Wall clock time and date at job start Mon Mar 30 2020 23:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46791 * 29.99676 * 4 3 2 6 6 C 1.50705 * 109.46900 * 270.00371 * 4 3 2 7 7 O 1.20819 * 120.00234 * 354.99369 * 6 4 3 8 8 O 1.34231 * 119.99679 * 175.00159 * 6 4 3 9 9 C 1.45197 * 116.99767 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47258 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47286 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99627 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00247 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99557 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47434 * 59.99511 * 15 13 11 17 17 H 1.48499 * 109.47255 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46993 * 299.99730 * 15 13 11 19 19 C 1.50700 * 109.47296 * 149.99962 * 4 3 2 20 20 C 1.38233 * 119.99847 * 39.72880 * 19 4 3 21 21 C 1.38238 * 119.99584 * 179.78811 * 20 19 4 22 22 C 1.38236 * 120.00163 * 0.44016 * 21 20 19 23 23 C 1.38233 * 119.99636 * 359.81306 * 22 21 20 24 24 C 1.38232 * 119.99713 * 220.00049 * 19 4 3 25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 30 30 H 1.08995 * 109.47184 * 299.99952 * 9 8 6 31 31 H 1.09002 * 109.47377 * 59.99837 * 9 8 6 32 32 H 1.08999 * 109.46966 * 299.99881 * 10 9 8 33 33 H 1.09002 * 109.46753 * 59.99830 * 10 9 8 34 34 H 0.97005 * 119.99460 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.99955 * 359.97438 * 20 19 4 36 36 H 1.08001 * 119.99765 * 180.27450 * 21 20 19 37 37 H 1.07997 * 119.99905 * 179.83735 * 22 21 20 38 38 H 1.08004 * 119.99330 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.00408 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9322 1.4996 1.4201 7 8 3.1465 1.5287 2.3374 8 8 5.2517 1.5025 1.6663 9 6 5.6624 1.5419 3.0584 10 6 7.1903 1.5387 3.1397 11 6 7.6166 1.5790 4.5846 12 1 6.8722 1.6048 5.3666 13 6 8.9569 1.5840 4.9080 14 7 9.8632 1.5531 3.9556 15 14 9.4853 1.6346 6.6990 16 1 8.9497 0.4442 7.4070 17 1 10.9682 1.6314 6.7779 18 1 8.9579 2.8681 7.3359 19 6 3.8342 2.7266 -0.7110 20 6 3.1028 3.8851 -0.5271 21 6 3.4754 5.0478 -1.1754 22 6 4.5739 5.0498 -2.0145 23 6 5.3021 3.8899 -2.2024 24 6 4.9321 2.7283 -1.5508 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 5.2753 2.4472 3.5259 31 1 5.2695 0.6681 3.5781 32 1 7.5771 0.6331 2.6723 33 1 7.5836 2.4124 2.6199 34 1 10.8062 1.5562 4.1832 35 1 2.2421 3.8825 0.1253 36 1 2.9066 5.9541 -1.0283 37 1 4.8633 5.9575 -2.5230 38 1 6.1606 3.8916 -2.8577 39 1 5.5012 1.8221 -1.6975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194867820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:27 Heat of formation + Delta-G solvation = -135.953903 kcal Electronic energy + Delta-G solvation = -21220.438278 eV Core-core repulsion = 17899.205871 eV Total energy + Delta-G solvation = -3321.232407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86693 -40.14925 -38.96294 -37.54092 -35.48323 -33.84882 -32.33858 -31.87759 -31.51699 -28.51997 -26.82596 -24.15631 -23.62492 -23.22974 -22.79477 -21.81279 -19.27172 -18.38508 -18.24514 -18.13096 -17.49400 -17.14152 -16.56793 -16.37192 -15.99172 -15.52380 -15.13101 -14.94857 -14.49054 -14.38849 -14.27141 -13.67361 -13.47890 -13.25114 -13.15521 -13.14299 -12.91957 -12.61737 -12.60851 -12.31766 -12.14398 -11.97209 -11.88480 -11.67500 -11.53732 -11.48697 -10.76750 -10.62315 -9.84076 -9.78368 -8.28192 -6.41803 0.24474 0.48303 1.02267 1.38915 1.43626 1.48186 1.54684 2.37408 2.47197 2.91134 3.05996 3.51141 3.63317 3.71519 4.07167 4.11526 4.14787 4.15744 4.19817 4.26210 4.30502 4.40974 4.59811 4.63680 4.64162 4.78774 4.96839 4.98796 5.12854 5.19185 5.21746 5.43392 5.46198 5.50221 5.52782 5.59067 5.70534 5.88687 6.04608 6.05736 6.62163 6.71099 7.27887 8.84095 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.004225 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.284744 B = 6625.300065 C = 7829.536465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 O -0.362 6.362 4 C 0.154 3.846 5 H 0.133 0.867 6 C 0.434 3.566 7 O -0.529 6.529 8 O -0.356 6.356 9 C 0.090 3.910 10 C 0.035 3.965 11 C -0.554 4.554 12 H 0.063 0.937 13 C 0.009 3.991 14 N -0.924 5.924 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.111 4.111 23 C -0.126 4.126 24 C -0.102 4.102 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.009 0.991 33 H 0.006 0.994 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 1.269 -14.989 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 O -0.280 6.280 4 C 0.094 3.906 5 H 0.150 0.850 6 C 0.277 3.723 7 O -0.419 6.419 8 O -0.273 6.273 9 C 0.016 3.984 10 C -0.002 4.002 11 C -0.592 4.592 12 H 0.081 0.919 13 C -0.190 4.190 14 N -0.563 5.563 15 Si 0.796 3.204 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.329 1.424 -14.720 20.592 hybrid contribution 0.493 -0.261 1.338 1.450 sum -13.836 1.163 -13.382 19.284 Atomic orbital electron populations 1.21725 0.91714 1.03776 1.02872 1.22961 0.97452 0.82073 1.01082 1.88022 1.17079 1.29085 1.93861 1.20307 0.83584 1.00051 0.86630 0.84991 1.25128 0.80987 0.72013 0.94175 1.90608 1.57387 1.46116 1.47747 1.86522 1.25297 1.82743 1.32708 1.23193 0.97502 1.00691 0.76975 1.18948 0.87636 0.96771 0.96883 1.21328 0.92814 1.52886 0.92150 0.91905 1.25932 0.96363 0.93945 1.02755 1.70080 1.01510 1.50081 1.34636 0.85395 0.77248 0.79278 0.78506 1.19052 1.20253 1.19186 1.19319 0.98472 0.93172 1.00043 1.21116 0.99278 0.92843 0.99310 1.21438 0.98147 0.98012 0.97249 1.21620 0.94561 0.99218 0.97471 1.21491 1.00510 0.92316 1.00044 1.21257 0.95085 1.00431 0.95226 0.93054 0.88586 0.91066 0.94207 0.90191 0.92785 0.92171 0.97216 0.97575 0.92251 0.86631 0.83818 0.83033 0.83122 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.04 0.86 6.46 71.98 0.46 1.32 16 3 O -0.36 -10.06 8.84 -129.95 -1.15 -11.21 16 4 C 0.15 4.40 2.83 29.10 0.08 4.48 16 5 H 0.13 2.95 7.65 -2.39 -0.02 2.93 16 6 C 0.43 16.39 7.22 71.24 0.51 16.91 16 7 O -0.53 -22.78 16.25 28.40 0.46 -22.32 16 8 O -0.36 -15.01 10.21 -51.43 -0.53 -15.53 16 9 C 0.09 4.21 5.40 71.98 0.39 4.60 16 10 C 0.03 1.90 5.35 29.85 0.16 2.06 16 11 C -0.55 -31.86 9.11 25.60 0.23 -31.63 16 12 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 13 C 0.01 0.54 5.46 84.66 0.46 1.00 16 14 N -0.92 -55.31 13.29 21.45 0.28 -55.02 16 15 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 C -0.11 -3.03 4.95 -19.87 -0.10 -3.13 16 20 C -0.11 -2.92 9.35 22.27 0.21 -2.71 16 21 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 22 C -0.11 -2.17 10.05 22.27 0.22 -1.95 16 23 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 24 C -0.10 -2.45 9.67 22.27 0.22 -2.24 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.05 2.56 8.13 -2.39 -0.02 2.54 16 31 H 0.06 2.77 8.13 -2.39 -0.02 2.75 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 35 H 0.12 3.30 7.77 -2.91 -0.02 3.28 16 36 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.14 2.89 8.04 -2.91 -0.02 2.87 16 Total: -1.00 -70.52 342.57 6.16 -64.36 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.02 Total: 11.99 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.04 Total: -18.07 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.28 Total: -55.02 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -1.21 Total: -49.07 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.52 6.16 -64.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194867820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.592 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds