Wall clock time and date at job start Tue Mar 31 2020 00:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50696 * 109.47512 * 341.03346 * 3 2 1 5 5 O 1.21287 * 120.00188 * 235.01312 * 4 3 2 6 6 N 1.34778 * 119.99969 * 55.00882 * 4 3 2 7 7 C 1.47066 * 136.05783 * 184.65804 * 6 4 3 8 8 C 1.53756 * 87.88839 * 152.96405 * 7 6 4 9 9 O 1.42906 * 114.39237 * 272.67433 * 8 7 6 10 10 C 1.50695 * 114.08892 * 139.77831 * 8 7 6 11 11 H 1.07997 * 120.00450 * 266.56000 * 10 8 7 12 12 C 1.37881 * 120.00052 * 86.56373 * 10 8 7 13 13 N 1.31510 * 119.99801 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00260 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46838 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47396 * 119.99553 * 14 12 10 17 17 H 1.48502 * 109.46969 * 239.99983 * 14 12 10 18 18 C 1.47066 * 136.05737 * 5.02876 * 6 4 3 19 19 C 1.53008 * 109.47005 * 221.03337 * 3 2 1 20 20 C 1.52996 * 109.46884 * 300.00278 * 19 3 2 21 21 C 1.53001 * 109.46955 * 299.99703 * 20 19 3 22 22 C 1.52992 * 109.47297 * 60.00520 * 21 20 19 23 23 C 1.53001 * 109.47279 * 101.03361 * 3 2 1 24 24 H 1.08998 * 113.46635 * 267.68970 * 7 6 4 25 25 H 1.09000 * 113.46859 * 38.13243 * 7 6 4 26 26 H 0.96697 * 114.00175 * 273.58580 * 9 8 7 27 27 H 0.97009 * 120.00147 * 180.02562 * 13 12 10 28 28 H 1.09004 * 113.46622 * 321.86126 * 18 6 4 29 29 H 1.08998 * 113.47064 * 92.30148 * 18 6 4 30 30 H 1.09000 * 109.47170 * 179.97438 * 19 3 2 31 31 H 1.08998 * 109.46470 * 60.00199 * 19 3 2 32 32 H 1.09001 * 109.46918 * 179.97438 * 20 19 3 33 33 H 1.09000 * 109.47590 * 59.99800 * 20 19 3 34 34 H 1.09001 * 109.46785 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.47395 * 299.99811 * 21 20 19 36 36 H 1.08996 * 109.47390 * 59.99511 * 22 21 20 37 37 H 1.09003 * 109.47234 * 180.02562 * 22 21 20 38 38 H 1.09006 * 109.47395 * 179.97438 * 23 3 2 39 39 H 1.08990 * 109.47153 * 300.00269 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1110 -1.3427 0.4618 5 8 3.8810 -1.4135 1.3962 6 7 2.7051 -2.4656 -0.1635 7 6 2.8911 -3.9115 0.0298 8 6 1.5411 -4.1219 -0.6753 9 8 0.4071 -4.0678 0.1927 10 6 1.5168 -5.2959 -1.6198 11 1 1.7322 -5.1503 -2.6680 12 6 1.2194 -6.5560 -1.1457 13 7 0.9575 -6.7335 0.1308 14 14 1.1900 -8.0115 -2.3163 15 1 1.5175 -7.5493 -3.6890 16 1 2.1912 -9.0178 -1.8803 17 1 -0.1627 -8.6242 -2.3103 18 6 1.8867 -2.7838 -1.3433 19 6 3.1175 1.0891 0.9471 20 6 2.6068 2.4529 0.4782 21 6 3.1167 2.7292 -0.9376 22 6 2.6073 1.6410 -1.8846 23 6 3.1179 0.2770 -1.4158 24 1 3.7376 -4.3181 -0.5235 25 1 2.8872 -4.2135 1.0772 26 1 0.1921 -4.9123 0.6119 27 1 0.7487 -7.6201 0.4644 28 1 1.0270 -2.1250 -1.4657 29 1 2.4685 -2.8931 -2.2585 30 1 4.2075 1.0893 0.9474 31 1 2.7542 0.8921 1.9557 32 1 2.9694 3.2283 1.1531 33 1 1.5168 2.4524 0.4782 34 1 2.7532 3.7011 -1.2714 35 1 4.2068 2.7298 -0.9376 36 1 1.5173 1.6404 -1.8846 37 1 2.9709 1.8376 -2.8932 38 1 4.2080 0.2779 -1.4158 39 1 2.7549 -0.4983 -2.0904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186829903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:17 Heat of formation + Delta-G solvation = -33.928680 kcal Electronic energy + Delta-G solvation = -22495.392521 eV Core-core repulsion = 19210.877010 eV Total energy + Delta-G solvation = -3284.515511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.04 seconds Orbital eigenvalues (eV) -40.57884 -38.73374 -37.12453 -35.64582 -34.09725 -32.21789 -31.70152 -30.99777 -28.62960 -25.63083 -25.21722 -23.77765 -22.72349 -21.11479 -20.40214 -18.74351 -17.63663 -16.93081 -16.38250 -15.73707 -15.17027 -14.81100 -14.73943 -14.45356 -14.20215 -13.69609 -13.30928 -13.20975 -13.11719 -12.81966 -12.58989 -12.32144 -12.14744 -12.11692 -11.95420 -11.68863 -11.58326 -11.26811 -11.11957 -10.97640 -10.73615 -10.65656 -10.49099 -10.33717 -10.25713 -9.77890 -9.16413 -8.80282 -8.45681 -7.95984 -6.42451 -4.53543 2.65551 2.91899 3.03571 3.12330 3.21693 3.24654 3.46264 3.97975 4.15514 4.48548 4.56002 4.62308 4.80446 4.91535 5.01263 5.06103 5.25279 5.32751 5.42743 5.50356 5.61438 5.75945 5.85260 5.88516 5.91199 5.98870 6.02523 6.11932 6.16477 6.20175 6.24322 6.32769 6.61021 6.73947 7.05639 7.60295 7.69480 7.75569 8.31423 8.49499 8.54487 9.17953 9.46209 10.64457 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032418 B = 0.004728 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.521602 B = 5920.442585 C = 6022.561023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.217 3.783 3 C 0.030 3.970 4 C 0.547 3.453 5 O -0.545 6.545 6 N -0.627 5.627 7 C 0.080 3.920 8 C 0.242 3.758 9 O -0.570 6.570 10 C -0.535 4.535 11 H 0.074 0.926 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.910 3.090 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.096 3.904 19 C -0.092 4.092 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.107 4.107 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.395 0.605 27 H 0.274 0.726 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.569 13.399 -3.671 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.102 4.102 3 C 0.023 3.977 4 C 0.333 3.667 5 O -0.423 6.423 6 N -0.359 5.359 7 C -0.042 4.042 8 C 0.200 3.800 9 O -0.383 6.383 10 C -0.573 4.573 11 H 0.092 0.908 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.737 3.263 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.027 4.027 19 C -0.131 4.131 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.145 4.145 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.252 0.748 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.253 14.001 -3.102 14.958 hybrid contribution 0.403 -1.487 -0.317 1.573 sum 4.656 12.514 -3.418 13.783 Atomic orbital electron populations 1.81194 1.12116 1.07669 1.07438 1.28306 0.94143 0.93731 0.94037 1.18506 0.83200 0.95947 1.00030 1.19286 0.81002 0.83300 0.83096 1.90677 1.36082 1.86083 1.29453 1.49752 1.49991 1.06682 1.29519 1.24303 1.02430 0.75459 1.02053 1.19558 0.82754 0.90330 0.87380 1.86047 1.47674 1.40742 1.63869 1.21434 1.49023 0.91465 0.95421 0.90811 1.25092 0.93145 0.99398 0.95417 1.69277 1.46896 1.24247 1.13169 0.86250 0.77977 0.81373 0.80750 1.19377 1.20601 1.20612 1.23508 0.92798 0.97550 0.88805 1.21443 1.02405 0.91406 0.97834 1.21633 1.00970 0.96671 0.96916 1.21567 1.01133 0.98339 0.94713 1.21591 1.01108 0.93824 0.99388 1.21654 1.02163 0.98712 0.92007 0.89900 0.91578 0.74832 0.91535 0.91781 0.89050 0.88995 0.90424 0.90906 0.92062 0.91725 0.91310 0.91856 0.90817 0.89283 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.86 18.54 42.15 0.78 -7.08 16 2 C 0.22 3.71 9.66 -20.76 -0.20 3.51 16 3 C 0.03 0.45 0.51 -158.45 -0.08 0.37 16 4 C 0.55 10.47 6.70 -10.99 -0.07 10.39 16 5 O -0.54 -11.70 16.76 5.55 0.09 -11.61 16 6 N -0.63 -12.80 3.57 -185.05 -0.66 -13.46 16 7 C 0.08 1.79 8.05 -8.38 -0.07 1.72 16 8 C 0.24 5.77 1.59 -91.13 -0.14 5.62 16 9 O -0.57 -15.03 13.55 -35.23 -0.48 -15.51 16 10 C -0.54 -13.21 8.69 -34.44 -0.30 -13.51 16 11 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 13 N -0.90 -23.01 11.01 55.43 0.61 -22.39 16 14 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.10 1.92 6.02 -8.51 -0.05 1.87 16 19 C -0.09 -1.15 4.01 -26.73 -0.11 -1.26 16 20 C -0.12 -1.24 5.70 -26.73 -0.15 -1.39 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -1.18 5.70 -26.73 -0.15 -1.33 16 23 C -0.11 -1.25 4.62 -26.73 -0.12 -1.37 16 24 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 25 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 26 H 0.39 10.62 6.33 45.56 0.29 10.91 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.06 1.29 6.97 -51.93 -0.36 0.93 16 29 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 30 H 0.09 1.06 8.04 -51.93 -0.42 0.65 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.69 7.23 -51.93 -0.38 0.31 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.70 7.23 -51.93 -0.38 0.33 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.98 6.65 -51.93 -0.35 0.63 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -28.97 318.62 -6.51 -35.48 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.93 Total: 10.36 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.71 Total: 5.14 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.73 Total: -42.94 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.38 Total: -27.12 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.97 -6.51 -35.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186829903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.549 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds