12 C 0.00 -0.07 1.26 -155.62 -0.20 -0.26 16 13 C -0.47 -13.33 8.82 -34.44 -0.30 -13.64 16 14 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 16 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 17 Si 0.88 21.78 24.89 -169.99 -4.23 17.55 16 18 H -0.28 -6.63 7.03 56.52 0.40 -6.23 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.26 -6.18 5.69 56.52 0.32 -5.86 16 21 C -0.20 -4.06 7.52 -26.73 -0.20 -4.27 16 22 C -0.18 -3.55 9.89 -26.69 -0.26 -3.81 16 23 C -0.28 -5.05 8.97 -39.26 -0.35 -5.40 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.13 1.42 4.52 -52.48 -0.24 1.19 16 28 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.14 2.64 8.06 -52.49 -0.42 2.22 16 32 H 0.04 0.82 7.43 -51.93 -0.39 0.44 16 33 H 0.06 1.27 6.23 -51.93 -0.32 0.95 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 2.03 6.92 -51.93 -0.36 1.67 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 39 H 0.14 2.33 6.31 -52.49 -0.33 2.00 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -32.28 320.52 -5.37 -37.65 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.40 Total: 2.56 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.75 Total: -20.46 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.59 Total: -15.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.23 Total: 17.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.28 -5.37 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds