Wall clock time and date at job start Mon Mar 30 2020 23:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36014 * 116.99891 * 2 1 4 4 C 1.38706 * 120.02126 * 359.97438 * 3 2 1 5 5 C 1.38767 * 120.53484 * 180.02562 * 4 3 2 6 6 C 1.36497 * 120.58389 * 0.02618 * 5 4 3 7 7 C 1.40776 * 120.01873 * 359.70152 * 6 5 4 8 8 C 1.41175 * 120.26058 * 180.27974 * 7 6 5 9 9 H 1.08001 * 119.99513 * 150.22800 * 8 7 6 10 10 C 1.39919 * 120.00516 * 330.21724 * 8 7 6 11 11 N 1.30867 * 120.00158 * 161.78977 * 10 8 7 12 12 Si 1.86796 * 119.99904 * 341.79880 * 10 8 7 13 13 H 1.48505 * 109.47538 * 95.40519 * 12 10 8 14 14 H 1.48500 * 109.47272 * 215.40850 * 12 10 8 15 15 H 1.48498 * 109.47095 * 335.40731 * 12 10 8 16 16 C 1.38878 * 120.01943 * 180.02562 * 3 2 1 17 17 O 1.35750 * 120.28651 * 359.95030 * 16 3 2 18 18 C 1.42899 * 116.99484 * 89.99942 * 17 16 3 19 19 H 1.09002 * 109.52611 * 30.13260 * 18 17 16 20 20 C 1.53181 * 109.56887 * 150.28459 * 18 17 16 21 21 C 1.53185 * 109.03559 * 176.91948 * 20 18 17 22 22 C 1.53090 * 109.16208 * 303.02001 * 21 20 18 23 23 O 1.42907 * 109.41564 * 57.61083 * 22 21 20 24 24 C 1.42914 * 114.09387 * 298.83954 * 23 22 21 25 25 H 1.08997 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47337 * 299.99737 * 1 2 3 27 27 H 1.09007 * 109.47338 * 59.99695 * 1 2 3 28 28 H 1.07999 * 119.72925 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.71059 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.99009 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00418 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.54322 * 296.78652 * 20 18 17 33 33 H 1.09001 * 109.54429 * 57.05608 * 20 18 17 34 34 H 1.09001 * 109.52132 * 62.92440 * 21 20 18 35 35 H 1.08998 * 109.51979 * 183.11707 * 21 20 18 36 36 H 1.09000 * 109.47716 * 177.58953 * 22 21 20 37 37 H 1.08997 * 109.48211 * 297.61493 * 22 21 20 38 38 H 1.08995 * 109.48170 * 301.17383 * 24 23 22 39 39 H 1.08999 * 109.47470 * 181.13860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 -0.0005 5 6 1.9102 3.6175 -0.0011 6 6 3.2717 3.7150 -0.0016 7 6 4.0613 2.5496 0.0047 8 6 5.4699 2.6446 0.0101 9 1 6.0613 1.8721 0.4790 10 6 6.0997 3.7393 -0.5922 11 7 7.3416 4.0248 -0.2946 12 14 5.1676 4.7933 -1.8208 13 1 4.5897 5.9710 -1.1248 14 1 6.0969 5.2533 -2.8838 15 1 4.0750 3.9935 -2.4306 16 6 3.4333 1.2851 -0.0005 17 8 4.1787 0.1506 0.0000 18 6 4.5344 -0.3924 -1.2731 19 1 4.6213 0.4138 -2.0016 20 6 5.8736 -1.1275 -1.1613 21 6 6.2055 -1.7695 -2.5119 22 6 5.0624 -2.7030 -2.9190 23 8 3.8413 -1.9627 -2.9743 24 6 3.4560 -1.3790 -1.7280 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2131 2.3142 -0.0005 29 1 1.3094 4.5149 -0.0011 30 1 3.7433 4.6867 -0.0025 31 1 7.7782 4.7839 -0.7118 32 1 6.6570 -0.4192 -0.8920 33 1 5.8019 -1.9018 -0.3974 34 1 6.3260 -0.9912 -3.2654 35 1 7.1296 -2.3411 -2.4263 36 1 5.2734 -3.1299 -3.8995 37 1 4.9690 -3.5044 -2.1861 38 1 3.3414 -2.1630 -0.9794 39 1 2.5097 -0.8521 -1.8506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258222225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:40 Heat of formation + Delta-G solvation = -109.375730 kcal Electronic energy + Delta-G solvation = -22761.499636 eV Core-core repulsion = 19441.419745 eV Total energy + Delta-G solvation = -3320.079891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59118 -38.69888 -37.07418 -35.86717 -33.56231 -32.82740 -30.36831 -29.88573 -28.52654 -26.64770 -25.05892 -24.61422 -22.94467 -21.33572 -20.57074 -19.84862 -18.02157 -17.04688 -16.18674 -16.02411 -15.73797 -15.27947 -15.03340 -14.94986 -14.53633 -14.32847 -13.81096 -13.47504 -13.03713 -12.78454 -12.67815 -12.30578 -12.15897 -11.84577 -11.65735 -11.47026 -11.12130 -10.91065 -10.79177 -10.72969 -10.57699 -10.26255 -10.00064 -9.92703 -9.68369 -9.56994 -9.26730 -8.49785 -7.66256 -7.14315 -7.07464 -4.59493 2.35734 2.58191 3.03778 3.13817 3.24913 3.88845 3.94037 4.15834 4.34634 4.71804 5.14145 5.18860 5.25012 5.41663 5.45837 5.49605 5.56430 5.64166 5.74880 5.77010 5.90565 5.92376 6.03397 6.07412 6.18977 6.29970 6.33959 6.46073 6.59806 6.64905 6.68964 6.77077 7.03884 7.34663 7.46918 7.48499 7.58567 7.73670 8.16445 8.22088 8.40145 8.66706 8.96791 9.92802 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.008974 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.658956 B = 3119.269421 C = 4650.928645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C 0.146 3.854 4 C -0.321 4.321 5 C -0.047 4.047 6 C -0.252 4.252 7 C 0.105 3.895 8 C -0.420 4.420 9 H 0.100 0.900 10 C 0.084 3.916 11 N -0.794 5.794 12 Si 0.910 3.090 13 H -0.268 1.268 14 H -0.289 1.289 15 H -0.243 1.243 16 C -0.052 4.052 17 O -0.296 6.296 18 C 0.062 3.938 19 H 0.065 0.935 20 C -0.118 4.118 21 C -0.152 4.152 22 C 0.058 3.942 23 O -0.385 6.385 24 C 0.046 3.954 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.288 0.712 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -6.815 -3.770 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.101 3.899 4 C -0.341 4.341 5 C -0.066 4.066 6 C -0.271 4.271 7 C 0.101 3.899 8 C -0.447 4.447 9 H 0.118 0.882 10 C -0.137 4.137 11 N -0.417 5.417 12 Si 0.736 3.264 13 H -0.194 1.194 14 H -0.216 1.216 15 H -0.166 1.166 16 C -0.098 4.098 17 O -0.213 6.213 18 C 0.005 3.995 19 H 0.083 0.917 20 C -0.155 4.155 21 C -0.189 4.189 22 C -0.018 4.018 23 O -0.304 6.304 24 C -0.031 4.031 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.169 -6.968 -3.780 9.464 hybrid contribution -0.414 0.912 -0.387 1.074 sum -5.583 -6.056 -4.167 9.231 Atomic orbital electron populations 1.22848 0.80429 1.02285 1.00810 1.86080 1.19728 1.28180 1.89184 1.19222 0.91298 0.83397 0.95941 1.20315 0.97693 0.91993 1.24129 1.20152 0.94394 0.95645 0.96395 1.20675 0.93507 0.97376 1.15532 1.17689 0.93835 0.89502 0.88872 1.19424 0.90298 1.05433 1.29563 0.88248 1.26239 0.94974 0.96075 0.96388 1.69703 1.12632 1.24602 1.34774 0.86331 0.79991 0.80232 0.79852 1.19375 1.21638 1.16642 1.17730 0.84884 0.86282 1.20866 1.86097 1.70300 1.39107 1.25768 1.22745 0.93355 0.95345 0.88038 0.91670 1.21621 0.97414 0.99991 0.96509 1.22191 0.98728 0.99898 0.98131 1.22564 0.84643 0.93279 1.01354 1.87910 1.39994 1.69565 1.32960 1.23161 0.98759 0.96003 0.85138 0.89545 0.93354 0.93452 0.87804 0.88429 0.87794 0.90173 0.90267 0.91652 0.90980 0.90841 0.89369 0.93458 0.93010 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.32 -6.22 8.27 -34.32 -0.28 -6.50 16 3 C 0.15 3.25 6.57 -39.17 -0.26 2.99 16 4 C -0.32 -6.68 9.05 -39.21 -0.35 -7.04 16 5 C -0.05 -1.01 9.96 -40.01 -0.40 -1.41 16 6 C -0.25 -6.00 7.11 -39.25 -0.28 -6.28 16 7 C 0.10 2.68 5.11 -106.70 -0.55 2.13 16 8 C -0.42 -11.19 9.19 -37.84 -0.35 -11.53 16 9 H 0.10 2.84 7.90 -52.49 -0.41 2.42 16 10 C 0.08 2.14 5.40 -17.33 -0.09 2.05 16 11 N -0.79 -20.48 13.93 55.55 0.77 -19.71 16 12 Si 0.91 20.32 24.51 -169.99 -4.17 16.16 16 13 H -0.27 -5.77 6.71 56.52 0.38 -5.39 16 14 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.24 -5.62 6.86 56.52 0.39 -5.23 16 16 C -0.05 -1.27 5.61 -38.22 -0.21 -1.48 16 17 O -0.30 -6.98 8.86 -33.49 -0.30 -7.28 16 18 C 0.06 1.27 2.87 -26.59 -0.08 1.19 16 19 H 0.07 1.47 7.91 -51.93 -0.41 1.05 16 20 C -0.12 -2.07 5.68 -26.54 -0.15 -2.22 16 21 C -0.15 -2.17 6.14 -26.59 -0.16 -2.34 16 22 C 0.06 0.81 6.84 37.20 0.25 1.06 16 23 O -0.39 -6.69 10.77 -35.23 -0.38 -7.07 16 24 C 0.05 0.85 5.96 37.20 0.22 1.07 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.05 0.64 7.66 -51.92 -0.40 0.24 16 28 H 0.10 1.85 6.27 -52.49 -0.33 1.52 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.10 2.44 4.72 -52.49 -0.25 2.19 16 31 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.91 6.49 -51.93 -0.34 1.58 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -28.26 312.40 -6.57 -34.83 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.51 Total: 5.21 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.41 Total: -20.35 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.77 Total: -19.71 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.96 Total: -20.85 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.17 Total: 16.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.26 -6.57 -34.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258222225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.549 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds