Wall clock time and date at job start Mon Mar 30 2020 23:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46791 * 29.99676 * 4 3 2 6 6 C 1.50705 * 109.46900 * 270.00371 * 4 3 2 7 7 O 1.20819 * 120.00234 * 354.99369 * 6 4 3 8 8 O 1.34231 * 119.99679 * 175.00159 * 6 4 3 9 9 C 1.45197 * 116.99767 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47258 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47286 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99627 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00247 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99557 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47434 * 59.99511 * 15 13 11 17 17 H 1.48499 * 109.47255 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46993 * 299.99730 * 15 13 11 19 19 C 1.50700 * 109.47296 * 149.99962 * 4 3 2 20 20 C 1.38233 * 119.99847 * 39.72880 * 19 4 3 21 21 C 1.38238 * 119.99584 * 179.78811 * 20 19 4 22 22 C 1.38236 * 120.00163 * 0.44016 * 21 20 19 23 23 C 1.38233 * 119.99636 * 359.81306 * 22 21 20 24 24 C 1.38232 * 119.99713 * 220.00049 * 19 4 3 25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 30 30 H 1.08995 * 109.47184 * 299.99952 * 9 8 6 31 31 H 1.09002 * 109.47377 * 59.99837 * 9 8 6 32 32 H 1.08999 * 109.46966 * 299.99881 * 10 9 8 33 33 H 1.09002 * 109.46753 * 59.99830 * 10 9 8 34 34 H 0.97005 * 119.99460 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.99955 * 359.97438 * 20 19 4 36 36 H 1.08001 * 119.99765 * 180.27450 * 21 20 19 37 37 H 1.07997 * 119.99905 * 179.83735 * 22 21 20 38 38 H 1.08004 * 119.99330 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.00408 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9322 1.4996 1.4201 7 8 3.1465 1.5287 2.3374 8 8 5.2517 1.5025 1.6663 9 6 5.6624 1.5419 3.0584 10 6 7.1903 1.5387 3.1397 11 6 7.6166 1.5790 4.5846 12 1 6.8722 1.6048 5.3666 13 6 8.9569 1.5840 4.9080 14 7 9.8632 1.5531 3.9556 15 14 9.4853 1.6346 6.6990 16 1 8.9497 0.4442 7.4070 17 1 10.9682 1.6314 6.7779 18 1 8.9579 2.8681 7.3359 19 6 3.8342 2.7266 -0.7110 20 6 3.1028 3.8851 -0.5271 21 6 3.4754 5.0478 -1.1754 22 6 4.5739 5.0498 -2.0145 23 6 5.3021 3.8899 -2.2024 24 6 4.9321 2.7283 -1.5508 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.2753 2.4472 3.5259 31 1 5.2695 0.6681 3.5781 32 1 7.5771 0.6331 2.6723 33 1 7.5836 2.4124 2.6199 34 1 10.8062 1.5562 4.1832 35 1 2.2421 3.8825 0.1253 36 1 2.9066 5.9541 -1.0283 37 1 4.8633 5.9575 -2.5230 38 1 6.1606 3.8916 -2.8577 39 1 5.5012 1.8221 -1.6975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194867820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:28 Heat of formation + Delta-G solvation = -118.782411 kcal Electronic energy + Delta-G solvation = -21219.693667 eV Core-core repulsion = 17899.205871 eV Total energy + Delta-G solvation = -3320.487796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46773 -39.00971 -37.86725 -35.91545 -33.38891 -32.82600 -30.99592 -30.67250 -30.25895 -27.24943 -24.88677 -23.23587 -22.47459 -22.14303 -21.04915 -20.41317 -17.79468 -17.10767 -16.97753 -16.40545 -16.04517 -15.74074 -15.22335 -15.03853 -14.60002 -14.48157 -14.05949 -13.38578 -13.26424 -13.02971 -12.69188 -12.57026 -12.36976 -12.34455 -11.96435 -11.45622 -11.26918 -11.15749 -11.05511 -10.98207 -10.76339 -10.73043 -10.57128 -9.88104 -9.64763 -9.51843 -9.30903 -8.91251 -8.78423 -8.44256 -6.10475 -4.14909 1.21453 1.41258 2.48735 2.89250 3.29982 3.33839 3.36898 3.49482 3.91839 4.39064 4.55033 4.71322 4.89532 4.97215 4.98670 5.11754 5.14477 5.18705 5.22959 5.26009 5.45865 5.49203 5.60804 5.76552 5.87482 5.95044 6.02830 6.07430 6.09611 6.40450 6.47155 6.49152 6.63034 6.87607 6.93162 6.97723 7.55274 7.62174 7.86363 8.17381 8.25591 8.90226 9.49388 11.00949 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.004225 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.284744 B = 6625.300065 C = 7829.536465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.145 3.855 5 H 0.104 0.896 6 C 0.435 3.565 7 O -0.501 6.501 8 O -0.352 6.352 9 C 0.075 3.925 10 C 0.026 3.974 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.089 4.089 20 C -0.086 4.086 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.090 4.090 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 1.049 -14.386 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 O -0.268 6.268 4 C 0.085 3.915 5 H 0.122 0.878 6 C 0.277 3.723 7 O -0.389 6.389 8 O -0.268 6.268 9 C 0.003 3.997 10 C -0.011 4.011 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.089 4.089 20 C -0.104 4.104 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.108 4.108 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.227 1.208 -14.100 20.066 hybrid contribution 0.514 -0.213 1.244 1.363 sum -13.712 0.995 -12.856 18.823 Atomic orbital electron populations 1.21704 0.93191 1.02323 1.03267 1.22670 0.96150 0.83188 1.00496 1.88010 1.17414 1.27229 1.94186 1.20211 0.83190 0.98398 0.89679 0.87793 1.24075 0.82291 0.73568 0.92400 1.90631 1.57126 1.44775 1.46342 1.86527 1.23540 1.82304 1.34438 1.23660 0.99818 1.00865 0.75406 1.19154 0.85333 0.98852 0.97747 1.20942 0.92067 1.52291 0.91261 0.92339 1.24971 0.96476 0.94833 0.97774 1.69964 1.01003 1.49673 1.32176 0.86536 0.77418 0.78804 0.84563 1.20071 1.21092 1.20051 1.19224 0.97387 0.93353 0.98947 1.21030 0.99071 0.91854 0.98491 1.21137 0.97648 0.97942 0.97627 1.21219 0.95393 0.98169 0.98192 1.21102 0.99901 0.92677 1.00238 1.20991 0.95427 0.99165 0.95255 0.91527 0.90962 0.91844 0.92764 0.92892 0.92346 0.92385 0.95388 0.95317 0.92658 0.85455 0.85883 0.85972 0.85570 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.05 0.57 6.46 37.16 0.24 0.81 16 3 O -0.35 -4.91 8.84 -55.14 -0.49 -5.40 16 4 C 0.14 2.09 2.83 -29.03 -0.08 2.01 16 5 H 0.10 1.22 7.65 -51.93 -0.40 0.83 16 6 C 0.44 8.12 7.22 36.01 0.26 8.38 16 7 O -0.50 -10.54 16.25 -25.46 -0.41 -10.95 16 8 O -0.35 -7.28 10.21 -39.26 -0.40 -7.68 16 9 C 0.07 1.72 5.40 37.16 0.20 1.92 16 10 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 11 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 C -0.09 -1.25 4.95 -104.63 -0.52 -1.76 16 20 C -0.09 -1.18 9.35 -39.58 -0.37 -1.55 16 21 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.11 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 24 C -0.09 -1.14 9.67 -39.58 -0.38 -1.52 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 1.76 7.77 -52.48 -0.41 1.35 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.41 8.04 -52.49 -0.42 0.98 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -32.55 342.57 -8.29 -40.83 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.84 Total: -1.72 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.02 Total: -11.04 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.30 Total: -24.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.55 -8.29 -40.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194867820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.951 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds