Wall clock time and date at job start Mon Mar 30 2020 23:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36014 * 116.99891 * 2 1 4 4 C 1.38706 * 120.02126 * 359.97438 * 3 2 1 5 5 C 1.38767 * 120.53484 * 180.02562 * 4 3 2 6 6 C 1.36497 * 120.58389 * 0.02618 * 5 4 3 7 7 C 1.40776 * 120.01873 * 359.70152 * 6 5 4 8 8 C 1.41175 * 120.26058 * 180.27974 * 7 6 5 9 9 H 1.08001 * 119.99513 * 150.22800 * 8 7 6 10 10 C 1.39919 * 120.00516 * 330.21724 * 8 7 6 11 11 N 1.30867 * 120.00158 * 161.78977 * 10 8 7 12 12 Si 1.86796 * 119.99904 * 341.79880 * 10 8 7 13 13 H 1.48505 * 109.47538 * 95.40519 * 12 10 8 14 14 H 1.48500 * 109.47272 * 215.40850 * 12 10 8 15 15 H 1.48498 * 109.47095 * 335.40731 * 12 10 8 16 16 C 1.38878 * 120.01943 * 180.02562 * 3 2 1 17 17 O 1.35750 * 120.28651 * 359.95030 * 16 3 2 18 18 C 1.42899 * 116.99484 * 89.99942 * 17 16 3 19 19 H 1.09002 * 109.52611 * 30.13260 * 18 17 16 20 20 C 1.53181 * 109.56887 * 150.28459 * 18 17 16 21 21 C 1.53185 * 109.03559 * 176.91948 * 20 18 17 22 22 C 1.53090 * 109.16208 * 303.02001 * 21 20 18 23 23 O 1.42907 * 109.41564 * 57.61083 * 22 21 20 24 24 C 1.42914 * 114.09387 * 298.83954 * 23 22 21 25 25 H 1.08997 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47337 * 299.99737 * 1 2 3 27 27 H 1.09007 * 109.47338 * 59.99695 * 1 2 3 28 28 H 1.07999 * 119.72925 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.71059 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.99009 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00418 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.54322 * 296.78652 * 20 18 17 33 33 H 1.09001 * 109.54429 * 57.05608 * 20 18 17 34 34 H 1.09001 * 109.52132 * 62.92440 * 21 20 18 35 35 H 1.08998 * 109.51979 * 183.11707 * 21 20 18 36 36 H 1.09000 * 109.47716 * 177.58953 * 22 21 20 37 37 H 1.08997 * 109.48211 * 297.61493 * 22 21 20 38 38 H 1.08995 * 109.48170 * 301.17383 * 24 23 22 39 39 H 1.08999 * 109.47470 * 181.13860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 -0.0005 5 6 1.9102 3.6175 -0.0011 6 6 3.2717 3.7150 -0.0016 7 6 4.0613 2.5496 0.0047 8 6 5.4699 2.6446 0.0101 9 1 6.0613 1.8721 0.4790 10 6 6.0997 3.7393 -0.5922 11 7 7.3416 4.0248 -0.2946 12 14 5.1676 4.7933 -1.8208 13 1 4.5897 5.9710 -1.1248 14 1 6.0969 5.2533 -2.8838 15 1 4.0750 3.9935 -2.4306 16 6 3.4333 1.2851 -0.0005 17 8 4.1787 0.1506 0.0000 18 6 4.5344 -0.3924 -1.2731 19 1 4.6213 0.4138 -2.0016 20 6 5.8736 -1.1275 -1.1613 21 6 6.2055 -1.7695 -2.5119 22 6 5.0624 -2.7030 -2.9190 23 8 3.8413 -1.9627 -2.9743 24 6 3.4560 -1.3790 -1.7280 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2131 2.3142 -0.0005 29 1 1.3094 4.5149 -0.0011 30 1 3.7433 4.6867 -0.0025 31 1 7.7782 4.7839 -0.7118 32 1 6.6570 -0.4192 -0.8920 33 1 5.8019 -1.9018 -0.3974 34 1 6.3260 -0.9912 -3.2654 35 1 7.1296 -2.3411 -2.4263 36 1 5.2734 -3.1299 -3.8995 37 1 4.9690 -3.5044 -2.1861 38 1 3.3414 -2.1630 -0.9794 39 1 2.5097 -0.8521 -1.8506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258222225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:39 Heat of formation + Delta-G solvation = -127.071138 kcal Electronic energy + Delta-G solvation = -22762.266966 eV Core-core repulsion = 19441.419745 eV Total energy + Delta-G solvation = -3320.847222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21790 -40.14326 -38.67211 -37.57527 -35.42423 -34.21200 -32.08768 -31.44465 -30.10334 -28.06142 -26.83572 -25.99151 -24.38251 -23.05835 -22.27929 -21.29417 -19.77364 -18.76291 -17.80046 -17.52871 -17.33850 -16.85675 -16.62113 -16.35471 -15.95040 -15.78742 -15.50472 -15.08385 -14.58034 -14.34733 -14.24553 -13.80037 -13.69270 -13.46220 -13.27205 -13.01589 -12.67739 -12.46939 -12.36760 -12.15461 -11.98267 -11.87829 -11.60056 -11.56766 -11.40486 -11.15669 -10.90586 -10.09910 -9.48943 -8.97790 -8.84305 -6.55830 0.57740 0.79609 1.22484 1.36212 1.44941 2.07520 2.44438 2.57695 2.75530 3.14652 3.48064 3.85213 3.88575 3.94405 4.10188 4.20760 4.22706 4.44054 4.46350 4.48275 4.52099 4.58496 4.65240 4.70620 4.79006 4.83263 4.89575 4.92576 4.95353 5.00637 5.19032 5.22587 5.32111 5.57702 5.70302 5.86240 5.89944 6.14044 6.23301 6.48640 6.61897 6.71682 7.19179 8.09926 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.008974 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.658956 B = 3119.269421 C = 4650.928645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.142 3.858 4 C -0.304 4.304 5 C -0.047 4.047 6 C -0.269 4.269 7 C 0.085 3.915 8 C -0.454 4.454 9 H 0.056 0.944 10 C 0.051 3.949 11 N -0.835 5.835 12 Si 0.962 3.038 13 H -0.249 1.249 14 H -0.276 1.276 15 H -0.257 1.257 16 C -0.074 4.074 17 O -0.317 6.317 18 C 0.061 3.939 19 H 0.032 0.968 20 C -0.116 4.116 21 C -0.145 4.145 22 C 0.053 3.947 23 O -0.397 6.397 24 C 0.063 3.937 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.297 0.703 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -7.553 -4.839 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.097 3.903 4 C -0.324 4.324 5 C -0.065 4.065 6 C -0.288 4.288 7 C 0.081 3.919 8 C -0.483 4.483 9 H 0.074 0.926 10 C -0.165 4.165 11 N -0.460 5.460 12 Si 0.785 3.215 13 H -0.174 1.174 14 H -0.202 1.202 15 H -0.181 1.181 16 C -0.119 4.119 17 O -0.234 6.234 18 C 0.004 3.996 19 H 0.050 0.950 20 C -0.154 4.154 21 C -0.183 4.183 22 C -0.023 4.023 23 O -0.317 6.317 24 C -0.014 4.014 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.978 -7.715 -4.844 12.109 hybrid contribution 0.250 0.936 -0.002 0.969 sum -7.728 -6.778 -4.846 11.365 Atomic orbital electron populations 1.23259 0.77346 1.04915 1.01913 1.86068 1.22790 1.26831 1.88705 1.19287 0.90769 0.85081 0.95199 1.20831 0.99662 0.91094 1.20807 1.20608 0.93648 0.97600 0.94628 1.20806 0.94790 0.96688 1.16544 1.17924 0.93576 0.91000 0.89351 1.19218 0.91015 1.05680 1.32360 0.92577 1.26844 0.95638 0.96761 0.97282 1.69724 1.13829 1.25990 1.36477 0.85542 0.78705 0.79082 0.78173 1.17420 1.20203 1.18110 1.18101 0.86442 0.86218 1.21134 1.86004 1.70736 1.39047 1.27645 1.22870 0.95689 0.94978 0.86031 0.95010 1.21640 0.95094 0.99520 0.99148 1.22198 1.00702 0.99968 0.95416 1.22875 0.82628 0.92926 1.03842 1.87892 1.41707 1.69880 1.32175 1.22864 0.97248 0.95464 0.85858 0.86451 0.92150 0.92200 0.83854 0.84375 0.87765 0.89274 0.93026 0.90564 0.92065 0.87638 0.86120 0.91623 0.92101 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.33 -12.24 8.27 -79.81 -0.66 -12.90 16 3 C 0.14 6.15 6.57 22.54 0.15 6.29 16 4 C -0.30 -11.66 9.05 22.51 0.20 -11.46 16 5 C -0.05 -1.87 9.96 21.99 0.22 -1.65 16 6 C -0.27 -12.74 7.11 22.48 0.16 -12.58 16 7 C 0.08 4.50 5.11 -21.21 -0.11 4.39 16 8 C -0.45 -26.03 9.19 23.40 0.21 -25.82 16 9 H 0.06 3.56 7.90 -2.91 -0.02 3.54 16 10 C 0.05 2.74 5.40 85.24 0.46 3.20 16 11 N -0.84 -45.49 13.93 21.82 0.30 -45.19 16 12 Si 0.96 42.65 24.51 68.60 1.68 44.34 16 13 H -0.25 -10.21 6.71 99.48 0.67 -9.54 16 14 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.26 -11.84 6.86 99.48 0.68 -11.15 16 16 C -0.07 -3.70 5.61 23.15 0.13 -3.57 16 17 O -0.32 -15.69 8.86 -76.85 -0.68 -16.37 16 18 C 0.06 2.60 2.87 30.68 0.09 2.69 16 19 H 0.03 1.53 7.91 -2.39 -0.02 1.51 16 20 C -0.12 -4.24 5.68 30.72 0.17 -4.06 16 21 C -0.15 -4.03 6.14 30.69 0.19 -3.84 16 22 C 0.05 1.33 6.84 72.01 0.49 1.83 16 23 O -0.40 -13.21 10.77 -148.98 -1.60 -14.82 16 24 C 0.06 2.29 5.96 72.01 0.43 2.72 16 25 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.37 7.66 -2.39 -0.02 1.35 16 27 H 0.06 1.36 7.66 -2.38 -0.02 1.34 16 28 H 0.14 4.33 6.27 -2.91 -0.02 4.32 16 29 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.10 4.84 4.72 -2.91 -0.01 4.83 16 31 H 0.30 14.41 8.30 -92.71 -0.77 13.64 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 3.34 6.49 -2.39 -0.02 3.33 16 Total: -1.00 -65.66 312.40 3.94 -61.72 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.98 Total: 23.46 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 3.91 Total: -40.24 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.30 Total: -45.19 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -2.94 Total: -44.09 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.68 Total: 44.34 kcal Total: -65.66 3.94 -61.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258222225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.347 kcal (2) G-P(sol) polarization free energy of solvation -65.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds