Wall clock time and date at job start Mon Mar 30 2020 23:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99872 * 2 1 4 4 C 1.50693 * 109.47207 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99571 * 270.01833 * 4 3 2 6 6 C 1.38213 * 119.99866 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.99844 * 359.81233 * 6 5 4 8 8 C 1.38212 * 120.00162 * 0.42195 * 7 6 5 9 9 C 1.50703 * 119.99882 * 179.81027 * 8 7 6 10 10 C 1.50696 * 109.47225 * 269.72105 * 9 8 7 11 11 O 1.20833 * 119.99595 * 0.02562 * 10 9 8 12 12 O 1.34224 * 120.00302 * 180.02562 * 10 9 8 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46755 * 89.99832 * 19 17 15 21 21 H 1.48495 * 109.46931 * 209.99846 * 19 17 15 22 22 H 1.48500 * 109.46738 * 330.00088 * 19 17 15 23 23 C 1.38209 * 120.00698 * 89.99607 * 4 3 2 24 24 H 1.09004 * 109.47472 * 60.00425 * 1 2 3 25 25 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47131 * 299.99952 * 1 2 3 27 27 H 1.08999 * 109.47374 * 59.99607 * 3 2 1 28 28 H 1.09003 * 109.46991 * 300.00109 * 3 2 1 29 29 H 1.08001 * 120.00273 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.99954 * 180.02562 * 6 5 4 31 31 H 1.08006 * 119.99819 * 180.23022 * 7 6 5 32 32 H 1.09009 * 109.46568 * 149.72565 * 9 8 7 33 33 H 1.08995 * 109.47249 * 29.72676 * 9 8 7 34 34 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 35 35 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 36 36 H 1.09000 * 109.47486 * 299.99948 * 14 13 12 37 37 H 1.09001 * 109.47362 * 60.00671 * 14 13 12 38 38 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99552 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2019 1.1314 1.1965 6 6 5.5797 1.0218 1.1960 7 6 6.2681 0.9634 -0.0016 8 6 5.5792 1.0234 -1.1983 9 6 6.3299 0.9641 -2.5037 10 6 6.6918 2.3606 -2.9390 11 8 6.3733 3.3071 -2.2587 12 8 7.3681 2.5533 -4.0823 13 6 7.6831 3.9252 -4.4388 14 6 8.4505 3.9448 -5.7623 15 6 8.7780 5.3686 -6.1320 16 1 8.4701 6.1784 -5.4872 17 6 9.4709 5.6374 -7.2933 18 7 9.8463 4.6512 -8.0782 19 14 9.8762 7.4023 -7.7519 20 1 11.1929 7.7738 -7.1742 21 1 9.9307 7.5295 -9.2304 22 1 8.8274 8.3064 -7.2155 23 6 4.2010 1.1322 -1.1978 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.6639 1.1732 2.1320 30 1 6.1183 0.9783 2.1311 31 1 7.3444 0.8740 -0.0020 32 1 5.7019 0.4981 -3.2631 33 1 7.2389 0.3769 -2.3737 34 1 6.7595 4.4941 -4.5453 35 1 8.2970 4.3719 -3.6566 36 1 9.3741 3.3759 -5.6553 37 1 7.8370 3.4979 -6.5447 38 1 10.3340 4.8402 -8.8951 39 1 3.6623 1.1753 -2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188432052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:30 Heat of formation + Delta-G solvation = -123.188979 kcal Electronic energy + Delta-G solvation = -20268.757190 eV Core-core repulsion = 16948.078311 eV Total energy + Delta-G solvation = -3320.678879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26904 -39.34998 -37.82916 -36.08376 -33.40467 -33.22368 -31.86687 -30.33419 -28.21143 -27.45227 -25.56587 -24.96361 -22.52984 -21.73539 -20.84050 -20.06519 -17.37129 -16.87493 -16.62547 -16.44991 -16.15313 -15.96746 -15.80674 -15.48550 -14.98321 -14.50029 -14.32221 -13.48259 -13.27908 -12.95362 -12.83046 -12.61467 -12.38944 -12.35445 -12.07192 -11.73976 -11.24725 -11.21130 -11.07654 -11.04125 -10.74653 -10.68463 -10.20957 -10.01901 -9.63688 -9.63138 -9.30574 -8.96124 -8.82941 -8.44707 -6.10723 -4.15083 1.11894 1.25856 2.60365 3.13253 3.28236 3.34198 3.38005 3.49251 3.95572 4.39476 4.46590 4.59194 4.70239 4.93132 4.94561 4.99636 5.07122 5.10139 5.20234 5.25797 5.28131 5.33500 5.38488 5.45783 5.51490 5.85954 5.92128 6.09891 6.11584 6.30784 6.39572 6.45470 6.64268 6.79100 6.85752 7.02682 7.56162 7.62305 7.86802 8.20015 8.28383 8.90503 9.49307 11.00798 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.002671 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.084052 B =10478.595572 C =10823.998417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.103 3.897 4 C -0.094 4.094 5 C -0.098 4.098 6 C -0.122 4.122 7 C -0.095 4.095 8 C -0.072 4.072 9 C -0.077 4.077 10 C 0.455 3.545 11 O -0.511 6.511 12 O -0.358 6.358 13 C 0.076 3.924 14 C 0.024 3.976 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.080 4.080 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -10.902 17.404 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.027 3.973 4 C -0.094 4.094 5 C -0.116 4.116 6 C -0.140 4.140 7 C -0.113 4.113 8 C -0.072 4.072 9 C -0.115 4.115 10 C 0.297 3.703 11 O -0.400 6.400 12 O -0.275 6.275 13 C 0.003 3.997 14 C -0.013 4.013 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.098 4.098 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.349 -10.784 17.395 24.996 hybrid contribution 0.070 1.362 -0.300 1.397 sum -14.280 -9.421 17.096 24.185 Atomic orbital electron populations 1.22764 0.81019 1.02833 1.00049 1.87972 1.19575 1.27537 1.95420 1.21346 0.89910 0.84985 1.01045 1.19467 0.93824 1.02632 0.93516 1.21004 0.94353 0.98992 0.97266 1.21071 0.94167 1.00803 0.97978 1.21075 0.99926 0.98388 0.91905 1.19302 0.93462 1.00707 0.93760 1.20313 1.02596 0.92846 0.95736 1.23383 0.75453 0.91809 0.79626 1.90649 1.51109 1.44055 1.54187 1.86521 1.66799 1.35581 1.38574 1.23628 0.99685 0.76376 0.99986 1.19172 0.95364 0.97912 0.88842 1.20985 1.36761 0.91673 1.07034 0.92285 1.24985 0.95492 0.97604 0.96096 1.69972 1.38439 1.31247 1.13199 0.86470 0.78871 0.84357 0.77606 1.20470 1.21036 1.19734 1.20881 0.93448 0.97832 0.97687 0.93929 0.89544 0.94083 0.92383 0.92255 0.86091 0.85752 0.85806 0.86862 0.86801 0.92381 0.92374 0.95353 0.95346 0.92704 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.03 10.69 -35.23 -0.38 -4.41 16 3 C 0.10 1.00 6.06 36.00 0.22 1.22 16 4 C -0.09 -1.09 5.51 -104.63 -0.58 -1.66 16 5 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.09 -1.11 9.70 -39.58 -0.38 -1.49 16 8 C -0.07 -0.91 4.37 -104.63 -0.46 -1.37 16 9 C -0.08 -0.95 5.94 -29.04 -0.17 -1.12 16 10 C 0.45 7.90 7.95 36.00 0.29 8.19 16 11 O -0.51 -10.28 15.78 -18.76 -0.30 -10.58 16 12 O -0.36 -7.17 10.22 -39.24 -0.40 -7.57 16 13 C 0.08 1.71 5.40 37.16 0.20 1.91 16 14 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.08 -0.99 9.36 -39.59 -0.37 -1.36 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.11 1.16 8.09 -51.92 -0.42 0.74 16 33 H 0.11 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 35 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -33.17 343.42 -7.54 -40.71 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.87 Total: -3.47 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -1.49 Total: -10.60 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.07 Total: -22.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.17 -7.54 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188432052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.483 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds