Wall clock time and date at job start Mon Mar 30 2020 23:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47164 * 2 1 4 4 C 1.42895 * 113.99937 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47559 * 329.99530 * 4 3 2 6 6 C 1.53004 * 109.47219 * 90.00174 * 4 3 2 7 7 C 1.50700 * 109.46761 * 209.99934 * 4 3 2 8 8 O 1.20831 * 120.00498 * 354.99712 * 7 4 3 9 9 O 1.34228 * 120.00136 * 174.99975 * 7 4 3 10 10 C 1.45202 * 117.00452 * 179.97438 * 9 7 4 11 11 C 1.50697 * 109.47494 * 180.02562 * 10 9 7 12 12 C 1.38640 * 119.75069 * 269.73304 * 11 10 9 13 13 C 1.37612 * 120.25028 * 179.71986 * 12 11 10 14 14 C 1.40720 * 119.74128 * 0.57115 * 13 12 11 15 15 C 1.41399 * 120.24135 * 179.68295 * 14 13 12 16 16 H 1.07999 * 120.00138 * 155.31172 * 15 14 13 17 17 C 1.39941 * 120.00051 * 335.30917 * 15 14 13 18 18 N 1.30829 * 120.00023 * 342.22810 * 17 15 14 19 19 Si 1.86805 * 120.00099 * 162.23786 * 17 15 14 20 20 H 1.48492 * 109.47386 * 94.66189 * 19 17 15 21 21 H 1.48502 * 109.46886 * 214.66292 * 19 17 15 22 22 H 1.48500 * 109.46878 * 334.66019 * 19 17 15 23 23 C 1.40717 * 119.51555 * 359.70127 * 14 13 12 24 24 C 1.37617 * 119.74076 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46949 * 300.00113 * 1 2 3 26 26 H 1.08997 * 109.47124 * 60.00449 * 1 2 3 27 27 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47472 * 239.99916 * 2 1 3 29 29 H 1.08997 * 109.47857 * 119.99685 * 2 1 3 30 30 H 1.09004 * 109.46609 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.46579 * 299.99477 * 6 4 3 32 32 H 1.08994 * 109.47432 * 59.99774 * 6 4 3 33 33 H 1.08993 * 109.47438 * 300.00457 * 10 9 7 34 34 H 1.09002 * 109.46919 * 60.00051 * 10 9 7 35 35 H 1.08002 * 119.86998 * 359.97438 * 12 11 10 36 36 H 1.08005 * 120.13058 * 180.27396 * 13 12 11 37 37 H 0.96999 * 119.99683 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.12894 * 179.97438 * 23 14 13 39 39 H 1.07998 * 119.87412 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9387 1.5007 -1.4433 7 6 3.8347 2.7263 0.7098 8 8 2.9896 3.5018 1.0898 9 8 5.1333 2.9928 0.9205 10 6 5.4488 4.2308 1.6105 11 6 6.9434 4.3587 1.7549 12 6 7.5722 3.8469 2.8795 13 6 8.9371 3.9528 3.0192 14 6 9.6933 4.5943 2.0207 15 6 11.0955 4.7150 2.1567 16 1 11.7156 4.8257 1.2794 17 6 11.6799 4.6911 3.4280 18 7 10.9461 4.9067 4.4894 19 14 13.5079 4.3517 3.6095 20 1 14.2462 5.6384 3.6752 21 1 13.7466 3.5798 4.8555 22 1 13.9839 3.5669 2.4422 23 6 9.0438 5.1150 0.8863 24 6 7.6784 4.9926 0.7650 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8899 30 1 5.0253 1.5872 -1.4436 31 1 3.6466 0.5848 -1.9571 32 1 3.5060 2.3592 -1.9568 33 1 5.0661 5.0745 1.0363 34 1 4.9872 4.2242 2.5979 35 1 6.9890 3.3595 3.6469 36 1 9.4255 3.5495 3.8940 37 1 11.3511 4.8898 5.3706 38 1 9.6144 5.6096 0.1142 39 1 7.1777 5.3911 -0.1050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271893514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:42 Heat of formation + Delta-G solvation = -126.227939 kcal Electronic energy + Delta-G solvation = -20673.287626 eV Core-core repulsion = 17352.476968 eV Total energy + Delta-G solvation = -3320.810658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27691 -38.34395 -37.58133 -35.93301 -33.89042 -32.70803 -30.87717 -30.24902 -29.38234 -27.28136 -25.00803 -23.64582 -22.91800 -21.10241 -20.71211 -20.05108 -17.53832 -17.40606 -17.12591 -16.40037 -15.95725 -15.66815 -15.29851 -14.56434 -14.01619 -13.88815 -13.60610 -13.43093 -12.94013 -12.80869 -12.56929 -12.31625 -12.21093 -12.10298 -12.03946 -11.60445 -11.56378 -11.30301 -11.22994 -11.12548 -10.63825 -10.62863 -10.22665 -10.14826 -9.82202 -9.66363 -9.48245 -9.22460 -7.57605 -7.46909 -6.88537 -4.47659 2.28814 2.42086 2.80991 2.99300 3.01672 3.05619 3.15723 3.82010 3.84786 4.48737 4.67746 4.72908 4.87224 4.95876 5.01895 5.09199 5.32490 5.50915 5.56612 5.60586 5.64553 5.67214 5.70580 5.87287 5.96606 6.07975 6.24424 6.30344 6.82325 6.85880 6.86925 6.96275 7.16786 7.24971 7.50367 7.72546 7.94462 7.99518 8.08307 8.17831 8.52414 8.77176 8.85306 10.05627 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038449 B = 0.002900 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.064495 B = 9653.805473 C = 9693.909816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.097 3.903 5 H 0.097 0.903 6 C -0.168 4.168 7 C 0.455 3.545 8 O -0.500 6.500 9 O -0.348 6.348 10 C 0.136 3.864 11 C -0.235 4.235 12 C -0.075 4.075 13 C -0.171 4.171 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.910 3.090 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.230 4.230 24 C -0.063 4.063 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 -9.097 -6.298 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.038 3.962 5 H 0.115 0.885 6 C -0.225 4.225 7 C 0.296 3.704 8 O -0.388 6.388 9 O -0.265 6.265 10 C 0.065 3.935 11 C -0.237 4.237 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.250 4.250 24 C -0.081 4.081 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.290 -8.631 -5.894 15.385 hybrid contribution 0.894 -0.176 0.313 0.963 sum -10.396 -8.807 -5.581 14.724 Atomic orbital electron populations 1.21732 0.93368 1.02229 1.03445 1.22614 0.95930 0.83261 1.00369 1.88019 1.18435 1.26742 1.94982 1.21410 0.83153 0.94738 0.96945 0.88540 1.22200 1.02970 1.03465 0.93912 1.23294 0.82014 0.87691 0.77405 1.90641 1.52230 1.48449 1.47445 1.86678 1.25168 1.44152 1.70534 1.21748 0.94646 0.82020 0.95110 1.18653 0.91319 1.14248 0.99447 1.20541 0.94997 0.98175 0.95655 1.21293 0.92282 1.03750 1.01656 1.17693 0.93250 0.87010 0.90429 1.19673 0.92345 1.43396 0.93072 0.90155 1.25978 1.00924 0.92027 0.95452 1.69827 1.38322 1.33145 0.99754 0.86277 0.81924 0.79450 0.79003 1.19454 1.19919 1.18297 1.20953 0.93330 1.09013 1.01696 1.20389 0.94121 0.97712 0.95912 0.91647 0.91723 0.90957 0.92950 0.93022 0.89660 0.91109 0.91217 0.91995 0.91947 0.89313 0.86276 0.90631 0.88685 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.05 0.50 6.47 37.16 0.24 0.74 16 3 O -0.36 -4.81 9.53 -55.13 -0.53 -5.33 16 4 C 0.10 1.23 3.24 -27.88 -0.09 1.14 16 5 H 0.10 1.02 7.79 -51.93 -0.40 0.61 16 6 C -0.17 -1.77 9.50 37.16 0.35 -1.42 16 7 C 0.45 7.70 7.29 36.01 0.26 7.96 16 8 O -0.50 -9.94 16.26 -25.47 -0.41 -10.35 16 9 O -0.35 -6.38 10.20 -39.25 -0.40 -6.78 16 10 C 0.14 2.64 5.58 36.00 0.20 2.85 16 11 C -0.24 -5.19 5.54 -104.33 -0.58 -5.77 16 12 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 13 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 14 C 0.12 3.10 5.57 -106.82 -0.60 2.51 16 15 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 17 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.79 -19.75 10.97 55.55 0.61 -19.14 16 19 Si 0.91 18.01 29.60 -169.99 -5.03 12.98 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 23 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 24 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 29 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.11 6.18 -52.48 -0.32 2.79 16 37 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -29.29 338.38 -8.14 -37.43 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.74 Total: 3.77 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -1.74 Total: -17.68 kcal Atomic # 7 Polarization: -19.75 SS G_CDS: 0.61 Total: -19.14 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.34 Total: -22.46 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.29 -8.14 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271893514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.801 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds