Wall clock time and date at job start Tue Mar 31 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48501 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47198 * 299.99936 * 3 2 1 6 6 H 1.48503 * 109.47060 * 59.99980 * 3 2 1 7 7 C 1.37881 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50690 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47408 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47469 * 179.97438 * 10 9 7 12 12 C 1.34728 * 117.00015 * 180.02562 * 11 10 9 13 13 O 1.21489 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.47584 * 120.00092 * 180.02562 * 12 11 10 15 15 C 1.41543 * 126.52747 * 179.97438 * 14 12 11 16 16 C 1.35343 * 105.50474 * 180.02562 * 15 14 12 17 17 N 1.35043 * 107.24150 * 359.97438 * 16 15 14 18 18 C 1.46498 * 124.88113 * 180.02562 * 17 16 15 19 19 C 1.54268 * 110.03269 * 32.88343 * 18 17 16 20 20 C 1.54964 * 104.16095 * 217.14028 * 19 18 17 21 21 C 1.54886 * 102.77595 * 37.88409 * 20 19 18 22 22 C 1.53876 * 110.03083 * 275.66667 * 18 17 16 23 23 N 1.28474 * 110.23957 * 359.97438 * 17 16 15 24 24 H 0.96995 * 119.99762 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47509 * 59.99982 * 9 7 2 26 26 H 1.09008 * 109.47079 * 300.00067 * 9 7 2 27 27 H 1.09010 * 109.46701 * 59.99793 * 10 9 7 28 28 H 1.08999 * 109.47145 * 300.00324 * 10 9 7 29 29 H 1.08000 * 127.24680 * 0.02562 * 15 14 12 30 30 H 1.07996 * 126.37984 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.01995 * 154.27472 * 18 17 16 32 32 H 1.08997 * 110.48619 * 335.78454 * 19 18 17 33 33 H 1.08996 * 110.48593 * 98.42860 * 19 18 17 34 34 H 1.09007 * 110.71414 * 279.57422 * 20 19 18 35 35 H 1.09001 * 110.76600 * 156.22319 * 20 19 18 36 36 H 1.09005 * 110.48693 * 203.40341 * 21 20 19 37 37 H 1.09006 * 110.59806 * 80.82612 * 21 20 19 38 38 H 1.09003 * 110.03227 * 238.56483 * 22 18 17 39 39 H 1.08998 * 110.02959 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 8 1.5194 -4.9195 0.0024 12 6 2.2532 -6.0494 0.0041 13 8 3.4664 -5.9858 0.0055 14 6 1.5833 -7.3644 0.0043 15 6 2.2143 -8.6314 0.0054 16 6 1.2082 -9.5367 0.0045 17 7 0.0479 -8.8457 0.0035 18 6 -1.2868 -9.4495 0.0028 19 6 -1.2672 -10.7759 0.7902 20 6 -2.2260 -11.7009 -0.0013 21 6 -1.9281 -11.3235 -1.4737 22 6 -1.7072 -9.7973 -1.4360 23 7 0.2829 -7.5826 0.0042 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8714 -3.6038 0.8923 28 1 2.8728 -3.6047 -0.8877 29 1 3.2752 -8.8333 0.0068 30 1 1.3135 -10.6115 0.0046 31 1 -2.0074 -8.7625 0.4466 32 1 -0.2610 -11.1946 0.8071 33 1 -1.6347 -10.6227 1.8048 34 1 -3.2646 -11.4855 0.2501 35 1 -1.9920 -12.7493 0.1838 36 1 -2.7778 -11.5704 -2.1102 37 1 -1.0294 -11.8306 -1.8252 38 1 -2.6323 -9.2798 -1.6901 39 1 -0.9183 -9.5164 -2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178224615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:26 Heat of formation + Delta-G solvation = -22.269219 kcal Electronic energy + Delta-G solvation = -20712.879249 eV Core-core repulsion = 17428.869330 eV Total energy + Delta-G solvation = -3284.009918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.81472 -39.55687 -38.40529 -35.93278 -33.28289 -32.63615 -30.95317 -30.17193 -29.29623 -28.24489 -25.28497 -23.67443 -22.53473 -21.16605 -20.83611 -20.16067 -19.87068 -17.99480 -17.15449 -16.53621 -16.09195 -15.91754 -15.67593 -15.19028 -14.99142 -14.46887 -14.07435 -13.59661 -13.23632 -13.13906 -12.79157 -12.44726 -12.30885 -12.06840 -11.71270 -11.68819 -11.33366 -11.17029 -11.11986 -10.96499 -10.87669 -10.69816 -10.65984 -10.30074 -9.57139 -9.55957 -9.30992 -9.21780 -9.13007 -8.38674 -6.04503 -4.08459 1.56013 2.03644 2.23962 3.27765 3.31557 3.39025 3.44966 3.47081 3.81212 3.97402 4.31451 4.43431 4.54854 4.58548 4.75832 4.83713 4.86940 4.99013 5.04890 5.24064 5.31936 5.35374 5.41838 5.52059 5.53095 5.61834 5.66340 5.69647 5.75955 6.16849 6.18738 6.32178 6.67611 6.73052 7.02840 7.63672 7.71489 7.83549 7.95580 8.28278 8.38365 8.97553 9.55430 11.07155 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.002950 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.458472 B = 9490.653565 C =10164.324706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.074 3.926 11 O -0.342 6.342 12 C 0.547 3.453 13 O -0.511 6.511 14 C 0.000 4.000 15 C -0.176 4.176 16 C -0.024 4.024 17 N -0.275 5.275 18 C 0.141 3.859 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.137 4.137 23 N -0.229 5.229 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -27.195 -0.590 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.256 6.256 12 C 0.389 3.611 13 O -0.398 6.398 14 C -0.158 4.158 15 C -0.203 4.203 16 C -0.165 4.165 17 N -0.064 5.064 18 C 0.041 3.959 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.175 4.175 23 N -0.065 5.065 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.181 0.819 30 H 0.198 0.802 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.688 -26.465 -0.589 27.076 hybrid contribution 1.302 0.604 -0.005 1.435 sum -4.386 -25.861 -0.594 26.237 Atomic orbital electron populations 1.69993 1.06090 1.26779 1.50013 1.24992 0.94910 0.99369 0.94971 0.86420 0.80074 0.83200 0.77641 1.19577 1.20869 1.20873 1.21031 0.93226 0.90104 1.51845 0.92163 1.19170 0.94202 0.88932 0.98965 1.23693 0.96434 0.78661 1.01026 1.86672 1.41516 1.15261 1.82184 1.19600 0.84814 0.83750 0.72944 1.90811 1.14349 1.87837 1.46843 1.21010 0.89702 0.92886 1.12192 1.21742 1.00605 0.89781 1.08210 1.22682 0.84996 0.99750 1.09099 1.45874 1.07258 1.03098 1.50206 1.22383 0.79870 0.95539 0.98130 1.22857 1.01833 0.93155 0.99588 1.22497 0.99528 0.99387 0.94544 1.22386 1.02193 0.94698 0.96952 1.22604 1.03100 0.97090 0.94736 1.73808 1.18064 0.98126 1.16534 0.92826 0.95299 0.95302 0.92180 0.92179 0.81853 0.80212 0.86714 0.89841 0.89845 0.90640 0.90549 0.90793 0.91170 0.89675 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.02 0.67 5.35 -27.89 -0.15 0.52 16 10 C 0.07 1.78 5.41 37.16 0.20 1.98 16 11 O -0.34 -7.80 10.23 -40.57 -0.42 -8.21 16 12 C 0.55 11.28 7.97 34.54 0.28 11.56 16 13 O -0.51 -11.15 16.72 -19.26 -0.32 -11.47 16 14 C 0.00 0.00 7.17 -82.79 -0.59 -0.59 16 15 C -0.18 -2.33 10.81 -39.35 -0.43 -2.76 16 16 C -0.02 -0.24 10.38 -17.17 -0.18 -0.42 16 17 N -0.27 -3.24 3.13 -53.75 -0.17 -3.41 16 18 C 0.14 1.15 3.87 -66.81 -0.26 0.89 16 19 C -0.14 -0.71 6.36 -25.03 -0.16 -0.87 16 20 C -0.12 -0.47 6.91 -24.70 -0.17 -0.64 16 21 C -0.12 -0.58 6.83 -25.08 -0.17 -0.75 16 22 C -0.14 -0.95 6.60 -25.61 -0.17 -1.12 16 23 N -0.23 -3.75 11.99 33.41 0.40 -3.35 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 28 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.18 1.07 6.84 -52.49 -0.36 0.71 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.40 5.86 -51.93 -0.30 0.09 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.27 8.14 -51.92 -0.42 -0.16 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -34.39 332.71 -7.67 -42.06 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -5.69 Total: -5.06 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.21 Total: -6.10 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.97 Total: -33.11 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.74 Total: -19.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.39 -7.67 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178224615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.792 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds