Wall clock time and date at job start Tue Mar 31 2020 00:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47292 * 300.00197 * 3 2 1 6 6 H 1.48502 * 109.47124 * 60.00453 * 3 2 1 7 7 C 1.38809 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00219 * 197.58820 * 7 2 1 9 9 N 1.36938 * 119.99835 * 17.58832 * 7 2 1 10 10 C 1.46967 * 120.59247 * 208.20066 * 9 7 2 11 11 C 1.53374 * 108.63652 * 235.24876 * 10 9 7 12 12 N 1.46964 * 108.63374 * 310.57836 * 11 10 9 13 13 C 1.34773 * 120.59185 * 235.20087 * 12 11 10 14 14 O 1.21278 * 120.00383 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99793 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.47138 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47100 * 179.97438 * 16 15 13 18 18 C 1.34513 * 125.79190 * 89.99914 * 17 16 15 19 19 C 1.41374 * 106.84239 * 180.02562 * 18 17 16 20 20 C 1.34506 * 106.84283 * 0.02562 * 19 18 17 21 21 O 1.34305 * 125.78736 * 270.02469 * 17 16 15 22 22 C 1.46973 * 118.81343 * 55.47836 * 12 11 10 23 23 C 1.46963 * 120.59401 * 28.22922 * 9 7 2 24 24 H 0.96993 * 119.99988 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.60542 * 115.50483 * 10 9 7 26 26 H 1.09000 * 109.75398 * 355.08001 * 10 9 7 27 27 H 1.08999 * 109.60908 * 190.83391 * 11 10 9 28 28 H 1.08997 * 109.74757 * 70.40592 * 11 10 9 29 29 H 1.08998 * 109.47239 * 59.99720 * 15 13 12 30 30 H 1.08997 * 109.47100 * 299.99958 * 15 13 12 31 31 H 1.09000 * 109.46783 * 60.00222 * 16 15 13 32 32 H 1.08999 * 109.46756 * 300.00384 * 16 15 13 33 33 H 1.08002 * 126.57365 * 0.05871 * 18 17 16 34 34 H 1.08004 * 126.58007 * 179.97438 * 19 18 17 35 35 H 1.08006 * 125.78980 * 180.26641 * 20 19 18 36 36 H 1.09001 * 109.60597 * 64.26150 * 22 12 11 37 37 H 1.08995 * 109.60713 * 184.77368 * 22 12 11 38 38 H 1.09006 * 109.60488 * 244.49522 * 23 9 7 39 39 H 1.08997 * 109.61293 * 4.83214 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0524 -1.2241 0.2821 9 7 1.3737 -2.3601 -0.3594 10 6 1.8125 -3.6538 0.1826 11 6 2.1178 -4.5973 -0.9874 12 7 0.9839 -4.5687 -1.9219 13 6 0.3579 -5.7086 -2.2758 14 8 0.7289 -6.7703 -1.8220 15 6 -0.8032 -5.6639 -3.2355 16 6 -1.3285 -7.0822 -3.4669 17 6 -2.4900 -7.0374 -4.4261 18 6 -2.4082 -7.1321 -5.7654 19 6 -3.7282 -7.0421 -6.2637 20 6 -4.5376 -6.8972 -5.1992 21 8 -3.7822 -6.8957 -4.0887 22 6 0.5487 -3.2757 -2.4683 23 6 0.2398 -2.3316 -1.2939 24 1 -0.4850 0.8400 0.0004 25 1 1.0207 -4.0797 0.7989 26 1 2.7104 -3.5154 0.7849 27 1 2.2577 -5.6113 -0.6128 28 1 3.0221 -4.2684 -1.4994 29 1 -0.4746 -5.2385 -4.1838 30 1 -1.5975 -5.0465 -2.8163 31 1 -1.6573 -7.5070 -2.5184 32 1 -0.5343 -7.6999 -3.8859 33 1 -1.5071 -7.2540 -6.3481 34 1 -4.0289 -7.0812 -7.3003 35 1 -5.6131 -6.8035 -5.2316 36 1 1.3433 -2.8520 -3.0825 37 1 -0.3479 -3.4168 -3.0719 38 1 -0.6640 -2.6634 -0.7827 39 1 0.0979 -1.3171 -1.6662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104073397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:43 Heat of formation + Delta-G solvation = -14.095402 kcal Electronic energy + Delta-G solvation = -21486.512297 eV Core-core repulsion = 18202.856822 eV Total energy + Delta-G solvation = -3283.655475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.44780 -41.08412 -38.50825 -35.60521 -35.12845 -33.71960 -33.18133 -31.87211 -29.93999 -28.57736 -26.04304 -25.06269 -24.17099 -22.62381 -22.09903 -21.21085 -20.06952 -18.90153 -18.21443 -17.53596 -17.18200 -16.82360 -16.71316 -16.49318 -15.54512 -15.47108 -15.25780 -15.07574 -14.82119 -14.46067 -13.83217 -13.68162 -13.58444 -13.38840 -13.26890 -13.03889 -12.98701 -12.68907 -12.47198 -12.20601 -12.08771 -12.01062 -11.88296 -11.65698 -10.86893 -10.78226 -10.59689 -9.82654 -9.34481 -8.66445 -7.89367 -5.37478 0.82125 1.47801 1.50958 1.60878 1.61706 1.73808 2.00550 2.23687 2.51586 3.25414 3.47578 3.59423 3.91779 3.99187 4.04946 4.20159 4.24110 4.27854 4.34095 4.39260 4.52634 4.58016 4.67035 4.73905 4.79495 4.81962 4.96947 5.00015 5.06926 5.10822 5.22966 5.28335 5.53131 5.60690 5.65827 5.67216 6.26734 6.35139 6.49283 7.10361 7.15500 7.78044 8.31460 9.15954 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.003768 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.248966 B = 7428.813415 C = 8183.539615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.603 5.603 13 C 0.511 3.489 14 O -0.586 6.586 15 C -0.127 4.127 16 C -0.016 4.016 17 C -0.028 4.028 18 C -0.214 4.214 19 C -0.226 4.226 20 C -0.047 4.047 21 O -0.197 6.197 22 C 0.095 3.905 23 C 0.161 3.839 24 H 0.252 0.748 25 H 0.007 0.993 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.234 0.766 36 H 0.072 0.928 37 H 0.107 0.893 38 H -0.001 1.001 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 -11.490 -12.958 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.395 4.395 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.019 4.019 12 N -0.335 5.335 13 C 0.301 3.699 14 O -0.468 6.468 15 C -0.166 4.166 16 C -0.053 4.053 17 C -0.077 4.077 18 C -0.233 4.233 19 C -0.245 4.245 20 C -0.114 4.114 21 O -0.094 6.094 22 C -0.028 4.028 23 C 0.034 3.966 24 H 0.061 0.939 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.179 0.821 34 H 0.187 0.813 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.017 0.983 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.228 -11.861 -12.405 17.941 hybrid contribution 0.174 1.102 0.263 1.146 sum -5.054 -10.759 -12.142 16.992 Atomic orbital electron populations 1.70168 1.06655 1.26044 1.55007 1.25785 0.96003 1.01457 1.00851 0.85201 0.78618 0.79731 0.76798 1.19173 1.21289 1.22245 1.19554 0.93149 0.85757 1.41082 0.91336 1.44277 1.36935 1.02101 1.50003 1.21359 0.97990 0.86261 0.93869 1.22003 0.88403 1.00377 0.91125 1.48159 1.32934 1.07280 1.45097 1.21062 0.84080 0.82750 0.82006 1.90629 1.67928 1.30400 1.57833 1.21657 0.95827 0.99040 1.00110 1.19727 0.91653 0.96412 0.97538 1.22509 0.83147 1.06694 0.95389 1.21926 0.99752 1.08178 0.93430 1.22189 0.92700 1.08271 1.01312 1.24789 0.98721 1.05276 0.82638 1.84032 1.17778 1.71094 1.36525 1.22571 1.00947 0.82632 0.96693 1.21119 0.88009 0.98509 0.88914 0.93882 0.97477 0.90953 0.89507 0.91034 0.86230 0.88235 0.90734 0.87637 0.82065 0.81318 0.75026 0.90920 0.87533 0.98328 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.03 11.20 21.65 0.24 -52.79 16 2 C -0.05 -2.42 4.90 84.86 0.42 -2.01 16 3 Si 0.97 43.13 29.59 68.60 2.03 45.16 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.27 -14.08 9.58 84.03 0.80 -13.27 16 8 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 9 N -0.61 -29.71 2.97 -697.34 -2.07 -31.78 16 10 C 0.13 5.50 6.67 86.42 0.58 6.08 16 11 C 0.11 3.74 6.59 86.42 0.57 4.31 16 12 N -0.60 -20.59 2.94 -817.14 -2.40 -23.00 16 13 C 0.51 16.37 7.70 87.66 0.67 17.05 16 14 O -0.59 -21.97 15.39 -3.02 -0.05 -22.01 16 15 C -0.13 -3.04 4.02 29.85 0.12 -2.92 16 16 C -0.02 -0.36 5.04 29.85 0.15 -0.21 16 17 C -0.03 -0.63 6.57 24.83 0.16 -0.47 16 18 C -0.21 -4.22 10.81 22.19 0.24 -3.98 16 19 C -0.23 -3.89 10.91 22.19 0.24 -3.64 16 20 C -0.05 -0.82 12.09 66.97 0.81 -0.02 16 21 O -0.20 -4.69 10.65 -2.55 -0.03 -4.72 16 22 C 0.10 3.19 6.54 86.56 0.57 3.76 16 23 C 0.16 7.26 5.54 86.56 0.48 7.74 16 24 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.07 2.88 7.94 -2.39 -0.02 2.86 16 27 H 0.09 3.02 6.99 -2.39 -0.02 3.00 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.12 2.32 7.90 -2.39 -0.02 2.30 16 30 H 0.10 2.40 7.73 -2.39 -0.02 2.38 16 31 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 32 H 0.11 2.29 8.10 -2.39 -0.02 2.27 16 33 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.23 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.11 2.84 5.91 -2.39 -0.01 2.83 16 38 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 39 H 0.08 3.79 5.98 -2.39 -0.01 3.77 16 Total: -1.00 -67.00 322.61 4.58 -62.42 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.04 Total: 14.29 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.81 Total: 12.42 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -4.23 Total: -107.57 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.07 Total: -26.73 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.00 4.58 -62.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104073397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.328 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds