Wall clock time and date at job start Mon Mar 30 2020 23:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35890 * 117.00407 * 2 1 4 4 C 1.38671 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.38676 * 120.00427 * 180.02562 * 4 3 2 6 6 O 1.35892 * 120.00172 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99912 * 0.02752 * 6 5 4 8 8 C 1.38680 * 119.99606 * 0.02562 * 5 4 3 9 9 C 1.38677 * 120.00078 * 359.95234 * 8 5 4 10 10 O 1.35889 * 119.99832 * 180.02562 * 9 8 5 11 11 C 1.42905 * 117.00016 * 174.94190 * 10 9 8 12 12 C 1.52997 * 109.46886 * 183.48785 * 11 10 9 13 13 C 1.50702 * 115.55025 * 39.37389 * 12 11 10 14 14 H 1.07998 * 120.00125 * 266.21346 * 13 12 11 15 15 C 1.37873 * 120.00130 * 86.22183 * 13 12 11 16 16 N 1.31520 * 119.99972 * 184.78442 * 15 13 12 17 17 Si 1.86799 * 120.00058 * 4.77975 * 15 13 12 18 18 H 1.48498 * 109.47487 * 84.89431 * 17 15 13 19 19 H 1.48505 * 109.47400 * 204.89030 * 17 15 13 20 20 H 1.48498 * 109.47141 * 324.89154 * 17 15 13 21 21 C 1.53001 * 117.49584 * 185.03840 * 12 11 10 22 22 C 1.52999 * 60.03187 * 107.48089 * 21 12 11 23 23 C 1.38672 * 120.00104 * 0.27329 * 9 8 5 24 24 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47004 * 300.00499 * 1 2 3 26 26 H 1.09001 * 109.46873 * 60.00129 * 1 2 3 27 27 H 1.08005 * 119.99803 * 0.02562 * 4 3 2 28 28 H 1.09008 * 109.46959 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47130 * 299.99650 * 7 6 5 30 30 H 1.08999 * 109.47465 * 60.00162 * 7 6 5 31 31 H 1.08002 * 119.99647 * 179.97438 * 8 5 4 32 32 H 1.08997 * 109.46854 * 63.48838 * 11 10 9 33 33 H 1.08995 * 109.46840 * 303.48783 * 11 10 9 34 34 H 0.97003 * 120.00167 * 179.97438 * 16 15 13 35 35 H 1.09000 * 117.49985 * 214.98116 * 21 12 11 36 36 H 1.08996 * 117.49795 * 359.97438 * 21 12 11 37 37 H 1.08998 * 117.49444 * 107.50107 * 22 21 12 38 38 H 1.08996 * 117.49852 * 252.52279 * 22 21 12 39 39 H 1.08001 * 120.00380 * 179.72805 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2908 2.3738 -0.0005 5 6 1.9204 3.6094 -0.0011 6 8 1.1803 4.7491 -0.0021 7 6 -0.2408 4.5998 -0.0020 8 6 3.3053 3.6819 -0.0016 9 6 4.0605 2.5188 -0.0006 10 8 5.4175 2.5898 -0.0006 11 6 6.1318 1.3573 0.1127 12 6 7.6333 1.6425 0.1824 13 6 8.0292 2.8448 1.0001 14 1 8.1635 3.8034 0.5210 15 6 8.2203 2.7211 2.3599 16 7 8.4733 3.7868 3.0881 17 14 8.1196 1.0401 3.1682 18 1 9.4359 0.3606 3.0630 19 1 7.7581 1.1998 4.5997 20 1 7.0849 0.2233 2.4845 21 6 8.5810 0.4413 0.1877 22 6 8.4716 1.3230 -1.0579 23 6 3.4309 1.2832 -0.0048 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2122 2.3174 -0.0005 28 1 -0.7095 5.5840 -0.0025 29 1 -0.5484 4.0501 -0.8915 30 1 -0.5485 4.0517 0.8884 31 1 3.7957 4.6442 -0.0024 32 1 5.9203 0.7337 -0.7559 33 1 5.8182 0.8376 1.0181 34 1 8.6073 3.6998 4.0449 35 1 9.4911 0.5209 0.7823 36 1 8.1347 -0.5520 0.1420 37 1 9.3097 1.9826 -1.2827 38 1 7.9530 0.9099 -1.9230 39 1 4.0190 0.3774 -0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088272137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:22 Heat of formation + Delta-G solvation = -74.661332 kcal Electronic energy + Delta-G solvation = -21632.705612 eV Core-core repulsion = 18314.131050 eV Total energy + Delta-G solvation = -3318.574562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.73602 -40.21797 -39.83182 -38.34345 -36.41115 -34.22211 -31.47378 -30.67901 -29.01999 -28.34791 -27.66237 -27.05369 -23.54087 -23.34007 -22.73885 -20.95886 -20.13007 -18.60809 -17.95262 -17.37453 -17.20345 -17.08396 -17.04611 -16.80022 -16.41330 -16.19163 -15.66396 -15.65885 -14.84728 -14.76834 -14.17956 -13.78501 -13.62409 -13.34275 -13.12566 -12.99943 -12.82738 -12.47656 -12.30644 -12.26515 -12.15904 -12.08918 -11.95048 -11.47879 -11.07159 -10.93870 -10.60804 -10.28661 -9.23011 -9.13816 -8.26609 -6.32329 0.34853 0.36958 1.34148 1.36480 1.47029 1.89490 2.27061 2.37282 2.62656 2.67102 3.07239 3.22751 3.92678 3.93409 4.02155 4.04396 4.13767 4.22679 4.31789 4.34199 4.36708 4.37900 4.40110 4.40870 4.52352 4.64969 4.71865 4.73199 4.83415 4.96255 5.03895 5.14851 5.18921 5.28436 5.42619 5.46492 5.69046 6.14962 6.30178 6.44320 6.58125 6.76187 7.34870 8.90051 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.004993 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.683334 B = 5606.324186 C = 6073.754368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.202 3.798 4 C -0.328 4.328 5 C 0.203 3.797 6 O -0.329 6.329 7 C 0.015 3.985 8 C -0.253 4.253 9 C 0.195 3.805 10 O -0.304 6.304 11 C 0.100 3.900 12 C -0.042 4.042 13 C -0.472 4.472 14 H 0.025 0.975 15 C 0.017 3.983 16 N -0.951 5.951 17 Si 0.939 3.061 18 H -0.258 1.258 19 H -0.301 1.301 20 H -0.237 1.237 21 C -0.180 4.180 22 C -0.160 4.160 23 C -0.295 4.295 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.169 0.831 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.432 -8.769 -7.409 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.156 3.844 4 C -0.347 4.347 5 C 0.157 3.843 6 O -0.243 6.243 7 C -0.079 4.079 8 C -0.273 4.273 9 C 0.148 3.852 10 O -0.216 6.216 11 C 0.026 3.974 12 C -0.043 4.043 13 C -0.510 4.510 14 H 0.043 0.957 15 C -0.180 4.180 16 N -0.591 5.591 17 Si 0.763 3.237 18 H -0.182 1.182 19 H -0.229 1.229 20 H -0.160 1.160 21 C -0.217 4.217 22 C -0.197 4.197 23 C -0.315 4.315 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.187 0.813 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.130 -8.536 -7.261 23.039 hybrid contribution 0.114 -0.088 0.814 0.827 sum -20.016 -8.624 -6.447 22.728 Atomic orbital electron populations 1.23457 0.75868 1.06007 1.02633 1.86070 1.24050 1.25995 1.87835 1.18334 0.90796 0.84583 0.90703 1.21262 1.01727 0.90361 1.21375 1.18182 0.89448 0.85592 0.91112 1.86081 1.21572 1.28710 1.87888 1.23465 0.75815 1.05901 1.02701 1.19459 0.91466 0.97701 1.18691 1.18581 0.83243 0.92951 0.90466 1.86286 1.14302 1.34956 1.86098 1.22601 0.91370 0.83251 1.00213 1.19285 0.88367 0.95984 1.00682 1.20250 1.45050 0.93591 0.92113 0.95669 1.25864 0.94019 1.00484 0.97635 1.70067 1.50965 1.31393 1.06695 0.85931 0.80533 0.80622 0.76591 1.18249 1.22860 1.15989 1.23074 1.01365 0.95030 1.02251 1.22992 1.02744 1.02461 0.91524 1.20415 0.93589 0.97259 1.20228 0.85797 0.91491 0.91122 0.81348 0.85913 0.90965 0.91364 0.86053 0.90495 0.92942 0.92720 0.89978 0.87084 0.90174 0.87251 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.99 10.49 -92.32 -0.97 -8.96 16 3 C 0.20 5.93 6.68 22.48 0.15 6.08 16 4 C -0.33 -8.46 8.02 22.48 0.18 -8.28 16 5 C 0.20 6.34 6.68 22.48 0.15 6.49 16 6 O -0.33 -8.93 10.49 -92.34 -0.97 -9.90 16 7 C 0.01 0.22 9.81 113.37 1.11 1.33 16 8 C -0.25 -9.81 9.92 22.48 0.22 -9.59 16 9 C 0.20 7.93 6.67 22.48 0.15 8.08 16 10 O -0.30 -14.34 9.51 -92.30 -0.88 -15.22 16 11 C 0.10 4.24 4.69 71.98 0.34 4.58 16 12 C -0.04 -1.97 1.26 -52.90 -0.07 -2.03 16 13 C -0.47 -27.95 8.82 25.60 0.23 -27.72 16 14 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 15 C 0.02 1.00 5.47 84.65 0.46 1.46 16 16 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 17 Si 0.94 45.14 24.89 68.60 1.71 46.84 16 18 H -0.26 -11.53 7.03 99.48 0.70 -10.83 16 19 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.24 -10.26 5.69 99.48 0.57 -9.69 16 21 C -0.18 -7.01 7.52 30.59 0.23 -6.78 16 22 C -0.16 -6.19 9.89 30.62 0.30 -5.88 16 23 C -0.30 -10.32 8.97 22.48 0.20 -10.12 16 24 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 26 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.17 2.89 4.52 -2.91 -0.01 2.88 16 28 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 30 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 31 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 32 H 0.08 2.68 7.43 -2.39 -0.02 2.66 16 33 H 0.05 2.22 6.23 -2.39 -0.01 2.20 16 34 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 35 H 0.08 3.39 6.92 -2.39 -0.02 3.37 16 36 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.11 3.46 8.08 -2.39 -0.02 3.44 16 39 H 0.14 4.60 6.31 -2.91 -0.02 4.58 16 Total: -1.00 -76.09 320.52 4.87 -71.23 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.90 Total: 18.53 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 4.77 Total: -41.08 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.30 Total: -61.43 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -2.82 Total: -34.08 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.71 Total: 46.84 kcal Total: -76.09 4.87 -71.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.434 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds