Wall clock time and date at job start Tue Mar 31 2020 00:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50696 * 109.47512 * 341.03346 * 3 2 1 5 5 O 1.21287 * 120.00188 * 235.01312 * 4 3 2 6 6 N 1.34778 * 119.99969 * 55.00882 * 4 3 2 7 7 C 1.47066 * 136.05783 * 184.65804 * 6 4 3 8 8 C 1.53756 * 87.88839 * 152.96405 * 7 6 4 9 9 O 1.42906 * 114.39237 * 272.67433 * 8 7 6 10 10 C 1.50695 * 114.08892 * 139.77831 * 8 7 6 11 11 H 1.07997 * 120.00450 * 266.56000 * 10 8 7 12 12 C 1.37881 * 120.00052 * 86.56373 * 10 8 7 13 13 N 1.31510 * 119.99801 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00260 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.46838 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47396 * 119.99553 * 14 12 10 17 17 H 1.48502 * 109.46969 * 239.99983 * 14 12 10 18 18 C 1.47066 * 136.05737 * 5.02876 * 6 4 3 19 19 C 1.53008 * 109.47005 * 221.03337 * 3 2 1 20 20 C 1.52996 * 109.46884 * 300.00278 * 19 3 2 21 21 C 1.53001 * 109.46955 * 299.99703 * 20 19 3 22 22 C 1.52992 * 109.47297 * 60.00520 * 21 20 19 23 23 C 1.53001 * 109.47279 * 101.03361 * 3 2 1 24 24 H 1.08998 * 113.46635 * 267.68970 * 7 6 4 25 25 H 1.09000 * 113.46859 * 38.13243 * 7 6 4 26 26 H 0.96697 * 114.00175 * 273.58580 * 9 8 7 27 27 H 0.97009 * 120.00147 * 180.02562 * 13 12 10 28 28 H 1.09004 * 113.46622 * 321.86126 * 18 6 4 29 29 H 1.08998 * 113.47064 * 92.30148 * 18 6 4 30 30 H 1.09000 * 109.47170 * 179.97438 * 19 3 2 31 31 H 1.08998 * 109.46470 * 60.00199 * 19 3 2 32 32 H 1.09001 * 109.46918 * 179.97438 * 20 19 3 33 33 H 1.09000 * 109.47590 * 59.99800 * 20 19 3 34 34 H 1.09001 * 109.46785 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.47395 * 299.99811 * 21 20 19 36 36 H 1.08996 * 109.47390 * 59.99511 * 22 21 20 37 37 H 1.09003 * 109.47234 * 180.02562 * 22 21 20 38 38 H 1.09006 * 109.47395 * 179.97438 * 23 3 2 39 39 H 1.08990 * 109.47153 * 300.00269 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1110 -1.3427 0.4618 5 8 3.8810 -1.4135 1.3962 6 7 2.7051 -2.4656 -0.1635 7 6 2.8911 -3.9115 0.0298 8 6 1.5411 -4.1219 -0.6753 9 8 0.4071 -4.0678 0.1927 10 6 1.5168 -5.2959 -1.6198 11 1 1.7322 -5.1503 -2.6680 12 6 1.2194 -6.5560 -1.1457 13 7 0.9575 -6.7335 0.1308 14 14 1.1900 -8.0115 -2.3163 15 1 1.5175 -7.5493 -3.6890 16 1 2.1912 -9.0178 -1.8803 17 1 -0.1627 -8.6242 -2.3103 18 6 1.8867 -2.7838 -1.3433 19 6 3.1175 1.0891 0.9471 20 6 2.6068 2.4529 0.4782 21 6 3.1167 2.7292 -0.9376 22 6 2.6073 1.6410 -1.8846 23 6 3.1179 0.2770 -1.4158 24 1 3.7376 -4.3181 -0.5235 25 1 2.8872 -4.2135 1.0772 26 1 0.1921 -4.9123 0.6119 27 1 0.7487 -7.6201 0.4644 28 1 1.0270 -2.1250 -1.4657 29 1 2.4685 -2.8931 -2.2585 30 1 4.2075 1.0893 0.9474 31 1 2.7542 0.8921 1.9557 32 1 2.9694 3.2283 1.1531 33 1 1.5168 2.4524 0.4782 34 1 2.7532 3.7011 -1.2714 35 1 4.2068 2.7298 -0.9376 36 1 1.5173 1.6404 -1.8846 37 1 2.9709 1.8376 -2.8932 38 1 4.2080 0.2779 -1.4158 39 1 2.7549 -0.4983 -2.0904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186829903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:16 Heat of formation + Delta-G solvation = -53.588658 kcal Electronic energy + Delta-G solvation = -22496.245042 eV Core-core repulsion = 19210.877010 eV Total energy + Delta-G solvation = -3285.368031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99265 -40.21000 -38.64145 -36.95316 -35.98009 -34.16238 -32.82301 -31.88130 -30.28437 -27.36314 -26.92886 -24.92124 -23.61475 -22.44062 -21.76982 -20.28744 -19.44218 -18.41890 -17.61118 -17.31376 -17.00105 -16.26931 -16.03336 -15.78371 -15.52183 -15.10271 -14.69367 -14.57045 -14.50855 -14.16391 -14.05700 -13.74945 -13.56068 -13.45807 -13.20178 -13.11334 -12.82453 -12.78453 -12.70599 -12.24906 -12.20659 -12.14128 -11.69630 -11.46693 -11.43507 -11.11999 -10.85229 -10.60446 -10.31252 -9.68480 -8.29893 -6.47964 1.17984 1.45144 1.49067 1.54331 1.57927 1.60206 1.94424 2.38590 2.69080 2.92875 3.19244 3.53241 3.59026 3.70366 4.03519 4.10495 4.16537 4.18307 4.39024 4.43855 4.49618 4.50361 4.61783 4.63806 4.81171 4.85400 4.88626 4.99671 5.06533 5.14706 5.18068 5.18943 5.31760 5.33150 5.50238 5.70425 5.85419 6.32419 6.59696 6.72853 6.93527 7.26266 7.41066 8.76808 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032418 B = 0.004728 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.521602 B = 5920.442585 C = 6022.561023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.232 3.768 3 C 0.036 3.964 4 C 0.542 3.458 5 O -0.571 6.571 6 N -0.630 5.630 7 C 0.083 3.917 8 C 0.215 3.785 9 O -0.588 6.588 10 C -0.548 4.548 11 H 0.085 0.915 12 C 0.027 3.973 13 N -0.923 5.923 14 Si 0.974 3.026 15 H -0.259 1.259 16 H -0.279 1.279 17 H -0.284 1.284 18 C 0.114 3.886 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.106 4.106 24 H 0.097 0.903 25 H 0.037 0.963 26 H 0.388 0.612 27 H 0.275 0.725 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 14.846 -5.653 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.086 4.086 3 C 0.029 3.971 4 C 0.330 3.670 5 O -0.451 6.451 6 N -0.363 5.363 7 C -0.040 4.040 8 C 0.173 3.827 9 O -0.401 6.401 10 C -0.586 4.586 11 H 0.103 0.897 12 C -0.173 4.173 13 N -0.565 5.565 14 Si 0.799 3.201 15 H -0.182 1.182 16 H -0.205 1.205 17 H -0.210 1.210 18 C -0.008 4.008 19 C -0.130 4.130 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.144 4.144 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.243 0.757 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.684 15.481 -5.099 17.262 hybrid contribution -0.030 -1.938 0.375 1.974 sum 5.653 13.544 -4.724 15.418 Atomic orbital electron populations 1.81197 1.13456 1.08903 1.09036 1.28757 0.94607 0.92541 0.92700 1.18740 0.81597 0.93865 1.02903 1.20047 0.80410 0.84251 0.82294 1.90659 1.37365 1.86679 1.30350 1.49774 1.50276 1.06257 1.29950 1.24120 1.02360 0.77255 1.00258 1.19945 0.82434 0.92527 0.87744 1.86035 1.49117 1.40420 1.64510 1.21740 1.48954 0.91914 0.96000 0.89734 1.25878 0.92835 1.01926 0.96700 1.69366 1.47648 1.24738 1.14712 0.85250 0.77495 0.78114 0.79239 1.18218 1.20509 1.21026 1.23450 0.92956 0.95021 0.89412 1.21533 1.03185 0.91983 0.96313 1.21637 0.99889 0.95476 0.98739 1.21592 1.02280 0.98574 0.92943 1.21607 1.00010 0.92836 1.01105 1.21785 1.03418 0.99975 0.89268 0.88546 0.94458 0.75676 0.91500 0.92162 0.85800 0.87561 0.92251 0.88707 0.93795 0.90029 0.89380 0.93665 0.88253 0.87125 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.50 18.54 20.01 0.37 -17.13 16 2 C 0.23 7.90 9.66 89.44 0.86 8.76 16 3 C 0.04 1.02 0.51 -54.73 -0.03 0.99 16 4 C 0.54 20.48 6.70 87.66 0.59 21.06 16 5 O -0.57 -24.48 16.76 -3.05 -0.05 -24.53 16 6 N -0.63 -25.56 3.57 -858.25 -3.06 -28.62 16 7 C 0.08 3.77 8.05 83.26 0.67 4.44 16 8 C 0.21 10.32 1.59 -11.12 -0.02 10.30 16 9 O -0.59 -31.98 13.55 -148.98 -2.02 -34.00 16 10 C -0.55 -26.81 8.69 25.60 0.22 -26.58 16 11 H 0.08 3.85 7.81 -2.91 -0.02 3.83 16 12 C 0.03 1.31 5.40 84.66 0.46 1.77 16 13 N -0.92 -48.32 11.01 21.45 0.24 -48.08 16 14 Si 0.97 39.20 29.54 68.60 2.03 41.23 16 15 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 16 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 18 C 0.11 4.45 6.02 83.18 0.50 4.95 16 19 C -0.09 -2.13 4.01 30.60 0.12 -2.01 16 20 C -0.12 -2.09 5.70 30.59 0.17 -1.91 16 21 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 22 C -0.12 -1.90 5.70 30.59 0.17 -1.73 16 23 C -0.11 -2.19 4.62 30.60 0.14 -2.05 16 24 H 0.10 4.05 8.10 -2.39 -0.02 4.03 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.39 21.74 6.33 -74.06 -0.47 21.27 16 27 H 0.28 13.63 8.31 -92.70 -0.77 12.86 16 28 H 0.06 2.40 6.97 -2.38 -0.02 2.38 16 29 H 0.12 4.01 8.10 -2.39 -0.02 3.99 16 30 H 0.11 2.19 8.04 -2.39 -0.02 2.18 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 0.92 7.23 -2.39 -0.02 0.91 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.04 0.91 7.23 -2.39 -0.02 0.89 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.63 6.65 -2.39 -0.02 1.61 16 Total: -1.00 -63.76 318.62 2.15 -61.61 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.60 Total: 32.88 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 4.05 Total: 16.64 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -2.45 Total: -93.83 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -2.07 Total: -58.53 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -63.76 2.15 -61.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186829903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds