Wall clock time and date at job start Mon Mar 30 2020 23:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36013 * 116.99515 * 2 1 4 4 C 1.38703 * 120.02110 * 359.97438 * 3 2 1 5 5 C 1.38770 * 120.53451 * 179.97438 * 4 3 2 6 6 C 1.36489 * 120.58124 * 359.75438 * 5 4 3 7 7 C 1.40769 * 120.02225 * 0.52099 * 6 5 4 8 8 C 1.41176 * 120.26365 * 179.73475 * 7 6 5 9 9 H 1.08011 * 119.99918 * 153.53115 * 8 7 6 10 10 C 1.39924 * 120.00449 * 333.25780 * 8 7 6 11 11 N 1.30871 * 120.00125 * 161.92880 * 10 8 7 12 12 Si 1.86797 * 119.99667 * 341.92690 * 10 8 7 13 13 H 1.48495 * 109.47316 * 95.52907 * 12 10 8 14 14 H 1.48501 * 109.47018 * 215.52811 * 12 10 8 15 15 H 1.48505 * 109.47271 * 335.52558 * 12 10 8 16 16 C 1.38879 * 120.01726 * 179.97438 * 3 2 1 17 17 O 1.35736 * 120.28572 * 0.02562 * 16 3 2 18 18 C 1.42903 * 116.99958 * 276.67293 * 17 16 3 19 19 C 1.53177 * 109.54053 * 271.33902 * 18 17 16 20 20 C 1.53111 * 109.15898 * 183.23993 * 19 18 17 21 21 O 1.42898 * 109.47994 * 57.47855 * 20 19 18 22 22 C 1.42904 * 114.10015 * 298.88318 * 21 20 19 23 23 C 1.53087 * 109.41081 * 61.16545 * 22 21 20 24 24 H 1.09005 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47166 * 299.99580 * 1 2 3 26 26 H 1.09001 * 109.46916 * 60.00165 * 1 2 3 27 27 H 1.07995 * 119.73484 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.70984 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.99086 * 180.25992 * 6 5 4 30 30 H 0.97003 * 119.99976 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.54554 * 31.51918 * 18 17 16 32 32 H 1.09000 * 109.52770 * 303.06372 * 19 18 17 33 33 H 1.09007 * 109.52034 * 63.25058 * 19 18 17 34 34 H 1.09001 * 109.40515 * 297.49951 * 20 19 18 35 35 H 1.09003 * 109.48970 * 177.51354 * 20 19 18 36 36 H 1.08996 * 109.48299 * 301.18398 * 22 21 20 37 37 H 1.09000 * 109.49275 * 181.15107 * 22 21 20 38 38 H 1.09008 * 109.52745 * 182.48435 * 23 22 21 39 39 H 1.09005 * 109.52472 * 62.29623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2913 2.3754 -0.0005 5 6 1.9101 3.6175 0.0000 6 6 3.2715 3.7151 0.0061 7 6 4.0612 2.5498 0.0008 8 6 5.4698 2.6448 0.0014 9 1 6.0649 1.8438 0.4148 10 6 6.0951 3.7741 -0.5385 11 7 7.3402 4.0402 -0.2357 12 14 5.1527 4.9017 -1.6917 13 1 4.5851 6.0364 -0.9201 14 1 6.0720 5.4232 -2.7348 15 1 4.0519 4.1420 -2.3369 16 6 3.4333 1.2852 0.0005 17 8 4.1787 0.1508 0.0005 18 6 4.4108 -0.4730 1.2651 19 6 5.6739 0.1146 1.9021 20 6 5.9597 -0.6154 3.2172 21 8 6.0981 -2.0152 2.9649 22 6 4.9300 -2.6270 2.4141 23 6 4.6041 -1.9794 1.0658 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2131 2.3142 -0.0005 28 1 1.3092 4.5149 0.0000 29 1 3.7431 4.6867 0.0107 30 1 7.7738 4.8228 -0.6104 31 1 3.5571 -0.2984 1.9200 32 1 6.5177 -0.0147 1.2243 33 1 5.5227 1.1761 2.0986 34 1 5.1342 -0.4507 3.9097 35 1 6.8821 -0.2316 3.6532 36 1 4.0911 -2.4886 3.0960 37 1 5.1105 -3.6925 2.2714 38 1 3.6886 -2.4141 0.6646 39 1 5.4256 -2.1523 0.3705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258262007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:18 Heat of formation + Delta-G solvation = -124.477081 kcal Electronic energy + Delta-G solvation = -22667.535263 eV Core-core repulsion = 19346.800528 eV Total energy + Delta-G solvation = -3320.734735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20063 -40.16290 -38.66680 -37.62733 -35.41349 -33.56999 -32.22799 -31.84950 -30.35138 -28.07933 -26.87300 -25.41885 -24.60193 -23.04982 -22.36857 -21.30009 -19.72351 -18.83664 -17.62758 -17.41437 -17.26218 -16.91661 -16.72746 -16.43996 -15.83216 -15.75222 -15.34129 -15.02036 -14.94373 -14.44595 -14.24109 -14.00232 -13.46217 -13.34977 -13.24197 -13.04999 -12.52107 -12.39687 -12.36651 -12.25968 -12.07963 -11.69147 -11.55977 -11.49405 -11.30869 -11.09952 -10.69063 -10.34889 -9.47431 -8.94755 -8.81827 -6.49645 0.61576 0.80878 1.24706 1.39481 1.48626 2.10546 2.51410 2.57814 2.85264 3.02132 3.50403 3.83342 3.92403 4.01701 4.14668 4.21865 4.25003 4.33336 4.45555 4.46374 4.52428 4.54462 4.62906 4.71219 4.74465 4.77204 4.88021 4.91492 4.99042 5.07042 5.20694 5.23782 5.34180 5.60073 5.72130 5.88121 5.92618 6.19131 6.29759 6.50924 6.64411 6.75870 7.24480 8.10769 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.008326 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.843076 B = 3362.078263 C = 4990.965284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.335 6.335 3 C 0.136 3.864 4 C -0.311 4.311 5 C -0.047 4.047 6 C -0.275 4.275 7 C 0.086 3.914 8 C -0.456 4.456 9 H 0.083 0.917 10 C 0.049 3.951 11 N -0.832 5.832 12 Si 0.965 3.035 13 H -0.253 1.253 14 H -0.281 1.281 15 H -0.257 1.257 16 C -0.070 4.070 17 O -0.322 6.322 18 C 0.092 3.908 19 C -0.169 4.169 20 C 0.072 3.928 21 O -0.397 6.397 22 C 0.068 3.932 23 C -0.143 4.143 24 H 0.118 0.882 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.296 0.704 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -6.379 3.651 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.249 6.249 3 C 0.090 3.910 4 C -0.331 4.331 5 C -0.065 4.065 6 C -0.294 4.294 7 C 0.083 3.917 8 C -0.484 4.484 9 H 0.101 0.899 10 C -0.168 4.168 11 N -0.457 5.457 12 Si 0.789 3.211 13 H -0.179 1.179 14 H -0.208 1.208 15 H -0.181 1.181 16 C -0.116 4.116 17 O -0.239 6.239 18 C 0.036 3.964 19 C -0.208 4.208 20 C -0.005 4.005 21 O -0.316 6.316 22 C -0.009 4.009 23 C -0.181 4.181 24 H 0.136 0.864 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.180 -6.655 3.549 11.881 hybrid contribution -0.248 1.178 -0.460 1.289 sum -9.428 -5.477 3.089 11.333 Atomic orbital electron populations 1.23239 0.77322 1.04871 1.01795 1.86055 1.22845 1.27044 1.88913 1.19372 0.91029 0.84954 0.95608 1.20762 0.99478 0.91146 1.21665 1.20561 0.93714 0.97452 0.94769 1.20729 0.94737 0.96654 1.17266 1.17906 0.93675 0.90741 0.89414 1.19705 0.91192 1.03584 1.33933 0.89860 1.26874 0.95686 0.97824 0.96396 1.69716 1.13713 1.26034 1.36203 0.85521 0.78620 0.78554 0.78424 1.17860 1.20760 1.18077 1.18244 0.86253 0.85848 1.21216 1.86028 1.71240 1.37668 1.28971 1.22340 0.95157 0.93317 0.85595 1.22752 0.98800 1.00679 0.98519 1.22576 1.02896 0.80532 0.94491 1.87869 1.38412 1.22068 1.83229 1.22731 0.88025 0.98303 0.91798 1.22237 1.03128 0.92853 0.99884 0.86379 0.92177 0.92437 0.84199 0.84682 0.87897 0.89339 0.93647 0.92987 0.91976 0.91911 0.87767 0.91752 0.85744 0.89440 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 16 2 O -0.33 -12.59 10.28 -79.80 -0.82 -13.41 16 3 C 0.14 5.89 6.69 22.53 0.15 6.04 16 4 C -0.31 -11.99 9.05 22.51 0.20 -11.79 16 5 C -0.05 -1.88 9.96 21.99 0.22 -1.66 16 6 C -0.27 -12.92 7.06 22.48 0.16 -12.76 16 7 C 0.09 4.49 5.20 -21.21 -0.11 4.38 16 8 C -0.46 -25.43 8.51 23.40 0.20 -25.23 16 9 H 0.08 4.91 4.81 -2.90 -0.01 4.90 16 10 C 0.05 2.60 5.42 85.24 0.46 3.06 16 11 N -0.83 -44.76 13.93 21.83 0.30 -44.46 16 12 Si 0.96 42.82 24.42 68.60 1.68 44.49 16 13 H -0.25 -10.40 6.69 99.48 0.67 -9.73 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.26 -11.89 6.74 99.48 0.67 -11.22 16 16 C -0.07 -3.49 5.60 23.15 0.13 -3.36 16 17 O -0.32 -15.81 8.88 -76.70 -0.68 -16.49 16 18 C 0.09 3.72 2.75 30.71 0.08 3.80 16 19 C -0.17 -6.91 4.20 30.69 0.13 -6.79 16 20 C 0.07 2.30 6.84 72.02 0.49 2.79 16 21 O -0.40 -12.43 10.77 -148.98 -1.60 -14.03 16 22 C 0.07 1.76 6.84 72.01 0.49 2.25 16 23 C -0.14 -4.64 5.79 30.68 0.18 -4.46 16 24 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 25 H 0.06 1.35 7.66 -2.39 -0.02 1.33 16 26 H 0.06 1.33 7.66 -2.39 -0.02 1.32 16 27 H 0.14 4.30 6.27 -2.91 -0.02 4.29 16 28 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.10 4.75 4.30 -2.91 -0.01 4.74 16 30 H 0.30 14.29 8.30 -92.71 -0.77 13.52 16 31 H 0.05 1.83 7.92 -2.39 -0.02 1.81 16 32 H 0.05 2.35 7.73 -2.39 -0.02 2.33 16 33 H 0.06 2.87 6.67 -2.38 -0.02 2.86 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -64.62 308.91 3.75 -60.86 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.98 Total: 25.09 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 3.90 Total: -42.05 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.30 Total: -44.46 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -3.11 Total: -43.94 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.68 Total: 44.49 kcal Total: -64.62 3.75 -60.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258262007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.614 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds