Wall clock time and date at job start Tue Mar 31 2020 00:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47292 * 300.00197 * 3 2 1 6 6 H 1.48502 * 109.47124 * 60.00453 * 3 2 1 7 7 C 1.38809 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00219 * 197.58820 * 7 2 1 9 9 N 1.36938 * 119.99835 * 17.58832 * 7 2 1 10 10 C 1.46967 * 120.59247 * 208.20066 * 9 7 2 11 11 C 1.53374 * 108.63652 * 235.24876 * 10 9 7 12 12 N 1.46964 * 108.63374 * 310.57836 * 11 10 9 13 13 C 1.34773 * 120.59185 * 235.20087 * 12 11 10 14 14 O 1.21278 * 120.00383 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99793 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.47138 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47100 * 179.97438 * 16 15 13 18 18 C 1.34513 * 125.79190 * 89.99914 * 17 16 15 19 19 C 1.41374 * 106.84239 * 180.02562 * 18 17 16 20 20 C 1.34506 * 106.84283 * 0.02562 * 19 18 17 21 21 O 1.34305 * 125.78736 * 270.02469 * 17 16 15 22 22 C 1.46973 * 118.81343 * 55.47836 * 12 11 10 23 23 C 1.46963 * 120.59401 * 28.22922 * 9 7 2 24 24 H 0.96993 * 119.99988 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.60542 * 115.50483 * 10 9 7 26 26 H 1.09000 * 109.75398 * 355.08001 * 10 9 7 27 27 H 1.08999 * 109.60908 * 190.83391 * 11 10 9 28 28 H 1.08997 * 109.74757 * 70.40592 * 11 10 9 29 29 H 1.08998 * 109.47239 * 59.99720 * 15 13 12 30 30 H 1.08997 * 109.47100 * 299.99958 * 15 13 12 31 31 H 1.09000 * 109.46783 * 60.00222 * 16 15 13 32 32 H 1.08999 * 109.46756 * 300.00384 * 16 15 13 33 33 H 1.08002 * 126.57365 * 0.05871 * 18 17 16 34 34 H 1.08004 * 126.58007 * 179.97438 * 19 18 17 35 35 H 1.08006 * 125.78980 * 180.26641 * 20 19 18 36 36 H 1.09001 * 109.60597 * 64.26150 * 22 12 11 37 37 H 1.08995 * 109.60713 * 184.77368 * 22 12 11 38 38 H 1.09006 * 109.60488 * 244.49522 * 23 9 7 39 39 H 1.08997 * 109.61293 * 4.83214 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0524 -1.2241 0.2821 9 7 1.3737 -2.3601 -0.3594 10 6 1.8125 -3.6538 0.1826 11 6 2.1178 -4.5973 -0.9874 12 7 0.9839 -4.5687 -1.9219 13 6 0.3579 -5.7086 -2.2758 14 8 0.7289 -6.7703 -1.8220 15 6 -0.8032 -5.6639 -3.2355 16 6 -1.3285 -7.0822 -3.4669 17 6 -2.4900 -7.0374 -4.4261 18 6 -2.4082 -7.1321 -5.7654 19 6 -3.7282 -7.0421 -6.2637 20 6 -4.5376 -6.8972 -5.1992 21 8 -3.7822 -6.8957 -4.0887 22 6 0.5487 -3.2757 -2.4683 23 6 0.2398 -2.3316 -1.2939 24 1 -0.4850 0.8400 0.0004 25 1 1.0207 -4.0797 0.7989 26 1 2.7104 -3.5154 0.7849 27 1 2.2577 -5.6113 -0.6128 28 1 3.0221 -4.2684 -1.4994 29 1 -0.4746 -5.2385 -4.1838 30 1 -1.5975 -5.0465 -2.8163 31 1 -1.6573 -7.5070 -2.5184 32 1 -0.5343 -7.6999 -3.8859 33 1 -1.5071 -7.2540 -6.3481 34 1 -4.0289 -7.0812 -7.3003 35 1 -5.6131 -6.8035 -5.2316 36 1 1.3433 -2.8520 -3.0825 37 1 -0.3479 -3.4168 -3.0719 38 1 -0.6640 -2.6634 -0.7827 39 1 0.0979 -1.3171 -1.6662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104073397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:44 Heat of formation + Delta-G solvation = 4.097457 kcal Electronic energy + Delta-G solvation = -21485.723395 eV Core-core repulsion = 18202.856822 eV Total energy + Delta-G solvation = -3282.866574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.63870 -39.67853 -36.89351 -34.10510 -33.88106 -32.87416 -31.42505 -30.22711 -28.89409 -26.94902 -24.72594 -23.45065 -22.62971 -21.83644 -20.65237 -20.22008 -18.54443 -17.66837 -16.95360 -16.14049 -16.04138 -15.53535 -15.38773 -14.77234 -14.47572 -13.90095 -13.70082 -13.38613 -13.25304 -13.18352 -12.91807 -12.75679 -12.53528 -12.18743 -11.99279 -11.57639 -11.36448 -11.10390 -10.87795 -10.75888 -10.50528 -10.26420 -10.06823 -10.01354 -9.86572 -9.42527 -8.63101 -8.53526 -8.27002 -6.74600 -5.88852 -3.33094 1.63384 2.50991 2.89896 2.94973 3.31464 3.39919 3.41761 3.47295 4.41687 4.52772 4.86934 4.90914 4.96341 5.01549 5.14240 5.24790 5.32000 5.52221 5.64450 5.71494 5.76906 5.84043 5.90728 5.91798 5.93381 6.07684 6.10590 6.18501 6.31864 6.40652 6.41597 6.76005 6.90229 7.06317 7.17382 7.42693 7.69817 7.88693 8.32668 8.51705 9.08893 9.71495 10.28433 11.18959 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.003768 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.248966 B = 7428.813415 C = 8183.539615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.596 5.596 13 C 0.511 3.489 14 O -0.562 6.562 15 C -0.136 4.136 16 C -0.024 4.024 17 C -0.003 4.003 18 C -0.214 4.214 19 C -0.215 4.215 20 C -0.046 4.046 21 O -0.175 6.175 22 C 0.078 3.922 23 C 0.157 3.843 24 H 0.255 0.745 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.201 0.799 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -11.182 -11.047 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.328 5.328 13 C 0.299 3.701 14 O -0.442 6.442 15 C -0.176 4.176 16 C -0.061 4.061 17 C -0.054 4.054 18 C -0.233 4.233 19 C -0.234 4.234 20 C -0.114 4.114 21 O -0.071 6.071 22 C -0.046 4.046 23 C 0.030 3.970 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.217 0.783 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.276 -11.526 -10.479 16.447 hybrid contribution 0.238 1.075 -0.362 1.159 sum -5.038 -10.452 -10.841 15.879 Atomic orbital electron populations 1.70025 1.05313 1.25633 1.53653 1.25070 0.95300 0.98561 1.00623 0.86205 0.79406 0.83708 0.77340 1.20184 1.21462 1.21661 1.19253 0.92901 0.84698 1.41619 0.91401 1.44000 1.36710 1.01587 1.49154 1.21294 0.98433 0.87022 0.92790 1.22205 0.87714 1.01082 0.91887 1.48080 1.32870 1.06853 1.44961 1.20448 0.83865 0.83651 0.82119 1.90640 1.67130 1.29561 1.56836 1.21660 0.97570 0.98120 1.00217 1.19865 0.91233 0.97056 0.97980 1.22549 0.83196 1.04591 0.95020 1.21607 0.98562 1.09438 0.93709 1.21823 0.93160 1.08366 1.00044 1.24018 0.97315 1.06719 0.83344 1.84049 1.17345 1.70553 1.35112 1.22797 0.99176 0.83876 0.98739 1.21265 0.89276 0.98667 0.87787 0.93518 0.95872 0.91525 0.89978 0.91977 0.88662 0.88428 0.89272 0.88127 0.83510 0.83606 0.78261 0.91692 0.90912 0.95796 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.19 11.20 55.49 0.62 -24.57 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.32 2.97 -171.76 -0.51 -14.83 16 10 C 0.13 2.74 6.67 -3.59 -0.02 2.72 16 11 C 0.10 1.74 6.59 -3.60 -0.02 1.71 16 12 N -0.60 -10.58 2.94 -172.21 -0.51 -11.09 16 13 C 0.51 8.56 7.70 -10.98 -0.08 8.47 16 14 O -0.56 -10.78 15.39 5.56 0.09 -10.70 16 15 C -0.14 -1.76 4.02 -27.88 -0.11 -1.87 16 16 C -0.02 -0.29 5.04 -27.88 -0.14 -0.43 16 17 C 0.00 -0.04 6.57 -35.63 -0.23 -0.27 16 18 C -0.21 -2.35 10.81 -39.71 -0.43 -2.78 16 19 C -0.21 -2.13 10.91 -39.71 -0.43 -2.56 16 20 C -0.05 -0.46 12.09 29.41 0.36 -0.10 16 21 O -0.17 -2.19 10.65 5.69 0.06 -2.13 16 22 C 0.08 1.37 6.54 -3.36 -0.02 1.35 16 23 C 0.16 3.51 5.54 -3.37 -0.02 3.49 16 24 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 27 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.08 7.90 -51.93 -0.41 0.67 16 30 H 0.10 1.26 7.73 -51.93 -0.40 0.86 16 31 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.06 5.91 -51.93 -0.31 0.75 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 2.48 5.98 -51.93 -0.31 2.17 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -31.09 322.61 -7.37 -38.45 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.55 Total: 1.27 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.40 Total: 2.84 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.39 Total: -50.50 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.15 Total: -12.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.09 -7.37 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104073397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.550 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds