Wall clock time and date at job start Tue Mar 31 2020 00:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48498 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47226 * 300.00027 * 3 2 1 6 6 H 1.48504 * 109.47131 * 59.99978 * 3 2 1 7 7 C 1.37877 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47439 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47416 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00037 * 179.97438 * 11 10 9 13 13 O 1.21585 * 119.99998 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99687 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99433 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.71270 * 324.45553 * 15 14 12 17 17 C 1.53410 * 109.67625 * 203.92235 * 15 14 12 18 18 C 1.53122 * 109.41163 * 190.70488 * 17 15 14 19 19 C 1.53333 * 109.53775 * 69.99359 * 18 17 15 20 20 C 1.50927 * 108.42806 * 309.95493 * 19 18 17 21 21 O 1.33828 * 127.80030 * 196.73989 * 20 19 18 22 22 C 1.34525 * 109.41757 * 179.91581 * 21 20 19 23 23 C 1.34774 * 108.48212 * 0.03827 * 22 21 20 24 24 C 1.34890 * 123.90162 * 16.71642 * 20 19 18 25 25 H 0.96998 * 119.99965 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47056 * 59.99877 * 9 7 2 27 27 H 1.09002 * 109.46883 * 299.99882 * 9 7 2 28 28 H 1.09003 * 109.46770 * 59.99676 * 10 9 7 29 29 H 1.09000 * 109.46823 * 300.00339 * 10 9 7 30 30 H 0.96998 * 119.99796 * 0.02562 * 11 10 9 31 31 H 0.96997 * 120.00496 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.48287 * 310.68732 * 17 15 14 33 33 H 1.09004 * 109.47918 * 70.72254 * 17 15 14 34 34 H 1.09007 * 109.45827 * 190.01790 * 18 17 15 35 35 H 1.09005 * 109.46178 * 309.97310 * 18 17 15 36 36 H 1.09005 * 109.67065 * 69.69080 * 19 18 17 37 37 H 1.08998 * 109.67193 * 190.21455 * 19 18 17 38 38 H 1.08000 * 125.76054 * 180.29565 * 22 21 20 39 39 H 1.07999 * 126.67580 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5127 -7.2652 0.0008 15 6 2.2453 -8.5339 0.0009 16 1 3.1522 -8.4349 -0.5955 17 6 1.3601 -9.6416 -0.5848 18 6 2.0187 -11.0021 -0.3400 19 6 1.9620 -11.3377 1.1550 20 6 2.4810 -10.1513 1.9303 21 8 2.8897 -10.1191 3.2042 22 6 3.2796 -8.8702 3.5174 23 6 3.1193 -8.0877 2.4318 24 6 2.6060 -8.9114 1.4139 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.5428 -4.9308 0.0011 31 1 0.5428 -7.2653 0.0015 32 1 0.3827 -9.6189 -0.1029 33 1 1.2409 -9.4830 -1.6566 34 1 1.4884 -11.7691 -0.9048 35 1 3.0585 -10.9660 -0.6650 36 1 0.9320 -11.5441 1.4460 37 1 2.5832 -12.2098 1.3592 38 1 3.6610 -8.5497 4.4756 39 1 3.3413 -7.0334 2.3581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273096349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:35 Heat of formation + Delta-G solvation = -32.907265 kcal Electronic energy + Delta-G solvation = -21196.029378 eV Core-core repulsion = 17911.558160 eV Total energy + Delta-G solvation = -3284.471219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72318 -39.63593 -37.46327 -34.85086 -33.95791 -32.87348 -32.41003 -30.03728 -29.30004 -28.21141 -24.77928 -23.44114 -22.48642 -21.44502 -20.95447 -20.43393 -19.16803 -17.88742 -17.33691 -16.50593 -16.27648 -15.65475 -15.08803 -14.90004 -14.64519 -14.50443 -14.04090 -13.90607 -13.44313 -13.31154 -12.91568 -12.61946 -12.40505 -12.33315 -12.26866 -11.50429 -11.25255 -11.16134 -11.03669 -10.97574 -10.60109 -10.30491 -9.89639 -9.62432 -9.51950 -9.22544 -9.02824 -8.47579 -8.31754 -8.22634 -6.08103 -4.10505 1.69289 2.58148 2.90125 3.19508 3.29348 3.37047 3.42724 3.63907 4.39480 4.41189 4.48121 4.57775 4.71880 4.84331 4.93590 5.11404 5.23747 5.24658 5.29124 5.35514 5.53286 5.61330 5.67169 5.92232 5.97929 6.11755 6.15130 6.33004 6.42221 6.56872 6.69284 6.80482 7.04373 7.15456 7.29311 7.59448 7.65334 7.91542 8.28035 8.48590 8.95046 9.05369 9.54240 11.03641 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034046 B = 0.003140 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.215937 B = 8915.926237 C = 9343.584546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.744 5.744 15 C 0.235 3.765 16 H 0.096 0.904 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.035 4.035 20 C -0.021 4.021 21 O -0.175 6.175 22 C -0.060 4.060 23 C -0.174 4.174 24 C -0.185 4.185 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.392 0.608 31 H 0.394 0.606 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.201 0.799 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -23.780 1.747 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.399 3.601 13 O -0.474 6.474 14 N -0.399 5.399 15 C 0.129 3.871 16 H 0.114 0.886 17 C -0.166 4.166 18 C -0.149 4.149 19 C -0.072 4.072 20 C -0.072 4.072 21 O -0.071 6.071 22 C -0.127 4.127 23 C -0.193 4.193 24 C -0.187 4.187 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.227 0.773 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.218 0.782 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.291 -23.851 1.921 23.963 hybrid contribution -0.463 1.353 0.174 1.441 sum 0.828 -22.498 2.094 22.610 Atomic orbital electron populations 1.69969 1.06086 1.26718 1.50599 1.25000 0.94894 0.99413 0.95047 0.86459 0.80197 0.83347 0.77587 1.19559 1.20950 1.20963 1.21097 0.93305 0.90367 1.51041 0.92179 1.19326 0.94268 0.91118 0.97777 1.21567 0.95598 0.80461 1.00560 1.45542 1.09818 1.05330 1.78594 1.16070 0.85719 0.80462 0.77836 1.90889 1.11642 1.86580 1.58251 1.45133 1.09216 1.04275 1.81312 1.19055 0.95374 0.81950 0.90749 0.88588 1.21916 0.99219 0.93724 1.01766 1.21537 1.02308 0.96872 0.94187 1.20187 1.01220 0.92888 0.92872 1.22282 1.04563 0.97372 0.82963 1.83867 1.64014 1.31786 1.27419 1.24072 1.06359 0.81224 1.01024 1.21624 1.03629 1.01514 0.92567 1.20607 1.06749 0.93124 0.98255 0.92938 0.95993 0.96006 0.92896 0.92827 0.77462 0.77283 0.90927 0.90317 0.89952 0.90807 0.89687 0.89865 0.78227 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C 0.14 3.07 5.61 -4.05 -0.02 3.04 16 11 N -0.74 -13.25 5.56 -65.23 -0.36 -13.62 16 12 C 0.70 12.35 7.85 -86.91 -0.68 11.67 16 13 O -0.59 -12.74 15.18 5.29 0.08 -12.66 16 14 N -0.74 -9.81 5.04 -59.63 -0.30 -10.11 16 15 C 0.23 2.85 2.81 -68.90 -0.19 2.66 16 16 H 0.10 1.36 7.61 -51.93 -0.40 0.96 16 17 C -0.13 -1.02 5.40 -26.46 -0.14 -1.16 16 18 C -0.11 -0.72 5.89 -26.50 -0.16 -0.88 16 19 C -0.03 -0.26 6.30 -27.60 -0.17 -0.43 16 20 C -0.02 -0.24 7.22 -35.39 -0.26 -0.49 16 21 O -0.17 -2.20 10.65 6.36 0.07 -2.13 16 22 C -0.06 -0.74 12.10 29.50 0.36 -0.38 16 23 C -0.17 -2.55 10.22 -39.90 -0.41 -2.96 16 24 C -0.18 -2.45 5.62 -104.93 -0.59 -3.04 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 31 H 0.39 4.12 8.61 -40.82 -0.35 3.77 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.20 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.15 2.51 7.08 -52.49 -0.37 2.14 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -33.64 326.50 -8.35 -41.99 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.65 Total: 5.76 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.82 Total: -5.11 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.07 Total: -49.26 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.15 Total: -14.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.64 -8.35 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273096349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.082 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds