Wall clock time and date at job start Mon Mar 30 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48490 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47210 * 300.00701 * 3 2 1 6 6 H 1.48504 * 109.46599 * 60.00022 * 3 2 1 7 7 C 1.40051 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00129 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99464 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00494 * 354.79619 * 9 7 2 11 11 N 1.34786 * 119.99569 * 175.07324 * 9 7 2 12 12 C 1.46967 * 120.59293 * 184.58154 * 11 9 7 13 13 C 1.53809 * 108.39954 * 124.75583 * 12 11 9 14 14 N 1.46969 * 108.57674 * 49.63541 * 13 12 11 15 15 C 1.34780 * 120.58983 * 124.62951 * 14 13 12 16 16 O 1.21607 * 120.00144 * 5.17367 * 15 14 13 17 17 C 1.47103 * 119.99363 * 185.18099 * 15 14 13 18 18 C 1.33000 * 119.99361 * 174.86325 * 17 15 14 19 19 C 1.50699 * 119.99758 * 179.97438 * 18 17 15 20 20 C 1.52999 * 117.49893 * 188.62518 * 19 18 17 21 21 C 1.52994 * 117.50233 * 120.00161 * 19 18 17 22 22 C 1.46967 * 118.81419 * 304.64634 * 14 13 12 23 23 C 1.46955 * 120.59337 * 4.85996 * 11 9 7 24 24 H 0.96999 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.61023 * 244.54072 * 12 11 9 26 26 H 1.09008 * 109.60702 * 5.04973 * 12 11 9 27 27 H 1.09010 * 109.74147 * 289.84778 * 13 12 11 28 28 H 1.08995 * 109.53663 * 169.30483 * 13 12 11 29 29 H 1.08000 * 120.00240 * 354.86559 * 17 15 14 30 30 H 1.07999 * 119.99877 * 0.02562 * 18 17 15 31 31 H 1.09004 * 115.54763 * 334.33278 * 19 18 17 32 32 H 1.08993 * 117.49939 * 359.97438 * 20 19 18 33 33 H 1.08995 * 117.49953 * 145.02185 * 20 19 18 34 34 H 1.09004 * 117.50367 * 214.98279 * 21 19 18 35 35 H 1.09009 * 117.49556 * 359.97438 * 21 19 18 36 36 H 1.08997 * 109.60680 * 295.48514 * 22 14 13 37 37 H 1.08995 * 109.60656 * 174.97040 * 22 14 13 38 38 H 1.09005 * 109.61281 * 354.94664 * 23 11 9 39 39 H 1.09001 * 109.61210 * 115.46322 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3966 -1.2124 6 1 1.8819 2.3964 1.2126 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4804 -0.0017 10 8 0.0620 -2.4827 0.0934 11 7 1.9455 -3.6454 -0.1025 12 6 1.2199 -4.9193 -0.2058 13 6 1.6981 -5.6491 -1.4724 14 7 3.1676 -5.6687 -1.4749 15 6 3.8378 -6.8338 -1.5748 16 8 3.2301 -7.8710 -1.7585 17 6 5.3044 -6.8506 -1.4616 18 6 5.9577 -8.0091 -1.4577 19 6 7.4602 -8.0264 -1.3422 20 6 8.1689 -9.3670 -1.5456 21 6 8.0683 -8.7596 -0.1450 22 6 3.8932 -4.3953 -1.3660 23 6 3.4149 -3.6651 -0.1049 24 1 -0.4850 0.8401 0.0004 25 1 1.4274 -5.5308 0.6723 26 1 0.1493 -4.7259 -0.2752 27 1 1.3377 -5.1248 -2.3576 28 1 1.3185 -6.6708 -1.4697 29 1 5.8505 -5.9223 -1.3815 30 1 5.4115 -8.9373 -1.5381 31 1 7.9691 -7.1291 -1.6943 32 1 7.5485 -10.2364 -1.7625 33 1 9.1443 -9.3519 -2.0318 34 1 8.9776 -8.3449 0.2904 35 1 7.3816 -9.2291 0.5595 36 1 3.6891 -3.7819 -2.2435 37 1 4.9633 -4.5892 -1.2928 38 1 3.7945 -2.6433 -0.1077 39 1 3.7752 -4.1894 0.7802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219506488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:34 Heat of formation + Delta-G solvation = -37.703928 kcal Electronic energy + Delta-G solvation = -21304.966404 eV Core-core repulsion = 18020.287187 eV Total energy + Delta-G solvation = -3284.679218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28893 -39.71574 -38.42758 -37.51265 -34.84664 -34.45017 -33.65551 -32.23786 -29.14654 -27.98649 -25.67440 -24.46236 -23.34906 -23.18620 -21.72681 -20.68291 -19.73386 -18.80341 -18.02017 -17.42497 -17.26628 -16.46475 -16.29258 -16.03134 -15.89642 -15.70371 -15.38404 -14.70159 -14.51326 -14.41067 -13.71945 -13.61029 -13.27679 -13.13324 -12.83084 -12.75685 -12.57644 -12.37125 -12.31992 -12.29422 -12.08316 -11.94701 -11.89844 -11.32998 -10.94242 -10.87889 -10.21754 -9.94853 -9.77644 -9.00518 -8.28414 -6.83254 0.32101 1.43015 1.43834 1.61427 1.89264 2.20801 2.26206 2.47384 2.80988 3.05592 3.41632 3.59578 3.84607 3.95156 3.98111 4.00062 4.08271 4.12922 4.23122 4.33711 4.43661 4.47522 4.59305 4.68384 4.76579 4.82796 4.83591 5.03865 5.06930 5.15922 5.25930 5.28296 5.41083 5.47417 5.50837 5.71919 6.12601 6.30611 6.42392 6.89111 7.09382 7.39855 8.45678 8.67838 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.003732 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.828970 B = 7500.237080 C = 8334.285287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.237 1.237 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.563 4.563 8 H 0.103 0.897 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.646 5.646 12 C 0.112 3.888 13 C 0.111 3.889 14 N -0.603 5.603 15 C 0.541 3.459 16 O -0.596 6.596 17 C -0.222 4.222 18 C -0.024 4.024 19 C -0.148 4.148 20 C -0.169 4.169 21 C -0.163 4.163 22 C 0.096 3.904 23 C 0.102 3.898 24 H 0.273 0.727 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.161 0.839 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.278 -10.967 -2.755 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.160 1.160 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.599 4.599 8 H 0.121 0.879 9 C 0.347 3.653 10 O -0.521 6.521 11 N -0.383 5.383 12 C -0.013 4.013 13 C -0.013 4.013 14 N -0.334 5.334 15 C 0.334 3.666 16 O -0.480 6.480 17 C -0.242 4.242 18 C -0.044 4.044 19 C -0.166 4.166 20 C -0.206 4.206 21 C -0.200 4.200 22 C -0.027 4.027 23 C -0.021 4.021 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.178 0.822 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.133 -11.398 -2.797 22.446 hybrid contribution -0.751 0.655 0.058 0.998 sum 18.382 -10.743 -2.738 21.467 Atomic orbital electron populations 1.70211 1.09754 1.28853 1.36661 1.27043 0.95448 1.05134 0.91179 0.84977 0.79860 0.75345 0.78182 1.15977 1.19714 1.19942 1.21533 0.95055 0.89241 1.54116 0.87931 1.18781 0.86584 0.84113 0.75864 1.90552 1.16868 1.87277 1.57357 1.48066 1.06678 1.05042 1.78502 1.21581 0.97541 0.85616 0.96586 1.21867 0.80479 1.01355 0.97588 1.48034 1.06529 1.07328 1.71510 1.19206 0.89694 0.82207 0.75444 1.90719 1.71318 1.33417 1.52513 1.22587 0.90912 1.01144 1.09551 1.23184 0.94804 0.97549 0.88841 1.21385 0.90279 0.98889 1.06035 1.23118 1.02616 0.95161 0.99658 1.23072 1.02980 1.02839 0.91083 1.22462 0.98417 0.83203 0.98619 1.22085 0.80115 1.02743 0.97185 0.91710 0.92662 0.91525 0.92046 0.88829 0.82220 0.87293 0.84933 0.88738 0.86617 0.86493 0.89016 0.90971 0.84788 0.87479 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.80 11.84 21.84 0.26 -49.55 16 2 C 0.03 1.44 5.50 85.30 0.47 1.91 16 3 Si 1.00 38.96 29.56 68.60 2.03 40.98 16 4 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.56 -30.15 8.88 24.83 0.22 -29.92 16 8 H 0.10 4.70 5.63 -2.91 -0.02 4.68 16 9 C 0.54 30.65 7.62 86.36 0.66 31.31 16 10 O -0.63 -42.34 14.46 -4.32 -0.06 -42.40 16 11 N -0.65 -28.76 2.94 -822.23 -2.42 -31.18 16 12 C 0.11 4.56 6.61 86.56 0.57 5.14 16 13 C 0.11 3.92 6.60 86.56 0.57 4.49 16 14 N -0.60 -18.45 2.95 -821.41 -2.42 -20.88 16 15 C 0.54 16.30 7.63 86.57 0.66 16.96 16 16 O -0.60 -22.26 15.66 -4.05 -0.06 -22.32 16 17 C -0.22 -4.64 9.00 23.43 0.21 -4.42 16 18 C -0.02 -0.45 9.24 24.52 0.23 -0.22 16 19 C -0.15 -1.87 6.01 -11.54 -0.07 -1.94 16 20 C -0.17 -1.77 10.23 30.59 0.31 -1.46 16 21 C -0.16 -1.76 10.23 30.59 0.31 -1.45 16 22 C 0.10 2.47 6.51 86.42 0.56 3.04 16 23 C 0.10 3.33 6.50 86.42 0.56 3.89 16 24 H 0.27 14.95 8.29 -92.71 -0.77 14.18 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 3.11 7.02 -2.38 -0.02 3.09 16 27 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.09 3.26 7.02 -2.39 -0.02 3.24 16 29 H 0.16 2.30 5.85 -2.91 -0.02 2.28 16 30 H 0.11 2.44 7.50 -2.91 -0.02 2.42 16 31 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.13 2.23 5.29 -2.39 -0.01 2.22 16 38 H 0.11 3.48 5.29 -2.38 -0.01 3.46 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -79.82 324.46 3.66 -76.16 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.06 Total: 21.85 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 5.27 Total: 27.32 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.58 Total: -101.60 kcal Atomic # 8 Polarization: -64.59 SS G_CDS: -0.13 Total: -64.72 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.98 kcal Total: -79.82 3.66 -76.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219506488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.459 kcal (2) G-P(sol) polarization free energy of solvation -79.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds