Wall clock time and date at job start Tue Mar 31 2020 00:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47158 * 239.99671 * 3 2 1 5 5 H 1.48499 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46591 * 120.00316 * 3 2 1 7 7 C 1.37870 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00359 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00012 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47487 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00262 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00106 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99972 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00250 * 0.02562 * 13 11 10 15 15 C 1.52995 * 109.47129 * 270.00180 * 14 13 11 16 16 O 1.42897 * 109.47648 * 64.99543 * 15 14 13 17 17 C 1.46497 * 119.99954 * 179.97438 * 13 11 10 18 18 C 1.50707 * 109.47012 * 90.00156 * 17 13 11 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 13 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 13 24 24 H 0.97006 * 119.99811 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46837 * 59.99738 * 9 7 2 26 26 H 1.08997 * 109.46907 * 300.00379 * 9 7 2 27 27 H 0.97010 * 119.99828 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46912 * 29.99983 * 14 13 11 29 29 H 1.08999 * 109.47052 * 149.99633 * 14 13 11 30 30 H 1.09001 * 109.47258 * 185.00053 * 15 14 13 31 31 H 1.09001 * 109.47032 * 304.99454 * 15 14 13 32 32 H 0.96695 * 114.00483 * 179.97438 * 16 15 14 33 33 H 1.09005 * 109.47643 * 330.00617 * 17 13 11 34 34 H 1.09000 * 109.47513 * 209.99781 * 17 13 11 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5583 -5.1055 0.0009 13 7 2.6295 -5.9077 -0.0005 14 6 4.0698 -5.6401 -0.0011 15 6 4.5706 -5.5467 -1.4438 16 8 3.9756 -4.4152 -2.0823 17 6 2.1411 -7.2889 0.0006 18 6 1.9722 -7.7631 -1.4199 19 6 3.0234 -8.3797 -2.0724 20 6 2.8682 -8.8152 -3.3751 21 6 1.6617 -8.6346 -4.0252 22 6 0.6122 -8.0132 -3.3746 23 6 0.7659 -7.5819 -2.0702 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 4.2646 -4.6988 0.5128 29 1 4.5898 -6.4487 0.5124 30 1 5.6550 -5.4363 -1.4455 31 1 4.2970 -6.4537 -1.9828 32 1 4.2489 -4.2937 -3.0018 33 1 1.1814 -7.3347 0.5154 34 1 2.8597 -7.9280 0.5139 35 1 3.9659 -8.5212 -1.5643 36 1 3.6896 -9.2965 -3.8850 37 1 1.5404 -8.9752 -5.0429 38 1 -0.3290 -7.8682 -3.8839 39 1 -0.0556 -7.1009 -1.5602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000242926521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:00 Heat of formation + Delta-G solvation = -74.654632 kcal Electronic energy + Delta-G solvation = -22063.172213 eV Core-core repulsion = 18776.890693 eV Total energy + Delta-G solvation = -3286.281520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28730 -39.83094 -37.93225 -36.39462 -35.88433 -34.33457 -32.61751 -31.78430 -30.09677 -29.27560 -26.80087 -24.55220 -23.71471 -23.42494 -22.30561 -20.72736 -19.46393 -18.42069 -17.98604 -17.83764 -17.17185 -16.61905 -16.41863 -15.91828 -15.83994 -15.49624 -15.08365 -14.81557 -14.39394 -14.25621 -14.18903 -13.91865 -13.70781 -13.44814 -13.29598 -12.89011 -12.70819 -12.63944 -12.47799 -12.17688 -11.98624 -11.80503 -11.46842 -11.06732 -10.79912 -10.75454 -9.94623 -9.75520 -9.63612 -9.29301 -8.25482 -6.41639 0.40377 0.53253 1.42481 1.48038 1.56035 1.93831 2.38348 2.41109 2.95931 3.08727 3.36872 3.52203 3.89840 3.97000 4.18374 4.21316 4.29076 4.33360 4.37490 4.61475 4.62880 4.66788 4.77947 4.80096 4.97051 5.09408 5.13911 5.19206 5.30870 5.51591 5.57776 5.64824 5.66883 5.78115 5.82434 5.92197 6.15889 6.20032 6.69712 6.99060 7.27716 7.34347 7.85804 8.87046 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004518 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.918908 B = 6196.577363 C = 6438.180929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.291 3.709 10 N -0.710 5.710 11 C 0.696 3.304 12 O -0.652 6.652 13 N -0.616 5.616 14 C 0.101 3.899 15 C 0.047 3.953 16 O -0.590 6.590 17 C 0.168 3.832 18 C -0.109 4.109 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.123 4.123 24 H 0.268 0.732 25 H -0.025 1.025 26 H -0.020 1.020 27 H 0.402 0.598 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.387 0.613 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.907 -18.708 -5.443 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.167 3.833 10 N -0.364 5.364 11 C 0.398 3.602 12 O -0.535 6.535 13 N -0.352 5.352 14 C -0.022 4.022 15 C -0.031 4.031 16 O -0.398 6.398 17 C 0.046 3.954 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.142 4.142 24 H 0.077 0.923 25 H -0.007 1.007 26 H -0.002 1.002 27 H 0.239 0.761 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.630 -18.658 -4.818 23.604 hybrid contribution -0.099 1.129 -0.602 1.284 sum 13.532 -17.529 -5.420 22.798 Atomic orbital electron populations 1.70155 1.08323 1.28512 1.50180 1.26080 0.95780 1.03859 0.93878 0.85180 0.77889 0.76453 0.79481 1.18746 1.20911 1.18541 1.21501 0.93970 0.90537 1.52650 0.90422 1.18277 0.88088 0.83814 0.93074 1.45278 1.10623 1.03653 1.76843 1.16241 0.84768 0.81786 0.77451 1.90786 1.16702 1.84822 1.61234 1.47024 1.05973 1.04140 1.78051 1.22021 0.79494 1.03981 0.96670 1.22974 0.97365 0.89104 0.93659 1.86634 1.72975 1.49042 1.31107 1.20371 1.01515 0.80665 0.92858 1.20380 0.94063 0.99118 0.97500 1.21284 0.98252 0.97372 0.95206 1.21498 0.97901 0.99914 0.94899 1.21447 0.93299 0.98635 1.00721 1.21327 1.00273 0.99653 0.94592 1.21215 0.98131 0.98961 0.95922 0.92313 1.00736 1.00198 0.76114 0.91136 0.84360 0.90035 0.92184 0.76452 0.92095 0.85427 0.82877 0.82895 0.83989 0.86204 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.29 21.44 0.28 -58.52 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 44.06 29.54 68.60 2.03 46.08 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.55 -31.93 9.28 25.60 0.24 -31.70 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.29 17.52 5.43 85.64 0.46 17.99 16 10 N -0.71 -34.37 4.81 -482.31 -2.32 -36.69 16 11 C 0.70 32.07 7.90 179.06 1.41 33.49 16 12 O -0.65 -36.17 15.45 -3.98 -0.06 -36.24 16 13 N -0.62 -19.48 2.44 -844.20 -2.06 -21.54 16 14 C 0.10 2.18 5.76 86.38 0.50 2.67 16 15 C 0.05 0.92 7.39 71.98 0.53 1.45 16 16 O -0.59 -16.87 11.78 -148.98 -1.76 -18.62 16 17 C 0.17 4.48 5.58 85.64 0.48 4.96 16 18 C -0.11 -2.89 5.30 -19.86 -0.11 -3.00 16 19 C -0.10 -1.90 7.47 22.27 0.17 -1.74 16 20 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 21 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 22 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 23 C -0.12 -4.02 9.70 22.27 0.22 -3.80 16 24 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 25 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 26 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 27 H 0.40 17.13 5.25 -92.70 -0.49 16.64 16 28 H 0.07 1.73 6.36 -2.39 -0.02 1.71 16 29 H 0.14 1.61 7.89 -2.39 -0.02 1.59 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.08 5.17 -2.39 -0.01 1.07 16 32 H 0.39 8.10 9.12 -74.06 -0.68 7.43 16 33 H 0.06 1.99 7.36 -2.38 -0.02 1.97 16 34 H 0.13 2.07 7.84 -2.39 -0.02 2.05 16 35 H 0.15 1.70 7.81 -2.91 -0.02 1.68 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.09 3.54 7.58 -2.91 -0.02 3.52 16 Total: -1.00 -84.51 326.91 1.06 -83.45 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.09 Total: 28.94 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.03 Total: 13.16 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -4.09 Total: -116.76 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -1.82 Total: -54.86 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -84.51 1.06 -83.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242926521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.792 kcal (2) G-P(sol) polarization free energy of solvation -84.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds