Wall clock time and date at job start Mon Mar 30 2020 23:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47311 * 2 1 4 4 C 1.42900 * 113.99827 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47204 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47208 * 180.02562 * 5 4 3 7 7 O 1.45200 * 109.47190 * 179.97438 * 6 5 4 8 8 C 1.34701 * 117.00169 * 179.97438 * 7 6 5 9 9 O 1.21471 * 120.00074 * 0.02562 * 8 7 6 10 10 C 1.47769 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.39960 * 120.03302 * 359.97438 * 10 8 7 12 12 C 1.38317 * 120.35753 * 180.02562 * 11 10 8 13 13 C 1.37755 * 120.41703 * 359.97438 * 12 11 10 14 14 C 1.40757 * 120.05004 * 0.02562 * 13 12 11 15 15 C 1.41439 * 120.17704 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99698 * 24.41558 * 15 14 13 17 17 C 1.39932 * 120.00172 * 204.41934 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.84828 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.84744 * 17 15 14 20 20 H 1.48496 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46953 * 120.00169 * 19 17 15 22 22 H 1.48506 * 109.46942 * 240.00042 * 19 17 15 23 23 C 1.39059 * 120.03051 * 180.02562 * 10 8 7 24 24 H 1.08997 * 109.47097 * 300.00597 * 1 2 3 25 25 H 1.08999 * 109.46702 * 59.99967 * 1 2 3 26 26 H 1.08992 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47097 * 239.99403 * 2 1 3 28 28 H 1.08999 * 109.46702 * 120.00033 * 2 1 3 29 29 H 1.08998 * 109.47531 * 60.00177 * 4 3 2 30 30 H 1.09004 * 109.47211 * 299.99908 * 4 3 2 31 31 H 1.08998 * 109.46696 * 59.99709 * 5 4 3 32 32 H 1.09000 * 109.46565 * 299.99863 * 5 4 3 33 33 H 1.09004 * 109.47581 * 59.99695 * 6 5 4 34 34 H 1.09004 * 109.47091 * 299.99881 * 6 5 4 35 35 H 1.08008 * 119.82112 * 359.97438 * 11 10 8 36 36 H 1.08005 * 119.79035 * 180.02562 * 12 11 10 37 37 H 1.08001 * 119.97827 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.20114 * 359.70048 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8256 2.9382 -0.0001 6 6 5.3508 3.0589 -0.0001 7 8 5.7253 4.4618 -0.0014 8 6 7.0426 4.7431 -0.0011 9 8 7.8563 3.8412 -0.0002 10 6 7.4979 6.1489 -0.0029 11 6 6.5610 7.1887 -0.0055 12 6 6.9797 8.5070 -0.0077 13 6 8.3230 8.8121 -0.0069 14 6 9.2802 7.7801 -0.0042 15 6 10.6602 8.0903 -0.0039 16 1 10.9999 9.0404 0.3812 17 6 11.5852 7.1662 -0.5025 18 7 11.1830 6.1894 -1.2742 19 14 13.3944 7.3274 -0.0662 20 1 13.5879 8.5071 0.8148 21 1 13.8438 6.1021 0.6423 22 1 14.1896 7.5008 -1.3083 23 6 8.8577 6.4401 -0.0030 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8341 0.9763 -0.8891 30 1 3.8334 0.9765 0.8908 31 1 3.4224 3.4223 0.8894 32 1 3.4233 3.4212 -0.8906 33 1 5.7536 2.5749 -0.8899 34 1 5.7535 2.5758 0.8901 35 1 5.5053 6.9604 -0.0066 36 1 6.2488 9.3021 -0.0093 37 1 8.6421 9.8439 -0.0091 38 1 11.8242 5.5491 -1.6201 39 1 9.5843 5.6411 0.0030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096410831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:08 Heat of formation + Delta-G solvation = -133.072767 kcal Electronic energy + Delta-G solvation = -20350.170380 eV Core-core repulsion = 17029.062908 eV Total energy + Delta-G solvation = -3321.107472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.78616 -38.37397 -37.40530 -35.91913 -33.79467 -33.32591 -31.06467 -30.24063 -29.51439 -26.02538 -25.27826 -23.11567 -22.96228 -21.52482 -20.99470 -19.79692 -17.84916 -17.08151 -16.77907 -16.30752 -15.91073 -15.87651 -14.95290 -14.64271 -14.58696 -14.43958 -13.53806 -13.31379 -13.15891 -12.90787 -12.66810 -12.43011 -12.02602 -11.99622 -11.71325 -11.59530 -11.27560 -11.17503 -11.15477 -11.09989 -10.77077 -10.52601 -10.20704 -10.19218 -9.86307 -9.73780 -9.49776 -9.26186 -7.75933 -7.57306 -6.84690 -4.45272 1.96547 2.75813 2.92453 3.05693 3.10112 3.12166 3.58429 3.66904 3.88918 4.56109 4.70781 4.78419 4.79602 4.96158 5.02657 5.09174 5.21067 5.25587 5.41249 5.43465 5.52825 5.58378 5.70031 5.79901 5.94561 6.02957 6.13828 6.39789 6.62745 6.90902 6.93139 6.94546 6.97837 7.15389 7.29674 7.66962 7.74113 7.89501 8.08749 8.42799 8.53888 8.75355 8.77436 10.10660 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.002889 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.397791 B = 9690.050921 C =10448.789445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.067 3.933 5 C -0.118 4.118 6 C 0.070 3.930 7 O -0.354 6.354 8 C 0.513 3.487 9 O -0.519 6.519 10 C -0.115 4.115 11 C -0.193 4.193 12 C -0.104 4.104 13 C -0.201 4.201 14 C 0.095 3.905 15 C -0.459 4.459 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.089 4.089 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.284 0.716 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 -9.267 1.701 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.010 4.010 5 C -0.156 4.156 6 C -0.005 4.005 7 O -0.272 6.272 8 C 0.360 3.640 9 O -0.408 6.408 10 C -0.116 4.116 11 C -0.213 4.213 12 C -0.122 4.122 13 C -0.221 4.221 14 C 0.092 3.908 15 C -0.488 4.488 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.411 5.411 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.109 4.109 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.537 -9.610 1.552 15.873 hybrid contribution 1.026 -0.467 0.026 1.127 sum -11.511 -10.077 1.578 15.380 Atomic orbital electron populations 1.21746 0.93696 1.02203 1.03244 1.22466 0.95637 0.83754 1.00138 1.87870 1.20955 1.26488 1.95472 1.22291 0.81340 0.96687 1.00632 1.21373 0.93706 0.95409 1.05080 1.22671 0.94462 0.80871 1.02491 1.86572 1.27523 1.28075 1.85016 1.21887 0.79269 0.91079 0.71781 1.90760 1.54511 1.48583 1.46966 1.18831 0.94970 0.87208 1.10638 1.20576 0.97205 0.92196 1.11342 1.20518 0.95425 0.95030 1.01240 1.21187 0.92531 0.97990 1.10388 1.17553 0.93422 0.90447 0.89373 1.19600 0.90614 1.02561 1.36041 0.89880 1.25974 1.02015 0.94054 0.92588 1.69787 1.37535 1.12015 1.21784 0.86219 0.81385 0.79591 0.79334 1.18284 1.19573 1.19893 1.21655 0.92059 0.98059 0.99104 0.91792 0.91790 0.91126 0.93357 0.93369 0.92911 0.92927 0.89890 0.89871 0.91390 0.91434 0.87810 0.88484 0.88316 0.90467 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.47 6.66 37.16 0.25 0.71 16 3 O -0.39 -4.35 10.34 -35.23 -0.36 -4.71 16 4 C 0.07 0.69 5.94 37.16 0.22 0.91 16 5 C -0.12 -1.41 5.96 -26.73 -0.16 -1.57 16 6 C 0.07 1.03 5.47 37.15 0.20 1.23 16 7 O -0.35 -6.73 9.46 -40.49 -0.38 -7.11 16 8 C 0.51 11.62 7.90 34.63 0.27 11.90 16 9 O -0.52 -12.72 16.12 -19.24 -0.31 -13.03 16 10 C -0.12 -2.79 5.87 -105.05 -0.62 -3.41 16 11 C -0.19 -4.29 9.62 -38.91 -0.37 -4.66 16 12 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 13 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 14 C 0.09 2.48 5.57 -106.87 -0.60 1.89 16 15 C -0.46 -11.92 9.05 -37.73 -0.34 -12.26 16 16 H 0.08 2.04 7.91 -52.48 -0.41 1.63 16 17 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 18 N -0.79 -20.60 10.95 55.55 0.61 -19.99 16 19 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.09 -2.37 8.23 -38.42 -0.32 -2.69 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 2.07 7.59 -52.48 -0.40 1.67 16 36 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.14 3.83 5.74 -52.49 -0.30 3.53 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -29.15 338.49 -8.07 -37.22 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.74 Total: 3.69 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.94 Total: -14.66 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.61 Total: -19.99 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.06 Total: -24.86 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.15 -8.07 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096410831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.855 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds