Wall clock time and date at job start Tue Mar 31 2020 00:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86804 * 119.99451 * 2 1 4 4 H 1.48498 * 109.47338 * 274.99137 * 3 2 1 5 5 H 1.48497 * 109.47323 * 34.99619 * 3 2 1 6 6 H 1.48503 * 109.46448 * 154.99255 * 3 2 1 7 7 C 1.40040 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00315 * 185.55834 * 7 2 1 9 9 C 1.46381 * 120.00086 * 5.55548 * 7 2 1 10 10 O 1.21692 * 119.99611 * 354.48515 * 9 7 2 11 11 N 1.34773 * 120.00341 * 174.49345 * 9 7 2 12 12 C 1.46496 * 119.99965 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46940 * 185.21580 * 12 11 9 14 14 H 1.09000 * 109.46872 * 305.29293 * 13 12 11 15 15 C 1.50697 * 109.47188 * 65.29085 * 13 12 11 16 16 C 1.34515 * 125.79381 * 260.00107 * 15 13 12 17 17 C 1.41380 * 106.83856 * 179.97438 * 16 15 13 18 18 C 1.34505 * 106.84675 * 359.97438 * 17 16 15 19 19 O 1.34307 * 125.78560 * 79.69525 * 15 13 12 20 20 N 1.46901 * 109.47110 * 185.29447 * 13 12 11 21 21 C 1.48527 * 111.00018 * 59.40365 * 20 13 12 22 22 C 1.54945 * 103.22884 * 159.72221 * 21 20 13 23 23 C 1.54596 * 102.91512 * 322.58742 * 22 21 20 24 24 C 1.47903 * 110.99751 * 176.79954 * 20 13 12 25 25 H 0.96998 * 120.00264 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99334 * 359.97438 * 11 9 7 27 27 H 1.09005 * 109.47295 * 65.22154 * 12 11 9 28 28 H 1.08993 * 109.47170 * 305.21773 * 12 11 9 29 29 H 1.07998 * 126.57583 * 0.03454 * 16 15 13 30 30 H 1.08011 * 126.57127 * 179.97438 * 17 16 15 31 31 H 1.08004 * 125.79264 * 180.02562 * 18 17 16 32 32 H 1.09003 * 110.67256 * 278.15510 * 21 20 13 33 33 H 1.08998 * 110.66824 * 41.28650 * 21 20 13 34 34 H 1.08996 * 110.72632 * 204.22867 * 22 21 20 35 35 H 1.09001 * 110.72313 * 80.93736 * 22 21 20 36 36 H 1.09004 * 110.30401 * 263.03660 * 23 22 21 37 37 H 1.09001 * 110.30874 * 140.88003 * 23 22 21 38 38 H 1.08994 * 109.91935 * 333.51028 * 24 20 13 39 39 H 1.09005 * 109.91525 * 94.80747 * 24 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.3826 2.1075 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5870 1.4121 0.5919 7 6 2.0070 -1.2127 -0.0005 8 1 3.0832 -1.2150 0.0900 9 6 1.2804 -2.4775 -0.1238 10 8 0.0635 -2.4823 -0.1248 11 7 1.9590 -3.6365 -0.2361 12 6 1.2317 -4.9021 -0.3600 13 6 2.2254 -6.0653 -0.3407 14 1 2.9773 -5.9137 -1.1151 15 6 2.8977 -6.1293 1.0065 16 6 4.1233 -5.6573 1.2973 17 6 4.3515 -5.9262 2.6664 18 6 3.2516 -6.5459 3.1306 19 8 2.3724 -6.6621 2.1219 20 7 1.5108 -7.3240 -0.5916 21 6 0.8225 -7.2921 -1.9074 22 6 0.5997 -8.7917 -2.2274 23 6 1.8898 -9.4546 -1.6925 24 6 2.4513 -8.4636 -0.6561 25 1 -0.4850 0.8400 0.0004 26 1 2.9290 -3.6324 -0.2355 27 1 0.6783 -4.9127 -1.2991 28 1 0.5361 -5.0045 0.4728 29 1 4.8022 -5.1662 0.6159 30 1 5.2389 -5.6810 3.2313 31 1 3.0996 -6.8884 4.1435 32 1 -0.1310 -6.7695 -1.8303 33 1 1.4569 -6.8277 -2.6623 34 1 0.5034 -8.9466 -3.3020 35 1 -0.2760 -9.1723 -1.7017 36 1 2.6043 -9.5999 -2.5027 37 1 1.6565 -10.4074 -1.2173 38 1 3.4353 -8.1157 -0.9701 39 1 2.5186 -8.9452 0.3195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119561395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:22 Heat of formation + Delta-G solvation = -42.695432 kcal Electronic energy + Delta-G solvation = -21909.091476 eV Core-core repulsion = 18624.195810 eV Total energy + Delta-G solvation = -3284.895665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.47969 -40.25882 -39.20766 -36.08214 -34.62814 -33.80455 -33.30115 -30.42857 -29.99913 -29.04918 -27.38268 -24.36963 -22.79774 -22.22787 -21.96327 -21.39178 -20.96225 -19.28478 -18.33823 -17.57927 -17.20446 -16.96723 -16.59245 -16.15748 -15.89501 -15.75434 -15.07929 -14.67204 -14.51783 -14.18707 -13.74687 -13.67012 -13.64306 -13.43676 -13.18844 -12.97745 -12.77217 -12.63503 -12.49407 -12.35268 -12.17316 -12.03142 -11.97949 -11.43403 -10.94079 -10.78422 -9.92025 -9.56120 -9.52089 -9.36490 -8.31127 -6.86926 0.83876 1.39877 1.41326 1.57440 1.74631 2.12326 2.23729 2.45651 2.61541 3.27102 3.53732 3.62113 3.68935 3.78703 3.97812 3.99408 4.14488 4.19999 4.30124 4.31301 4.55928 4.65378 4.66828 4.79897 4.89904 4.94823 4.97346 5.01061 5.04061 5.16898 5.21987 5.30179 5.31127 5.61414 5.82109 5.84905 5.86890 6.14862 6.23060 6.32532 6.85363 7.49417 8.46363 8.65663 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.004880 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.523237 B = 5736.126525 C = 6740.551569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.749 5.749 12 C 0.151 3.849 13 C 0.163 3.837 14 H 0.089 0.911 15 C -0.011 4.011 16 C -0.215 4.215 17 C -0.220 4.220 18 C -0.052 4.052 19 O -0.183 6.183 20 N -0.523 5.523 21 C 0.025 3.975 22 C -0.115 4.115 23 C -0.122 4.122 24 C 0.039 3.961 25 H 0.275 0.725 26 H 0.393 0.607 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.233 0.767 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -16.615 -1.081 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.404 5.404 12 C 0.025 3.975 13 C 0.053 3.947 14 H 0.106 0.894 15 C -0.062 4.062 16 C -0.235 4.235 17 C -0.239 4.239 18 C -0.119 4.119 19 O -0.079 6.079 20 N -0.249 5.249 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.088 4.088 25 H 0.085 0.915 26 H 0.227 0.773 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.177 0.823 30 H 0.188 0.812 31 H 0.249 0.751 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.747 -16.762 -0.638 18.918 hybrid contribution 1.054 1.095 -0.335 1.557 sum 9.801 -15.667 -0.973 18.506 Atomic orbital electron populations 1.70200 1.09632 1.29006 1.36317 1.26996 0.95498 1.04995 0.91122 0.84984 0.78892 0.74988 0.79275 1.18566 1.19761 1.17103 1.21396 0.95106 0.90067 1.54251 0.89411 1.18635 0.86777 0.84143 0.76121 1.90556 1.16281 1.87584 1.57605 1.45704 1.09127 1.05002 1.80614 1.20772 0.93745 0.83280 0.99659 1.20347 0.94083 0.90482 0.89745 0.89395 1.22143 0.93911 1.02159 0.87937 1.21848 0.97156 1.06414 0.98054 1.22094 1.01569 1.05133 0.95108 1.24794 0.88938 1.04383 0.93798 1.84057 1.42809 1.63297 1.17727 1.64696 1.26625 1.01597 1.31954 1.23378 0.98959 0.99037 0.88853 1.22464 0.98405 0.92408 1.02021 1.22395 0.97189 0.98446 0.98005 1.22869 0.94195 0.91417 1.00332 0.91517 0.77283 0.93267 0.95546 0.82343 0.81211 0.75102 0.91148 0.92865 0.88927 0.90896 0.89795 0.89833 0.93319 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.31 11.85 21.83 0.26 -51.06 16 2 C 0.03 1.64 5.50 85.30 0.47 2.11 16 3 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.57 -33.11 9.54 24.83 0.24 -32.87 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.54 32.42 7.74 86.36 0.67 33.09 16 10 O -0.63 -44.08 15.03 -4.32 -0.06 -44.14 16 11 N -0.75 -35.37 5.31 -467.41 -2.48 -37.86 16 12 C 0.15 6.39 5.02 86.38 0.43 6.82 16 13 C 0.16 5.19 1.71 44.17 0.08 5.26 16 14 H 0.09 2.49 7.98 -2.39 -0.02 2.48 16 15 C -0.01 -0.35 4.98 24.83 0.12 -0.23 16 16 C -0.22 -6.18 10.43 22.19 0.23 -5.95 16 17 C -0.22 -5.61 10.91 22.19 0.24 -5.37 16 18 C -0.05 -1.34 12.09 66.97 0.81 -0.53 16 19 O -0.18 -6.10 10.65 -2.57 -0.03 -6.13 16 20 N -0.52 -14.90 5.10 -862.24 -4.39 -19.29 16 21 C 0.02 0.63 5.38 86.65 0.47 1.09 16 22 C -0.11 -2.11 7.06 31.80 0.22 -1.88 16 23 C -0.12 -2.02 6.93 31.47 0.22 -1.80 16 24 C 0.04 0.88 5.95 86.44 0.51 1.39 16 25 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 26 H 0.39 16.08 7.96 -92.71 -0.74 15.34 16 27 H 0.05 2.13 6.65 -2.38 -0.02 2.12 16 28 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 29 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.17 3.31 8.06 -2.90 -0.02 3.29 16 31 H 0.23 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.07 2.02 7.54 -2.39 -0.02 2.00 16 33 H 0.05 1.27 8.00 -2.39 -0.02 1.25 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -80.40 327.03 0.35 -80.06 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.31 Total: 33.90 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.71 Total: 1.14 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -6.62 Total: -108.20 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.09 Total: -50.27 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -80.40 0.35 -80.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119561395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -80.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds