Wall clock time and date at job start Mon Mar 30 2020 23:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99872 * 2 1 4 4 C 1.50693 * 109.47207 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99571 * 270.01833 * 4 3 2 6 6 C 1.38213 * 119.99866 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.99844 * 359.81233 * 6 5 4 8 8 C 1.38212 * 120.00162 * 0.42195 * 7 6 5 9 9 C 1.50703 * 119.99882 * 179.81027 * 8 7 6 10 10 C 1.50696 * 109.47225 * 269.72105 * 9 8 7 11 11 O 1.20833 * 119.99595 * 0.02562 * 10 9 8 12 12 O 1.34224 * 120.00302 * 180.02562 * 10 9 8 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46755 * 89.99832 * 19 17 15 21 21 H 1.48495 * 109.46931 * 209.99846 * 19 17 15 22 22 H 1.48500 * 109.46738 * 330.00088 * 19 17 15 23 23 C 1.38209 * 120.00698 * 89.99607 * 4 3 2 24 24 H 1.09004 * 109.47472 * 60.00425 * 1 2 3 25 25 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47131 * 299.99952 * 1 2 3 27 27 H 1.08999 * 109.47374 * 59.99607 * 3 2 1 28 28 H 1.09003 * 109.46991 * 300.00109 * 3 2 1 29 29 H 1.08001 * 120.00273 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.99954 * 180.02562 * 6 5 4 31 31 H 1.08006 * 119.99819 * 180.23022 * 7 6 5 32 32 H 1.09009 * 109.46568 * 149.72565 * 9 8 7 33 33 H 1.08995 * 109.47249 * 29.72676 * 9 8 7 34 34 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 35 35 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 36 36 H 1.09000 * 109.47486 * 299.99948 * 14 13 12 37 37 H 1.09001 * 109.47362 * 60.00671 * 14 13 12 38 38 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99552 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2019 1.1314 1.1965 6 6 5.5797 1.0218 1.1960 7 6 6.2681 0.9634 -0.0016 8 6 5.5792 1.0234 -1.1983 9 6 6.3299 0.9641 -2.5037 10 6 6.6918 2.3606 -2.9390 11 8 6.3733 3.3071 -2.2587 12 8 7.3681 2.5533 -4.0823 13 6 7.6831 3.9252 -4.4388 14 6 8.4505 3.9448 -5.7623 15 6 8.7780 5.3686 -6.1320 16 1 8.4701 6.1784 -5.4872 17 6 9.4709 5.6374 -7.2933 18 7 9.8463 4.6512 -8.0782 19 14 9.8762 7.4023 -7.7519 20 1 11.1929 7.7738 -7.1742 21 1 9.9307 7.5295 -9.2304 22 1 8.8274 8.3064 -7.2155 23 6 4.2010 1.1322 -1.1978 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.6639 1.1732 2.1320 30 1 6.1183 0.9783 2.1311 31 1 7.3444 0.8740 -0.0020 32 1 5.7019 0.4981 -3.2631 33 1 7.2389 0.3769 -2.3737 34 1 6.7595 4.4941 -4.5453 35 1 8.2970 4.3719 -3.6566 36 1 9.3741 3.3759 -5.6553 37 1 7.8370 3.4979 -6.5447 38 1 10.3340 4.8402 -8.8951 39 1 3.6623 1.1753 -2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188432052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:30 Heat of formation + Delta-G solvation = -141.892476 kcal Electronic energy + Delta-G solvation = -20269.568235 eV Core-core repulsion = 16948.078311 eV Total energy + Delta-G solvation = -3321.489923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58301 -40.35734 -38.57877 -37.64249 -35.45554 -34.23843 -32.70083 -32.30368 -29.26691 -28.13956 -26.93146 -26.24415 -23.70743 -22.98604 -22.43574 -21.21831 -19.00877 -18.14171 -17.74534 -17.70406 -17.34438 -17.06735 -16.93662 -16.47848 -16.38900 -15.87849 -15.13673 -15.02816 -14.44786 -14.39622 -14.10108 -13.61634 -13.44603 -13.41081 -13.14933 -12.99970 -12.89940 -12.59710 -12.57007 -12.36037 -12.06239 -11.88043 -11.85004 -11.53342 -11.47444 -11.34262 -10.67535 -10.62153 -9.80643 -9.71424 -8.27938 -6.41267 0.25432 0.39698 1.21003 1.40377 1.42274 1.53431 1.83201 2.39356 2.64883 3.06329 3.17465 3.54118 3.81102 3.90484 3.98254 4.14943 4.19696 4.24045 4.27194 4.31179 4.41574 4.47759 4.54359 4.57770 4.58887 4.69143 4.73138 4.86268 5.02520 5.09255 5.27380 5.45856 5.47848 5.55626 5.56878 5.59305 5.74522 6.02993 6.05787 6.18073 6.71146 6.77709 7.28528 8.84667 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.002671 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.084052 B =10478.595572 C =10823.998417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.104 3.896 4 C -0.108 4.108 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.109 4.109 8 C -0.091 4.091 9 C -0.067 4.067 10 C 0.455 3.545 11 O -0.540 6.540 12 O -0.366 6.366 13 C 0.091 3.909 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.973 3.027 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.099 4.099 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.268 0.732 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.020 -10.632 18.595 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.028 3.972 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.144 4.144 7 C -0.126 4.126 8 C -0.091 4.091 9 C -0.104 4.104 10 C 0.299 3.701 11 O -0.430 6.430 12 O -0.283 6.283 13 C 0.018 3.982 14 C -0.007 4.007 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.565 5.565 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.117 4.117 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.911 -10.531 18.603 26.064 hybrid contribution 0.171 1.195 -0.595 1.346 sum -14.740 -9.335 18.008 25.074 Atomic orbital electron populations 1.22954 0.79352 1.03906 1.01001 1.87927 1.21476 1.27955 1.95614 1.21373 0.88925 0.85011 1.01918 1.19789 0.95017 1.02396 0.93628 1.21347 0.94688 0.98108 0.97914 1.21425 0.94418 0.99844 0.98694 1.21361 1.00775 0.98404 0.92105 1.19420 0.93697 1.01910 0.94075 1.20443 1.04170 0.89473 0.96287 1.24402 0.73943 0.93634 0.78092 1.90632 1.52109 1.45527 1.54692 1.86518 1.67721 1.33724 1.40299 1.23123 0.99043 0.77991 0.98042 1.18985 0.94477 0.96935 0.90282 1.21374 1.37261 0.92593 1.07655 0.91826 1.25965 0.95036 1.02440 0.95855 1.70090 1.38981 1.33743 1.13728 0.85323 0.78980 0.78502 0.77501 1.19485 1.20301 1.18814 1.21077 0.93743 0.98502 0.98356 0.93341 0.88495 0.92747 0.90775 0.92098 0.83936 0.83284 0.84587 0.84693 0.84174 0.92471 0.92371 0.97427 0.97472 0.92293 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.10 10.69 -148.98 -1.59 -9.69 16 3 C 0.10 1.89 6.06 71.23 0.43 2.32 16 4 C -0.11 -2.39 5.51 -19.87 -0.11 -2.50 16 5 C -0.10 -2.01 9.70 22.27 0.22 -1.79 16 6 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 7 C -0.11 -2.38 9.70 22.27 0.22 -2.16 16 8 C -0.09 -2.20 4.37 -19.87 -0.09 -2.28 16 9 C -0.07 -1.55 5.94 29.10 0.17 -1.38 16 10 C 0.45 15.58 7.95 71.23 0.57 16.15 16 11 O -0.54 -21.63 15.78 21.94 0.35 -21.29 16 12 O -0.37 -14.68 10.22 -51.35 -0.52 -15.21 16 13 C 0.09 4.17 5.40 71.98 0.39 4.56 16 14 C 0.03 1.65 5.35 29.85 0.16 1.81 16 15 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 16 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 19 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C -0.10 -2.38 9.36 22.27 0.21 -2.18 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 28 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 29 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 2.55 8.09 -2.38 -0.02 2.53 16 33 H 0.14 2.51 8.08 -2.39 -0.02 2.49 16 34 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 35 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -71.34 343.42 5.89 -65.45 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.02 Total: 8.90 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 4.33 Total: -18.62 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.28 Total: -55.36 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.77 Total: -46.19 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.34 5.89 -65.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188432052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.446 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds