Wall clock time and date at job start Tue Mar 31 2020 00:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99523 * 2 1 4 4 H 1.48503 * 109.47227 * 270.00014 * 3 2 1 5 5 H 1.48499 * 109.47616 * 30.00161 * 3 2 1 6 6 H 1.48507 * 109.46987 * 150.00102 * 3 2 1 7 7 C 1.37875 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00249 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47443 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47657 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47400 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99957 * 179.97438 * 12 11 10 14 14 O 1.21495 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.48327 * 120.00269 * 179.97438 * 13 12 11 16 16 N 1.31504 * 127.14956 * 359.97438 * 15 13 12 17 17 O 1.21426 * 111.51956 * 179.97438 * 16 15 13 18 18 C 1.33187 * 111.57724 * 359.95397 * 17 16 15 19 19 C 1.35378 * 106.63354 * 0.07942 * 18 17 16 20 20 C 1.50063 * 124.94163 * 179.81063 * 19 18 17 21 21 C 1.53546 * 108.23164 * 343.97132 * 20 19 18 22 22 C 1.53109 * 109.50983 * 49.17558 * 21 20 19 23 23 C 1.50601 * 129.60591 * 180.22621 * 18 17 16 24 24 H 0.96995 * 120.00653 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46961 * 60.00082 * 9 7 2 26 26 H 1.08997 * 109.47486 * 300.00476 * 9 7 2 27 27 H 1.09004 * 109.46992 * 60.00080 * 10 9 7 28 28 H 1.08996 * 109.47597 * 300.00366 * 10 9 7 29 29 H 1.09004 * 109.46976 * 59.99920 * 11 10 9 30 30 H 1.08996 * 109.46793 * 300.00708 * 11 10 9 31 31 H 0.97000 * 120.00346 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.70679 * 103.65729 * 20 19 18 33 33 H 1.08999 * 109.70927 * 224.28503 * 20 19 18 34 34 H 1.08997 * 109.46640 * 289.16177 * 21 20 19 35 35 H 1.09002 * 109.46030 * 169.18899 * 21 20 19 36 36 H 1.09000 * 109.42935 * 170.05859 * 22 21 20 37 37 H 1.08995 * 109.38953 * 50.19300 * 22 21 20 38 38 H 1.08995 * 109.69311 * 282.87341 * 23 18 17 39 39 H 1.08999 * 109.69529 * 43.42645 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5517 -2.6364 0.0001 12 7 6.0400 -4.0175 -0.0004 13 6 7.3652 -4.2637 -0.0009 14 8 8.1546 -3.3402 -0.0006 15 6 7.8597 -5.6621 -0.0009 16 7 7.1363 -6.7603 0.0002 17 8 7.8346 -7.7537 -0.0006 18 6 9.1295 -7.4421 -0.0033 19 6 9.2028 -6.0903 -0.0024 20 6 10.4777 -5.2987 -0.0006 21 6 11.6248 -6.2364 0.4028 22 6 11.5552 -7.5179 -0.4321 23 6 10.3344 -8.3456 -0.0096 24 1 -0.4851 0.8399 -0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 3.6580 -3.1504 -0.8897 28 1 3.6587 -3.1501 0.8902 29 1 5.9150 -2.1224 0.8901 30 1 5.9150 -2.1225 -0.8898 31 1 5.4098 -4.7549 -0.0010 32 1 10.6632 -4.8984 -0.9973 33 1 10.4018 -4.4812 0.7163 34 1 11.5351 -6.4862 1.4599 35 1 12.5789 -5.7395 0.2268 36 1 12.4616 -8.1026 -0.2750 37 1 11.4698 -7.2583 -1.4872 38 1 10.4939 -8.7521 0.9890 39 1 10.1792 -9.1600 -0.7173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264029885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:45 Heat of formation + Delta-G solvation = -2.605706 kcal Electronic energy + Delta-G solvation = -20780.173573 eV Core-core repulsion = 17497.016329 eV Total energy + Delta-G solvation = -3283.157244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.31837 -39.56751 -38.02183 -35.63294 -34.16282 -33.30499 -31.51155 -31.31228 -30.53196 -27.53358 -25.19712 -24.27881 -23.12043 -22.45918 -20.92258 -20.37577 -19.51338 -18.07628 -17.85360 -16.83404 -16.58171 -15.66804 -15.46417 -15.40614 -14.41546 -14.36554 -14.25091 -14.01227 -13.92428 -13.51133 -13.41719 -12.75395 -12.71753 -12.10337 -11.97127 -11.70706 -11.43148 -11.36687 -11.13420 -11.07094 -10.91496 -10.46307 -10.41532 -10.04397 -9.84880 -9.69347 -9.37818 -9.23868 -8.99145 -8.56015 -6.06519 -4.05454 0.92098 1.44502 2.59009 2.99586 3.11141 3.30817 3.38345 3.42324 3.80897 4.20060 4.31108 4.38454 4.43895 4.60430 4.68588 4.82607 5.00116 5.06421 5.17579 5.27227 5.32010 5.38531 5.49956 5.52518 5.58661 5.59935 5.68273 5.85229 5.95702 5.97045 6.22756 6.40591 6.61368 6.75138 7.20770 7.34267 7.41460 7.75030 7.80465 8.09135 8.50041 8.97400 9.55364 11.06729 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042745 B = 0.002855 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.885781 B = 9805.997379 C =10396.564576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.708 5.708 13 C 0.593 3.407 14 O -0.524 6.524 15 C -0.014 4.014 16 N -0.336 5.336 17 O 0.127 5.873 18 C -0.041 4.041 19 C -0.152 4.152 20 C -0.046 4.046 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.034 4.034 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.406 0.594 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.221 -17.752 0.000 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.359 5.359 13 C 0.376 3.624 14 O -0.399 6.399 15 C -0.172 4.172 16 N -0.038 5.038 17 O 0.054 5.946 18 C -0.105 4.105 19 C -0.157 4.157 20 C -0.083 4.083 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.264 -17.097 0.006 29.682 hybrid contribution 0.459 0.859 -0.029 0.975 sum 24.723 -16.238 -0.022 29.579 Atomic orbital electron populations 1.69911 1.06316 1.26973 1.50953 1.25031 0.94757 0.99241 0.94462 0.86769 0.80396 0.83508 0.78586 1.20233 1.21349 1.18891 1.21090 0.89266 0.94561 1.51133 0.90978 1.19498 0.97341 0.91272 0.96704 1.21728 0.90278 1.01230 1.02002 1.21776 0.96504 0.80254 1.02322 1.46074 1.06015 1.10807 1.72990 1.16876 0.83038 0.84975 0.77478 1.90780 1.55537 1.43547 1.50065 1.23131 0.91955 0.94760 1.07377 1.74588 1.18465 0.93615 1.17166 1.84681 1.14925 1.29180 1.65797 1.24139 0.86394 0.95428 1.04564 1.20670 0.95324 0.93274 1.06476 1.20012 0.87933 0.96894 1.03456 1.21726 0.98607 0.95528 1.00284 1.21658 0.96670 0.96449 1.00890 1.20264 0.86971 0.96043 1.03955 0.92677 0.96238 0.96684 0.91954 0.91933 0.91281 0.91299 0.75882 0.89808 0.89154 0.91326 0.90539 0.90004 0.90972 0.88688 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.89 9.66 -34.45 -0.33 -15.23 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.11 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.71 -10.99 5.55 -61.10 -0.34 -11.33 16 13 C 0.59 9.51 7.85 -12.11 -0.10 9.42 16 14 O -0.52 -9.51 16.09 5.37 0.09 -9.42 16 15 C -0.01 -0.20 7.19 -82.82 -0.60 -0.79 16 16 N -0.34 -4.51 11.89 33.29 0.40 -4.12 16 17 O 0.13 1.43 11.18 19.20 0.21 1.65 16 18 C -0.04 -0.38 7.38 -35.38 -0.26 -0.64 16 19 C -0.15 -1.74 6.04 -104.91 -0.63 -2.37 16 20 C -0.05 -0.43 5.66 -27.91 -0.16 -0.59 16 21 C -0.12 -0.73 5.92 -26.39 -0.16 -0.89 16 22 C -0.12 -0.53 5.88 -26.45 -0.16 -0.69 16 23 C -0.03 -0.17 6.31 -27.71 -0.17 -0.35 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 26 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.41 5.75 8.25 -40.82 -0.34 5.41 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.97 7.84 -51.93 -0.41 0.57 16 34 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -33.05 325.89 -7.31 -40.36 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.74 Total: -0.99 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.94 Total: -11.05 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.83 Total: -42.64 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.30 Total: -7.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.05 -7.31 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264029885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.757 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds