Wall clock time and date at job start Tue Mar 31 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48501 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47198 * 299.99936 * 3 2 1 6 6 H 1.48503 * 109.47060 * 59.99980 * 3 2 1 7 7 C 1.37881 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50690 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47408 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47469 * 179.97438 * 10 9 7 12 12 C 1.34728 * 117.00015 * 180.02562 * 11 10 9 13 13 O 1.21489 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.47584 * 120.00092 * 180.02562 * 12 11 10 15 15 C 1.41543 * 126.52747 * 179.97438 * 14 12 11 16 16 C 1.35343 * 105.50474 * 180.02562 * 15 14 12 17 17 N 1.35043 * 107.24150 * 359.97438 * 16 15 14 18 18 C 1.46498 * 124.88113 * 180.02562 * 17 16 15 19 19 C 1.54268 * 110.03269 * 32.88343 * 18 17 16 20 20 C 1.54964 * 104.16095 * 217.14028 * 19 18 17 21 21 C 1.54886 * 102.77595 * 37.88409 * 20 19 18 22 22 C 1.53876 * 110.03083 * 275.66667 * 18 17 16 23 23 N 1.28474 * 110.23957 * 359.97438 * 17 16 15 24 24 H 0.96995 * 119.99762 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47509 * 59.99982 * 9 7 2 26 26 H 1.09008 * 109.47079 * 300.00067 * 9 7 2 27 27 H 1.09010 * 109.46701 * 59.99793 * 10 9 7 28 28 H 1.08999 * 109.47145 * 300.00324 * 10 9 7 29 29 H 1.08000 * 127.24680 * 0.02562 * 15 14 12 30 30 H 1.07996 * 126.37984 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.01995 * 154.27472 * 18 17 16 32 32 H 1.08997 * 110.48619 * 335.78454 * 19 18 17 33 33 H 1.08996 * 110.48593 * 98.42860 * 19 18 17 34 34 H 1.09007 * 110.71414 * 279.57422 * 20 19 18 35 35 H 1.09001 * 110.76600 * 156.22319 * 20 19 18 36 36 H 1.09005 * 110.48693 * 203.40341 * 21 20 19 37 37 H 1.09006 * 110.59806 * 80.82612 * 21 20 19 38 38 H 1.09003 * 110.03227 * 238.56483 * 22 18 17 39 39 H 1.08998 * 110.02959 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 8 1.5194 -4.9195 0.0024 12 6 2.2532 -6.0494 0.0041 13 8 3.4664 -5.9858 0.0055 14 6 1.5833 -7.3644 0.0043 15 6 2.2143 -8.6314 0.0054 16 6 1.2082 -9.5367 0.0045 17 7 0.0479 -8.8457 0.0035 18 6 -1.2868 -9.4495 0.0028 19 6 -1.2672 -10.7759 0.7902 20 6 -2.2260 -11.7009 -0.0013 21 6 -1.9281 -11.3235 -1.4737 22 6 -1.7072 -9.7973 -1.4360 23 7 0.2829 -7.5826 0.0042 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5566 0.8903 27 1 2.8714 -3.6038 0.8923 28 1 2.8728 -3.6047 -0.8877 29 1 3.2752 -8.8333 0.0068 30 1 1.3135 -10.6115 0.0046 31 1 -2.0074 -8.7625 0.4466 32 1 -0.2610 -11.1946 0.8071 33 1 -1.6347 -10.6227 1.8048 34 1 -3.2646 -11.4855 0.2501 35 1 -1.9920 -12.7493 0.1838 36 1 -2.7778 -11.5704 -2.1102 37 1 -1.0294 -11.8306 -1.8252 38 1 -2.6323 -9.2798 -1.6901 39 1 -0.9183 -9.5164 -2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178224615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:26 Heat of formation + Delta-G solvation = -42.828859 kcal Electronic energy + Delta-G solvation = -20713.770781 eV Core-core repulsion = 17428.869330 eV Total energy + Delta-G solvation = -3284.901451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.84364 -41.23134 -38.98640 -37.70348 -35.47336 -33.56940 -32.39667 -31.84147 -29.75609 -29.09534 -27.20663 -25.15224 -23.38784 -22.91595 -21.71328 -21.34070 -20.75632 -19.11644 -18.63934 -18.04268 -17.71766 -17.46736 -16.87065 -16.49434 -16.14811 -15.59372 -15.00954 -14.83148 -14.51263 -14.38521 -14.34628 -13.91548 -13.20991 -13.16508 -13.01458 -12.72263 -12.62090 -12.60760 -12.12796 -12.04720 -12.04685 -12.00798 -11.77503 -11.61588 -11.52746 -11.47642 -11.40959 -10.63945 -10.36844 -10.14970 -8.28294 -6.42310 0.20543 1.08323 1.26298 1.40620 1.41626 1.55645 1.83382 2.03680 2.39598 3.05733 3.16745 3.48741 3.55270 3.79731 3.82839 4.04753 4.18509 4.20968 4.30437 4.37883 4.42106 4.45916 4.59735 4.63928 4.65623 4.71672 4.84735 5.01655 5.03354 5.16263 5.21841 5.24038 5.28203 5.42076 5.43080 5.44559 5.70465 5.84140 6.03724 6.53665 6.71340 6.90461 7.27512 8.85049 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.002950 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.458472 B = 9490.653565 C =10164.324706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.032 3.968 10 C 0.089 3.911 11 O -0.358 6.358 12 C 0.544 3.456 13 O -0.529 6.529 14 C -0.038 4.038 15 C -0.185 4.185 16 C 0.005 3.995 17 N -0.263 5.263 18 C 0.128 3.872 19 C -0.130 4.130 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.136 4.136 23 N -0.267 5.267 24 H 0.268 0.732 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.178 0.822 30 H 0.233 0.767 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -29.418 -0.472 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.086 0.914 9 C -0.005 4.005 10 C 0.016 3.984 11 O -0.273 6.273 12 C 0.389 3.611 13 O -0.418 6.418 14 C -0.194 4.194 15 C -0.212 4.212 16 C -0.137 4.137 17 N -0.053 5.053 18 C 0.028 3.972 19 C -0.168 4.168 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.174 4.174 23 N -0.106 5.106 24 H 0.077 0.923 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.196 0.804 30 H 0.250 0.750 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.304 -28.707 -0.471 29.197 hybrid contribution 1.051 1.148 -0.055 1.558 sum -4.253 -27.559 -0.526 27.890 Atomic orbital electron populations 1.70121 1.07965 1.28282 1.50411 1.26038 0.95884 1.03628 0.93967 0.85202 0.78877 0.77684 0.78068 1.18459 1.19935 1.19941 1.21394 0.93781 0.90979 1.52511 0.91413 1.18977 0.94314 0.90738 0.96482 1.23280 0.95183 0.78601 1.01359 1.86658 1.42093 1.15670 1.82890 1.20171 0.84854 0.84097 0.72015 1.90773 1.14978 1.88102 1.47940 1.20847 0.90769 0.92223 1.15517 1.22033 1.02091 0.88426 1.08661 1.23392 0.83190 1.01507 1.05568 1.46312 1.09135 1.01982 1.47837 1.22840 0.78076 0.96670 0.99574 1.22901 1.03072 0.91340 0.99466 1.22495 0.99368 0.99965 0.93352 1.22381 1.02968 0.92415 0.97867 1.22596 1.02258 0.99244 0.93317 1.73723 1.17918 1.00863 1.18058 0.92292 0.97802 0.97795 0.91750 0.91760 0.80448 0.75027 0.87703 0.88537 0.89425 0.90320 0.88684 0.90000 0.90362 0.89844 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.98 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -32.59 9.11 25.60 0.23 -32.35 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.03 1.86 5.35 29.84 0.16 2.02 16 10 C 0.09 4.42 5.41 71.98 0.39 4.81 16 11 O -0.36 -17.19 10.23 -56.38 -0.58 -17.76 16 12 C 0.54 23.36 7.97 70.29 0.56 23.92 16 13 O -0.53 -23.73 16.72 19.87 0.33 -23.40 16 14 C -0.04 -1.35 7.17 42.42 0.30 -1.05 16 15 C -0.18 -4.67 10.81 22.42 0.24 -4.42 16 16 C 0.01 0.10 10.38 83.53 0.87 0.96 16 17 N -0.26 -5.88 3.13 -323.96 -1.02 -6.90 16 18 C 0.13 1.89 3.87 45.72 0.18 2.06 16 19 C -0.13 -0.94 6.36 31.70 0.20 -0.74 16 20 C -0.11 -0.47 6.91 31.91 0.22 -0.25 16 21 C -0.12 -0.75 6.83 31.67 0.22 -0.53 16 22 C -0.14 -1.71 6.60 31.32 0.21 -1.50 16 23 N -0.27 -8.92 11.99 -48.22 -0.58 -9.50 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.00 0.22 8.14 -2.38 -0.02 0.21 16 27 H 0.06 3.11 8.14 -2.38 -0.02 3.09 16 28 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.23 1.49 6.84 -2.91 -0.02 1.47 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.10 0.46 5.86 -2.39 -0.01 0.45 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.97 7.92 -2.39 -0.02 0.95 16 Total: -1.00 -77.49 332.71 5.75 -71.74 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 1.04 Total: 2.60 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.24 Total: -6.40 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.31 Total: -73.80 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.24 Total: -41.16 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.49 5.75 -71.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178224615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.912 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds