Wall clock time and date at job start Mon Mar 30 2020 23:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47164 * 2 1 4 4 C 1.42895 * 113.99937 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47559 * 329.99530 * 4 3 2 6 6 C 1.53004 * 109.47219 * 90.00174 * 4 3 2 7 7 C 1.50700 * 109.46761 * 209.99934 * 4 3 2 8 8 O 1.20831 * 120.00498 * 354.99712 * 7 4 3 9 9 O 1.34228 * 120.00136 * 174.99975 * 7 4 3 10 10 C 1.45202 * 117.00452 * 179.97438 * 9 7 4 11 11 C 1.50697 * 109.47494 * 180.02562 * 10 9 7 12 12 C 1.38640 * 119.75069 * 269.73304 * 11 10 9 13 13 C 1.37612 * 120.25028 * 179.71986 * 12 11 10 14 14 C 1.40720 * 119.74128 * 0.57115 * 13 12 11 15 15 C 1.41399 * 120.24135 * 179.68295 * 14 13 12 16 16 H 1.07999 * 120.00138 * 155.31172 * 15 14 13 17 17 C 1.39941 * 120.00051 * 335.30917 * 15 14 13 18 18 N 1.30829 * 120.00023 * 342.22810 * 17 15 14 19 19 Si 1.86805 * 120.00099 * 162.23786 * 17 15 14 20 20 H 1.48492 * 109.47386 * 94.66189 * 19 17 15 21 21 H 1.48502 * 109.46886 * 214.66292 * 19 17 15 22 22 H 1.48500 * 109.46878 * 334.66019 * 19 17 15 23 23 C 1.40717 * 119.51555 * 359.70127 * 14 13 12 24 24 C 1.37617 * 119.74076 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46949 * 300.00113 * 1 2 3 26 26 H 1.08997 * 109.47124 * 60.00449 * 1 2 3 27 27 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47472 * 239.99916 * 2 1 3 29 29 H 1.08997 * 109.47857 * 119.99685 * 2 1 3 30 30 H 1.09004 * 109.46609 * 179.97438 * 6 4 3 31 31 H 1.08996 * 109.46579 * 299.99477 * 6 4 3 32 32 H 1.08994 * 109.47432 * 59.99774 * 6 4 3 33 33 H 1.08993 * 109.47438 * 300.00457 * 10 9 7 34 34 H 1.09002 * 109.46919 * 60.00051 * 10 9 7 35 35 H 1.08002 * 119.86998 * 359.97438 * 12 11 10 36 36 H 1.08005 * 120.13058 * 180.27396 * 13 12 11 37 37 H 0.96999 * 119.99683 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.12894 * 179.97438 * 23 14 13 39 39 H 1.07998 * 119.87412 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9387 1.5007 -1.4433 7 6 3.8347 2.7263 0.7098 8 8 2.9896 3.5018 1.0898 9 8 5.1333 2.9928 0.9205 10 6 5.4488 4.2308 1.6105 11 6 6.9434 4.3587 1.7549 12 6 7.5722 3.8469 2.8795 13 6 8.9371 3.9528 3.0192 14 6 9.6933 4.5943 2.0207 15 6 11.0955 4.7150 2.1567 16 1 11.7156 4.8257 1.2794 17 6 11.6799 4.6911 3.4280 18 7 10.9461 4.9067 4.4894 19 14 13.5079 4.3517 3.6095 20 1 14.2462 5.6384 3.6752 21 1 13.7466 3.5798 4.8555 22 1 13.9839 3.5669 2.4422 23 6 9.0438 5.1150 0.8863 24 6 7.6784 4.9926 0.7650 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8899 30 1 5.0253 1.5872 -1.4436 31 1 3.6466 0.5848 -1.9571 32 1 3.5060 2.3592 -1.9568 33 1 5.0661 5.0745 1.0363 34 1 4.9872 4.2242 2.5979 35 1 6.9890 3.3595 3.6469 36 1 9.4255 3.5495 3.8940 37 1 11.3511 4.8898 5.3706 38 1 9.6144 5.6096 0.1142 39 1 7.1777 5.3911 -0.1050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271893514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:42 Heat of formation + Delta-G solvation = -140.543611 kcal Electronic energy + Delta-G solvation = -20673.908400 eV Core-core repulsion = 17352.476968 eV Total energy + Delta-G solvation = -3321.431432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63146 -39.63945 -39.07869 -37.41285 -35.69670 -33.59549 -32.53507 -31.25298 -31.11149 -28.98469 -26.29787 -25.12540 -23.66813 -22.95998 -22.06090 -21.75221 -19.27500 -18.78178 -18.25280 -17.68186 -17.33569 -16.95740 -16.52429 -16.11044 -15.66668 -15.48083 -14.84822 -14.47637 -14.34241 -14.00340 -13.87896 -13.81425 -13.43200 -13.33834 -13.13536 -13.05783 -12.88696 -12.78230 -12.42152 -12.33789 -12.24541 -12.07589 -11.71449 -11.56731 -11.36695 -11.29794 -11.03860 -10.68775 -9.44523 -9.34389 -8.69814 -6.40070 0.68085 1.09213 1.10803 1.36361 1.40037 1.53707 1.66730 2.19401 2.65264 2.89750 3.56112 3.76219 3.85555 3.92172 4.06731 4.08483 4.18990 4.31273 4.46276 4.47193 4.49031 4.54284 4.61299 4.75856 4.88602 5.00089 5.02075 5.11522 5.17408 5.27270 5.29302 5.37999 5.43531 5.64494 5.87268 6.04021 6.05064 6.13391 6.31139 6.63506 6.71713 6.87931 6.96333 8.27258 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038449 B = 0.002900 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.064495 B = 9653.805473 C = 9693.909816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.391 6.391 4 C 0.101 3.899 5 H 0.123 0.877 6 C -0.162 4.162 7 C 0.452 3.548 8 O -0.534 6.534 9 O -0.352 6.352 10 C 0.141 3.859 11 C -0.230 4.230 12 C -0.080 4.080 13 C -0.193 4.193 14 C 0.088 3.912 15 C -0.492 4.492 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.819 5.819 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.245 4.245 24 C -0.064 4.064 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.291 0.709 38 H 0.104 0.896 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 -10.495 -7.233 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.042 3.958 5 H 0.140 0.860 6 C -0.220 4.220 7 C 0.296 3.704 8 O -0.423 6.423 9 O -0.269 6.269 10 C 0.069 3.931 11 C -0.231 4.231 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.086 3.914 15 C -0.521 4.521 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.444 5.444 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.082 4.082 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.700 -10.040 -6.843 16.867 hybrid contribution 0.812 0.234 0.568 1.018 sum -10.888 -9.806 -6.275 15.940 Atomic orbital electron populations 1.21776 0.92746 1.03653 1.02552 1.22924 0.96509 0.81651 1.01960 1.87995 1.18479 1.29433 1.95157 1.21556 0.83546 0.92874 0.97831 0.85982 1.22197 1.02692 1.04640 0.92442 1.24261 0.80843 0.88714 0.76574 1.90625 1.52764 1.49952 1.49002 1.86644 1.26450 1.43337 1.70452 1.21561 0.92731 0.83048 0.95801 1.18931 0.92808 1.12726 0.98626 1.20769 0.94417 0.98049 0.96589 1.21265 0.93334 1.05075 1.01588 1.18053 0.94026 0.87879 0.91469 1.19930 0.92690 1.45447 0.94009 0.90135 1.26838 1.05631 0.91058 0.94592 1.69873 1.40450 1.33658 1.00435 0.85159 0.75819 0.79466 0.79102 1.18665 1.18988 1.18067 1.21169 0.94387 1.09282 1.01556 1.20699 0.93577 0.97078 0.96838 0.93070 0.92096 0.88363 0.90611 0.92083 0.89765 0.88095 0.92184 0.91095 0.91623 0.87612 0.87779 0.89860 0.87804 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.70 6.47 71.98 0.47 1.16 16 3 O -0.39 -9.62 9.53 -129.95 -1.24 -10.86 16 4 C 0.10 2.34 3.24 29.85 0.10 2.44 16 5 H 0.12 2.19 7.79 -2.39 -0.02 2.18 16 6 C -0.16 -3.00 9.50 71.98 0.68 -2.31 16 7 C 0.45 14.73 7.29 71.24 0.52 15.25 16 8 O -0.53 -20.88 16.26 28.37 0.46 -20.42 16 9 O -0.35 -12.36 10.20 -51.39 -0.52 -12.88 16 10 C 0.14 5.28 5.58 71.23 0.40 5.67 16 11 C -0.23 -9.95 5.54 -19.67 -0.11 -10.06 16 12 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 13 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 14 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 15 C -0.49 -26.01 9.05 23.46 0.21 -25.80 16 16 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 17 C 0.03 1.71 5.14 85.25 0.44 2.15 16 18 N -0.82 -42.05 10.97 21.83 0.24 -41.81 16 19 Si 0.98 37.04 29.60 68.60 2.03 39.07 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.24 -11.86 9.80 22.73 0.22 -11.64 16 24 C -0.06 -2.78 9.67 22.22 0.21 -2.57 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.82 7.87 -2.39 -0.02 0.81 16 29 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 34 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.10 5.67 6.18 -2.91 -0.02 5.65 16 37 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 38 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -64.29 338.38 6.17 -58.11 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 1.03 Total: 24.62 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 4.18 Total: -35.83 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.24 Total: -41.81 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.30 Total: -44.15 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -64.29 6.17 -58.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271893514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.429 kcal (2) G-P(sol) polarization free energy of solvation -64.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds