Wall clock time and date at job start Tue Mar 31 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47158 * 239.99671 * 3 2 1 5 5 H 1.48499 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46591 * 120.00316 * 3 2 1 7 7 C 1.37870 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00359 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00012 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47487 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00262 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00106 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99972 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00250 * 0.02562 * 13 11 10 15 15 C 1.52995 * 109.47129 * 270.00180 * 14 13 11 16 16 O 1.42897 * 109.47648 * 64.99543 * 15 14 13 17 17 C 1.46497 * 119.99954 * 179.97438 * 13 11 10 18 18 C 1.50707 * 109.47012 * 90.00156 * 17 13 11 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 13 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 13 24 24 H 0.97006 * 119.99811 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46837 * 59.99738 * 9 7 2 26 26 H 1.08997 * 109.46907 * 300.00379 * 9 7 2 27 27 H 0.97010 * 119.99828 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46912 * 29.99983 * 14 13 11 29 29 H 1.08999 * 109.47052 * 149.99633 * 14 13 11 30 30 H 1.09001 * 109.47258 * 185.00053 * 15 14 13 31 31 H 1.09001 * 109.47032 * 304.99454 * 15 14 13 32 32 H 0.96695 * 114.00483 * 179.97438 * 16 15 14 33 33 H 1.09005 * 109.47643 * 330.00617 * 17 13 11 34 34 H 1.09000 * 109.47513 * 209.99781 * 17 13 11 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5583 -5.1055 0.0009 13 7 2.6295 -5.9077 -0.0005 14 6 4.0698 -5.6401 -0.0011 15 6 4.5706 -5.5467 -1.4438 16 8 3.9756 -4.4152 -2.0823 17 6 2.1411 -7.2889 0.0006 18 6 1.9722 -7.7631 -1.4199 19 6 3.0234 -8.3797 -2.0724 20 6 2.8682 -8.8152 -3.3751 21 6 1.6617 -8.6346 -4.0252 22 6 0.6122 -8.0132 -3.3746 23 6 0.7659 -7.5819 -2.0702 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 4.2646 -4.6988 0.5128 29 1 4.5898 -6.4487 0.5124 30 1 5.6550 -5.4363 -1.4455 31 1 4.2970 -6.4537 -1.9828 32 1 4.2489 -4.2937 -3.0018 33 1 1.1814 -7.3347 0.5154 34 1 2.8597 -7.9280 0.5139 35 1 3.9659 -8.5212 -1.5643 36 1 3.6896 -9.2965 -3.8850 37 1 1.5404 -8.9752 -5.0429 38 1 -0.3290 -7.8682 -3.8839 39 1 -0.0556 -7.1009 -1.5602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242926521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:01 Heat of formation + Delta-G solvation = -48.277542 kcal Electronic energy + Delta-G solvation = -22062.028417 eV Core-core repulsion = 18776.890693 eV Total energy + Delta-G solvation = -3285.137724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90071 -38.63996 -36.74800 -34.95965 -33.96943 -32.37443 -31.38625 -30.83484 -28.99249 -27.31031 -25.41195 -22.90220 -22.47558 -22.26112 -21.16554 -19.01150 -17.94849 -17.31534 -16.86531 -15.93605 -15.61902 -15.38482 -14.88264 -14.72957 -14.55112 -14.19488 -13.55835 -13.32866 -13.21009 -13.08281 -12.87773 -12.50287 -12.28177 -11.88572 -11.78786 -11.49132 -11.31879 -11.06054 -10.88640 -10.83197 -10.78075 -10.17502 -9.87192 -9.24883 -9.24258 -8.79352 -8.66533 -8.58912 -8.31357 -7.50237 -6.04134 -4.08976 1.37489 1.49757 3.28861 3.32306 3.36713 3.39421 3.97715 4.09115 4.39801 4.41312 4.80268 4.89442 4.98347 5.04430 5.14527 5.18008 5.28910 5.31830 5.39200 5.46017 5.55220 5.56164 5.74792 5.84036 5.93822 6.07894 6.16757 6.49295 6.62064 6.73504 6.90202 7.09959 7.29052 7.66404 7.72405 7.74995 7.83617 8.00580 8.16433 8.91541 9.11894 9.48953 9.65657 11.06348 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004518 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.918908 B = 6196.577363 C = 6438.180929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.269 3.731 10 N -0.714 5.714 11 C 0.703 3.297 12 O -0.604 6.604 13 N -0.629 5.629 14 C 0.113 3.887 15 C 0.048 3.952 16 O -0.552 6.552 17 C 0.172 3.828 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.087 4.087 24 H 0.264 0.736 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.389 0.611 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.374 0.626 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.405 -17.649 -4.722 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.148 3.852 10 N -0.366 5.366 11 C 0.405 3.595 12 O -0.484 6.484 13 N -0.367 5.367 14 C -0.011 4.011 15 C -0.032 4.032 16 O -0.356 6.356 17 C 0.048 3.952 18 C -0.098 4.098 19 C -0.131 4.131 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.106 4.106 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.224 0.776 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.220 0.780 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.051 -17.531 -4.089 20.149 hybrid contribution 1.315 0.942 -0.789 1.800 sum 10.366 -16.589 -4.878 20.161 Atomic orbital electron populations 1.69977 1.06043 1.27109 1.49484 1.24924 0.94867 0.99229 0.95033 0.86507 0.79397 0.82568 0.78567 1.20184 1.21185 1.20201 1.21193 0.93166 0.90498 1.52343 0.92171 1.18894 0.87847 0.81315 0.97169 1.45683 1.10963 1.04028 1.75960 1.15972 0.84600 0.81110 0.77862 1.90817 1.14066 1.84033 1.59505 1.47060 1.04877 1.04792 1.79983 1.21533 0.82013 1.02476 0.95110 1.22835 0.95562 0.89871 0.94926 1.86675 1.71752 1.47405 1.29743 1.20133 1.01425 0.81522 0.92094 1.20382 0.93856 0.97987 0.97607 1.20948 0.98030 0.99143 0.94983 1.21027 0.97487 1.01258 0.95121 1.21101 0.93637 0.99776 0.99609 1.21197 0.99011 0.98770 0.95128 1.21317 0.97883 0.96827 0.94575 0.92596 0.96040 0.96126 0.77611 0.89940 0.89487 0.93712 0.92939 0.77965 0.89030 0.90498 0.86585 0.86589 0.86579 0.86283 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.16 9.28 -34.44 -0.32 -15.48 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.59 5.43 -5.19 -0.03 7.56 16 10 N -0.71 -16.55 4.81 -66.42 -0.32 -16.87 16 11 C 0.70 15.42 7.90 -86.92 -0.69 14.73 16 12 O -0.60 -15.41 15.45 5.29 0.08 -15.32 16 13 N -0.63 -10.13 2.44 -180.80 -0.44 -10.57 16 14 C 0.11 1.40 5.76 -4.04 -0.02 1.38 16 15 C 0.05 0.55 7.39 37.16 0.27 0.82 16 16 O -0.55 -8.26 11.78 -35.23 -0.42 -8.67 16 17 C 0.17 2.35 5.58 -5.19 -0.03 2.32 16 18 C -0.10 -1.32 5.30 -104.62 -0.55 -1.87 16 19 C -0.11 -1.26 7.47 -39.58 -0.30 -1.55 16 20 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 21 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 23 C -0.09 -1.33 9.70 -39.58 -0.38 -1.71 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.39 8.20 5.25 -40.82 -0.21 7.99 16 28 H 0.08 1.10 6.36 -51.93 -0.33 0.77 16 29 H 0.09 0.76 7.89 -51.93 -0.41 0.35 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.59 5.17 -51.93 -0.27 0.32 16 32 H 0.37 4.17 9.12 45.56 0.42 4.59 16 33 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 34 H 0.08 0.77 7.84 -51.93 -0.41 0.37 16 35 H 0.12 1.02 7.81 -52.48 -0.41 0.61 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.13 2.26 7.58 -52.49 -0.40 1.86 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -35.31 326.91 -8.26 -43.57 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.47 Total: 10.43 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -3.34 Total: 2.28 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.02 Total: -53.71 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.33 Total: -24.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.31 -8.26 -43.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242926521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.707 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds