Wall clock time and date at job start Tue Mar 31 2020 00:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86804 * 119.99451 * 2 1 4 4 H 1.48498 * 109.47338 * 274.99137 * 3 2 1 5 5 H 1.48497 * 109.47323 * 34.99619 * 3 2 1 6 6 H 1.48503 * 109.46448 * 154.99255 * 3 2 1 7 7 C 1.40040 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00315 * 185.55834 * 7 2 1 9 9 C 1.46381 * 120.00086 * 5.55548 * 7 2 1 10 10 O 1.21692 * 119.99611 * 354.48515 * 9 7 2 11 11 N 1.34773 * 120.00341 * 174.49345 * 9 7 2 12 12 C 1.46496 * 119.99965 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46940 * 185.21580 * 12 11 9 14 14 H 1.09000 * 109.46872 * 305.29293 * 13 12 11 15 15 C 1.50697 * 109.47188 * 65.29085 * 13 12 11 16 16 C 1.34515 * 125.79381 * 260.00107 * 15 13 12 17 17 C 1.41380 * 106.83856 * 179.97438 * 16 15 13 18 18 C 1.34505 * 106.84675 * 359.97438 * 17 16 15 19 19 O 1.34307 * 125.78560 * 79.69525 * 15 13 12 20 20 N 1.46901 * 109.47110 * 185.29447 * 13 12 11 21 21 C 1.48527 * 111.00018 * 59.40365 * 20 13 12 22 22 C 1.54945 * 103.22884 * 159.72221 * 21 20 13 23 23 C 1.54596 * 102.91512 * 322.58742 * 22 21 20 24 24 C 1.47903 * 110.99751 * 176.79954 * 20 13 12 25 25 H 0.96998 * 120.00264 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99334 * 359.97438 * 11 9 7 27 27 H 1.09005 * 109.47295 * 65.22154 * 12 11 9 28 28 H 1.08993 * 109.47170 * 305.21773 * 12 11 9 29 29 H 1.07998 * 126.57583 * 0.03454 * 16 15 13 30 30 H 1.08011 * 126.57127 * 179.97438 * 17 16 15 31 31 H 1.08004 * 125.79264 * 180.02562 * 18 17 16 32 32 H 1.09003 * 110.67256 * 278.15510 * 21 20 13 33 33 H 1.08998 * 110.66824 * 41.28650 * 21 20 13 34 34 H 1.08996 * 110.72632 * 204.22867 * 22 21 20 35 35 H 1.09001 * 110.72313 * 80.93736 * 22 21 20 36 36 H 1.09004 * 110.30401 * 263.03660 * 23 22 21 37 37 H 1.09001 * 110.30874 * 140.88003 * 23 22 21 38 38 H 1.08994 * 109.91935 * 333.51028 * 24 20 13 39 39 H 1.09005 * 109.91525 * 94.80747 * 24 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.3826 2.1075 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5870 1.4121 0.5919 7 6 2.0070 -1.2127 -0.0005 8 1 3.0832 -1.2150 0.0900 9 6 1.2804 -2.4775 -0.1238 10 8 0.0635 -2.4823 -0.1248 11 7 1.9590 -3.6365 -0.2361 12 6 1.2317 -4.9021 -0.3600 13 6 2.2254 -6.0653 -0.3407 14 1 2.9773 -5.9137 -1.1151 15 6 2.8977 -6.1293 1.0065 16 6 4.1233 -5.6573 1.2973 17 6 4.3515 -5.9262 2.6664 18 6 3.2516 -6.5459 3.1306 19 8 2.3724 -6.6621 2.1219 20 7 1.5108 -7.3240 -0.5916 21 6 0.8225 -7.2921 -1.9074 22 6 0.5997 -8.7917 -2.2274 23 6 1.8898 -9.4546 -1.6925 24 6 2.4513 -8.4636 -0.6561 25 1 -0.4850 0.8400 0.0004 26 1 2.9290 -3.6324 -0.2355 27 1 0.6783 -4.9127 -1.2991 28 1 0.5361 -5.0045 0.4728 29 1 4.8022 -5.1662 0.6159 30 1 5.2389 -5.6810 3.2313 31 1 3.0996 -6.8884 4.1435 32 1 -0.1310 -6.7695 -1.8303 33 1 1.4569 -6.8277 -2.6623 34 1 0.5034 -8.9466 -3.3020 35 1 -0.2760 -9.1723 -1.7017 36 1 2.6043 -9.5999 -2.5027 37 1 1.6565 -10.4074 -1.2173 38 1 3.4353 -8.1157 -0.9701 39 1 2.5186 -8.9452 0.3195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119561395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:22 Heat of formation + Delta-G solvation = -15.961074 kcal Electronic energy + Delta-G solvation = -21907.932187 eV Core-core repulsion = 18624.195810 eV Total energy + Delta-G solvation = -3283.736377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32469 -39.10875 -37.19394 -34.49014 -32.66828 -32.48988 -31.63730 -29.40085 -28.88938 -27.33253 -25.61797 -22.98793 -21.66709 -21.18578 -20.73703 -19.81347 -19.56607 -17.28831 -17.22084 -16.11163 -15.84996 -15.55223 -15.20992 -14.80626 -14.35161 -13.90042 -13.74910 -13.44972 -12.95434 -12.73549 -12.56762 -12.51753 -12.26582 -12.17748 -11.72206 -11.44732 -11.27674 -11.14046 -11.07959 -10.99231 -10.74968 -10.64380 -10.41637 -10.19546 -9.64926 -8.82498 -8.47487 -8.21654 -7.59277 -7.48624 -6.16781 -4.60807 1.99516 2.85316 3.15358 3.22085 3.23285 3.26226 3.79214 4.14719 4.53426 4.57335 4.62487 4.80351 4.88804 5.12850 5.16903 5.23658 5.26294 5.32714 5.39489 5.44855 5.63030 5.69341 5.75542 5.81098 5.94026 5.97403 6.04025 6.09007 6.09746 6.23533 6.43126 6.54135 6.68201 6.84626 6.95854 7.45079 7.46444 7.93894 8.09900 8.35125 9.05244 9.54818 10.62653 10.81189 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.004880 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.523237 B = 5736.126525 C = 6740.551569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.765 5.765 12 C 0.142 3.858 13 C 0.147 3.853 14 H 0.073 0.927 15 C 0.018 3.982 16 C -0.212 4.212 17 C -0.211 4.211 18 C -0.050 4.050 19 O -0.158 6.158 20 N -0.506 5.506 21 C 0.031 3.969 22 C -0.122 4.122 23 C -0.130 4.130 24 C 0.038 3.962 25 H 0.268 0.732 26 H 0.378 0.622 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.198 0.802 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -16.381 -0.978 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.421 5.421 12 C 0.017 3.983 13 C 0.038 3.962 14 H 0.091 0.909 15 C -0.034 4.034 16 C -0.232 4.232 17 C -0.230 4.230 18 C -0.118 4.118 19 O -0.052 6.052 20 N -0.231 5.231 21 C -0.096 4.096 22 C -0.160 4.160 23 C -0.168 4.168 24 C -0.090 4.090 25 H 0.079 0.921 26 H 0.210 0.790 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.214 0.786 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.093 -16.471 -0.528 17.570 hybrid contribution 1.878 1.096 -0.427 2.216 sum 7.971 -15.375 -0.955 17.344 Atomic orbital electron populations 1.70031 1.07060 1.27200 1.35379 1.25693 0.94579 1.00233 0.92632 0.86376 0.80261 0.81579 0.78637 1.19821 1.20450 1.18904 1.20863 0.93972 0.89508 1.53853 0.91462 1.18196 0.87138 0.82245 0.76341 1.90603 1.14069 1.86447 1.55136 1.46094 1.08481 1.05301 1.82250 1.20852 0.93187 0.82575 1.01721 1.20632 0.95230 0.91481 0.88843 0.90919 1.22059 0.93108 1.00386 0.87810 1.21500 0.97440 1.07283 0.96993 1.21716 1.00558 1.05284 0.95483 1.23972 0.89488 1.05286 0.93081 1.84077 1.41519 1.62707 1.16927 1.64741 1.25799 1.01739 1.30842 1.23321 0.99967 0.96973 0.89319 1.22477 0.98118 0.94733 1.00686 1.22397 0.97399 0.98834 0.98186 1.22844 0.94364 0.91954 0.99805 0.92147 0.79005 0.92577 0.91798 0.83772 0.83811 0.78567 0.89110 0.93314 0.91015 0.90602 0.91615 0.91083 0.93775 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.39 11.85 55.55 0.66 -22.73 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 3 Si 0.91 20.39 29.56 -169.99 -5.03 15.36 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.67 9.54 -35.63 -0.34 -16.01 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.22 7.74 -12.99 -0.10 16.12 16 10 O -0.58 -19.22 15.03 5.20 0.08 -19.14 16 11 N -0.76 -17.60 5.31 -61.72 -0.33 -17.93 16 12 C 0.14 2.87 5.02 -4.04 -0.02 2.85 16 13 C 0.15 2.32 1.71 -68.86 -0.12 2.20 16 14 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 15 C 0.02 0.29 4.98 -35.63 -0.18 0.11 16 16 C -0.21 -3.19 10.43 -39.70 -0.41 -3.60 16 17 C -0.21 -2.90 10.91 -39.71 -0.43 -3.33 16 18 C -0.05 -0.69 12.09 29.41 0.36 -0.33 16 19 O -0.16 -2.63 10.65 5.69 0.06 -2.57 16 20 N -0.51 -7.16 5.10 -223.89 -1.14 -8.30 16 21 C 0.03 0.39 5.38 -1.90 -0.01 0.38 16 22 C -0.12 -1.20 7.06 -24.87 -0.18 -1.38 16 23 C -0.13 -1.22 6.93 -25.38 -0.18 -1.40 16 24 C 0.04 0.45 5.95 -2.76 -0.02 0.43 16 25 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 26 H 0.38 7.74 7.96 -40.82 -0.32 7.41 16 27 H 0.06 1.14 6.65 -51.93 -0.35 0.80 16 28 H 0.06 1.48 8.13 -51.93 -0.42 1.05 16 29 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.09 1.22 7.54 -51.93 -0.39 0.83 16 33 H 0.05 0.59 8.00 -51.93 -0.42 0.18 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.51 7.68 -51.93 -0.40 0.11 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -35.54 327.03 -8.13 -43.67 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.64 Total: 8.24 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.72 Total: -1.55 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.81 Total: -48.95 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.14 Total: -21.71 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.54 -8.13 -43.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119561395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.713 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds