Wall clock time and date at job start Tue Mar 31 2020 00:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99523 * 2 1 4 4 H 1.48503 * 109.47227 * 270.00014 * 3 2 1 5 5 H 1.48499 * 109.47616 * 30.00161 * 3 2 1 6 6 H 1.48507 * 109.46987 * 150.00102 * 3 2 1 7 7 C 1.37875 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00249 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47443 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47657 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47400 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99957 * 179.97438 * 12 11 10 14 14 O 1.21495 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.48327 * 120.00269 * 179.97438 * 13 12 11 16 16 N 1.31504 * 127.14956 * 359.97438 * 15 13 12 17 17 O 1.21426 * 111.51956 * 179.97438 * 16 15 13 18 18 C 1.33187 * 111.57724 * 359.95397 * 17 16 15 19 19 C 1.35378 * 106.63354 * 0.07942 * 18 17 16 20 20 C 1.50063 * 124.94163 * 179.81063 * 19 18 17 21 21 C 1.53546 * 108.23164 * 343.97132 * 20 19 18 22 22 C 1.53109 * 109.50983 * 49.17558 * 21 20 19 23 23 C 1.50601 * 129.60591 * 180.22621 * 18 17 16 24 24 H 0.96995 * 120.00653 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46961 * 60.00082 * 9 7 2 26 26 H 1.08997 * 109.47486 * 300.00476 * 9 7 2 27 27 H 1.09004 * 109.46992 * 60.00080 * 10 9 7 28 28 H 1.08996 * 109.47597 * 300.00366 * 10 9 7 29 29 H 1.09004 * 109.46976 * 59.99920 * 11 10 9 30 30 H 1.08996 * 109.46793 * 300.00708 * 11 10 9 31 31 H 0.97000 * 120.00346 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.70679 * 103.65729 * 20 19 18 33 33 H 1.08999 * 109.70927 * 224.28503 * 20 19 18 34 34 H 1.08997 * 109.46640 * 289.16177 * 21 20 19 35 35 H 1.09002 * 109.46030 * 169.18899 * 21 20 19 36 36 H 1.09000 * 109.42935 * 170.05859 * 22 21 20 37 37 H 1.08995 * 109.38953 * 50.19300 * 22 21 20 38 38 H 1.08995 * 109.69311 * 282.87341 * 23 18 17 39 39 H 1.08999 * 109.69529 * 43.42645 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5517 -2.6364 0.0001 12 7 6.0400 -4.0175 -0.0004 13 6 7.3652 -4.2637 -0.0009 14 8 8.1546 -3.3402 -0.0006 15 6 7.8597 -5.6621 -0.0009 16 7 7.1363 -6.7603 0.0002 17 8 7.8346 -7.7537 -0.0006 18 6 9.1295 -7.4421 -0.0033 19 6 9.2028 -6.0903 -0.0024 20 6 10.4777 -5.2987 -0.0006 21 6 11.6248 -6.2364 0.4028 22 6 11.5552 -7.5179 -0.4321 23 6 10.3344 -8.3456 -0.0096 24 1 -0.4851 0.8399 -0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 3.6580 -3.1504 -0.8897 28 1 3.6587 -3.1501 0.8902 29 1 5.9150 -2.1224 0.8901 30 1 5.9150 -2.1225 -0.8898 31 1 5.4098 -4.7549 -0.0010 32 1 10.6632 -4.8984 -0.9973 33 1 10.4018 -4.4812 0.7163 34 1 11.5351 -6.4862 1.4599 35 1 12.5789 -5.7395 0.2268 36 1 12.4616 -8.1026 -0.2750 37 1 11.4698 -7.2583 -1.4872 38 1 10.4939 -8.7521 0.9890 39 1 10.1792 -9.1600 -0.7173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264029885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:45 Heat of formation + Delta-G solvation = -24.420760 kcal Electronic energy + Delta-G solvation = -20781.119545 eV Core-core repulsion = 17497.016329 eV Total energy + Delta-G solvation = -3284.103216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.24287 -40.84855 -38.61551 -37.14239 -35.34666 -34.94569 -33.32841 -32.00979 -31.22871 -29.26109 -26.33956 -25.20508 -24.03132 -23.70914 -22.36695 -21.58440 -20.46264 -19.11668 -18.97072 -18.60206 -17.69451 -17.03976 -16.85104 -16.24450 -16.01223 -15.57175 -15.15087 -14.87776 -14.80494 -14.77696 -14.25949 -14.18817 -13.87220 -13.73678 -13.26103 -12.82055 -12.75681 -12.53141 -12.08628 -11.90327 -11.85718 -11.82710 -11.66098 -11.62816 -11.38809 -11.34742 -11.29449 -10.78632 -10.32288 -10.14232 -8.31578 -6.36330 -0.06065 0.58567 1.35867 1.37404 1.49480 1.71501 1.92514 1.94906 2.34743 2.79416 3.03868 3.46298 3.62692 3.90015 3.95409 3.99846 4.10091 4.10280 4.23144 4.36006 4.41095 4.48116 4.58174 4.76111 4.79804 4.88724 4.93493 4.96544 5.01185 5.14265 5.18859 5.19692 5.33866 5.40071 5.44336 5.49505 5.61482 6.18472 6.24300 6.71437 6.79188 6.95078 7.28446 8.85021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042745 B = 0.002855 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.885781 B = 9805.997379 C =10396.564576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.126 3.874 12 N -0.705 5.705 13 C 0.593 3.407 14 O -0.550 6.550 15 C -0.041 4.041 16 N -0.355 5.355 17 O 0.134 5.866 18 C -0.020 4.020 19 C -0.173 4.173 20 C -0.046 4.046 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.035 4.035 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.413 0.587 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.301 -18.854 -0.001 34.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.048 4.048 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.356 5.356 13 C 0.378 3.622 14 O -0.427 6.427 15 C -0.197 4.197 16 N -0.056 5.056 17 O 0.059 5.941 18 C -0.085 4.085 19 C -0.178 4.178 20 C -0.084 4.084 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 27.341 -18.217 0.004 32.854 hybrid contribution -0.526 1.062 -0.029 1.186 sum 26.814 -17.155 -0.025 31.832 Atomic orbital electron populations 1.70062 1.08300 1.28235 1.52538 1.26023 0.95640 1.03591 0.94073 0.85651 0.79530 0.78182 0.79266 1.19127 1.20962 1.16916 1.21448 0.91913 0.93254 1.50570 0.94736 1.19447 0.94079 0.94126 0.97120 1.21503 0.91822 0.98620 1.02076 1.21486 0.94633 0.81188 1.02353 1.45957 1.06284 1.10375 1.72974 1.17124 0.82682 0.85799 0.76634 1.90753 1.56072 1.44633 1.51276 1.23014 0.93438 0.93860 1.09397 1.74571 1.19230 0.93810 1.17997 1.84648 1.15970 1.28420 1.65027 1.24964 0.86419 0.95497 1.01610 1.20985 0.94913 0.94508 1.07439 1.20058 0.88679 0.97070 1.02591 1.21736 0.97495 0.95704 1.00750 1.21701 0.97589 0.95811 1.00223 1.20636 0.84720 0.95851 1.06021 0.92438 0.95717 0.95838 0.91930 0.91954 0.91320 0.91262 0.75123 0.90404 0.91350 0.90961 0.89143 0.86978 0.91379 0.86385 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 9 C -0.01 -0.45 4.04 29.84 0.12 -0.33 16 10 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 11 C 0.13 4.24 5.67 86.38 0.49 4.73 16 12 N -0.70 -21.88 5.55 -465.51 -2.59 -24.46 16 13 C 0.59 19.24 7.85 86.93 0.68 19.92 16 14 O -0.55 -20.27 16.09 -3.70 -0.06 -20.33 16 15 C -0.04 -1.14 7.19 42.55 0.31 -0.83 16 16 N -0.35 -9.40 11.89 -48.95 -0.58 -9.98 16 17 O 0.13 2.84 11.18 78.72 0.88 3.72 16 18 C -0.02 -0.34 7.38 24.99 0.18 -0.15 16 19 C -0.17 -3.82 6.04 -20.05 -0.12 -3.94 16 20 C -0.05 -0.85 5.66 29.83 0.17 -0.68 16 21 C -0.12 -1.12 5.92 30.81 0.18 -0.94 16 22 C -0.12 -0.60 5.88 30.77 0.18 -0.42 16 23 C -0.03 -0.21 6.31 29.96 0.19 -0.02 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 26 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.41 11.71 8.25 -92.71 -0.76 10.94 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 34 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.07 0.44 8.12 -2.39 -0.02 0.43 16 38 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -73.36 325.89 3.33 -70.03 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.24 Total: 10.82 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 3.25 Total: -16.46 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -2.87 Total: -94.37 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.82 Total: -16.61 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -73.36 3.33 -70.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264029885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.612 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds