Wall clock time and date at job start Tue Mar 31 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48498 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47226 * 300.00027 * 3 2 1 6 6 H 1.48504 * 109.47131 * 59.99978 * 3 2 1 7 7 C 1.37877 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47439 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47416 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00037 * 179.97438 * 11 10 9 13 13 O 1.21585 * 119.99998 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99687 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99433 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.71270 * 324.45553 * 15 14 12 17 17 C 1.53410 * 109.67625 * 203.92235 * 15 14 12 18 18 C 1.53122 * 109.41163 * 190.70488 * 17 15 14 19 19 C 1.53333 * 109.53775 * 69.99359 * 18 17 15 20 20 C 1.50927 * 108.42806 * 309.95493 * 19 18 17 21 21 O 1.33828 * 127.80030 * 196.73989 * 20 19 18 22 22 C 1.34525 * 109.41757 * 179.91581 * 21 20 19 23 23 C 1.34774 * 108.48212 * 0.03827 * 22 21 20 24 24 C 1.34890 * 123.90162 * 16.71642 * 20 19 18 25 25 H 0.96998 * 119.99965 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47056 * 59.99877 * 9 7 2 27 27 H 1.09002 * 109.46883 * 299.99882 * 9 7 2 28 28 H 1.09003 * 109.46770 * 59.99676 * 10 9 7 29 29 H 1.09000 * 109.46823 * 300.00339 * 10 9 7 30 30 H 0.96998 * 119.99796 * 0.02562 * 11 10 9 31 31 H 0.96997 * 120.00496 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.48287 * 310.68732 * 17 15 14 33 33 H 1.09004 * 109.47918 * 70.72254 * 17 15 14 34 34 H 1.09007 * 109.45827 * 190.01790 * 18 17 15 35 35 H 1.09005 * 109.46178 * 309.97310 * 18 17 15 36 36 H 1.09005 * 109.67065 * 69.69080 * 19 18 17 37 37 H 1.08998 * 109.67193 * 190.21455 * 19 18 17 38 38 H 1.08000 * 125.76054 * 180.29565 * 22 21 20 39 39 H 1.07999 * 126.67580 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0007 13 8 3.4025 -6.0980 0.0003 14 7 1.5127 -7.2652 0.0008 15 6 2.2453 -8.5339 0.0009 16 1 3.1522 -8.4349 -0.5955 17 6 1.3601 -9.6416 -0.5848 18 6 2.0187 -11.0021 -0.3400 19 6 1.9620 -11.3377 1.1550 20 6 2.4810 -10.1513 1.9303 21 8 2.8897 -10.1191 3.2042 22 6 3.2796 -8.8702 3.5174 23 6 3.1193 -8.0877 2.4318 24 6 2.6060 -8.9114 1.4139 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.5428 -4.9308 0.0011 31 1 0.5428 -7.2653 0.0015 32 1 0.3827 -9.6189 -0.1029 33 1 1.2409 -9.4830 -1.6566 34 1 1.4884 -11.7691 -0.9048 35 1 3.0585 -10.9660 -0.6650 36 1 0.9320 -11.5441 1.4460 37 1 2.5832 -12.2098 1.3592 38 1 3.6610 -8.5497 4.4756 39 1 3.3413 -7.0334 2.3581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273096349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:34 Heat of formation + Delta-G solvation = -56.354156 kcal Electronic energy + Delta-G solvation = -21197.046112 eV Core-core repulsion = 17911.558160 eV Total energy + Delta-G solvation = -3285.487952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.67721 -41.01901 -38.40435 -36.55312 -35.09201 -34.77037 -33.52849 -31.60009 -30.34145 -29.28096 -26.65955 -24.44319 -23.27783 -22.92814 -22.36123 -21.82406 -20.08405 -19.24581 -18.44835 -18.30010 -17.44056 -16.84969 -16.52020 -16.47545 -15.94170 -15.40175 -15.25624 -15.17628 -14.99995 -14.39950 -14.27727 -13.86150 -13.74895 -13.22447 -13.20151 -13.09026 -12.95313 -12.52019 -12.27086 -12.20173 -11.85322 -11.68515 -11.63616 -11.48029 -11.16053 -10.66355 -10.61377 -10.35835 -9.77013 -9.23407 -8.24786 -6.35039 0.76477 1.40638 1.41209 1.48592 1.55204 1.94073 2.03656 2.20762 2.41178 3.09971 3.37913 3.68824 3.81064 3.84885 4.10858 4.17805 4.32326 4.41895 4.49504 4.51148 4.59355 4.62666 4.85048 4.88047 4.96452 4.99858 5.13680 5.22484 5.30030 5.30661 5.34477 5.51613 5.54062 5.58532 5.62831 5.78621 6.06235 6.16751 6.19278 6.78210 7.15127 7.34382 7.63110 8.87414 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034046 B = 0.003140 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.215937 B = 8915.926237 C = 9343.584546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.735 5.735 12 C 0.699 3.301 13 O -0.635 6.635 14 N -0.724 5.724 15 C 0.231 3.769 16 H 0.069 0.931 17 C -0.120 4.120 18 C -0.107 4.107 19 C -0.035 4.035 20 C -0.011 4.011 21 O -0.178 6.178 22 C -0.052 4.052 23 C -0.212 4.212 24 C -0.212 4.212 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.007 0.993 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.406 0.594 31 H 0.410 0.590 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -25.607 1.623 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.389 5.389 12 C 0.399 3.601 13 O -0.517 6.517 14 N -0.380 5.380 15 C 0.125 3.875 16 H 0.087 0.913 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.071 4.071 20 C -0.062 4.062 21 O -0.074 6.074 22 C -0.118 4.118 23 C -0.232 4.232 24 C -0.215 4.215 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.241 0.759 31 H 0.246 0.754 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.246 0.754 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.564 -25.727 1.794 25.796 hybrid contribution -0.253 1.860 0.242 1.893 sum 0.311 -23.867 2.036 23.956 Atomic orbital electron populations 1.70066 1.07516 1.27944 1.51070 1.25873 0.95817 1.03089 0.94397 0.85385 0.78941 0.78718 0.77941 1.19024 1.20101 1.20189 1.21489 0.93569 0.91926 1.51458 0.92396 1.19118 0.94195 0.91644 0.96309 1.21037 0.94587 0.81204 0.99384 1.45227 1.10308 1.04446 1.78949 1.16175 0.85246 0.81234 0.77470 1.90859 1.13619 1.87222 1.59958 1.44989 1.10007 1.03369 1.79598 1.19254 0.95424 0.82413 0.90367 0.91308 1.21931 0.98870 0.92770 1.02252 1.21588 1.02268 0.96650 0.93948 1.20476 1.02498 0.91553 0.92606 1.23074 1.02624 0.98121 0.82414 1.83899 1.63905 1.31580 1.28054 1.24522 1.05050 0.80801 1.01431 1.21578 1.06192 1.00670 0.94733 1.20762 1.08225 0.93955 0.98563 0.92523 0.97231 0.97424 0.94188 0.93909 0.75909 0.75397 0.89495 0.89107 0.86505 0.91579 0.87517 0.88079 0.75375 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -31.07 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.31 5.61 86.38 0.48 7.79 16 11 N -0.73 -26.98 5.56 -478.54 -2.66 -29.64 16 12 C 0.70 25.40 7.85 179.05 1.41 26.81 16 13 O -0.63 -28.49 15.18 -3.98 -0.06 -28.55 16 14 N -0.72 -19.04 5.04 -460.83 -2.32 -21.36 16 15 C 0.23 5.54 2.81 44.36 0.12 5.67 16 16 H 0.07 2.02 7.61 -2.39 -0.02 2.01 16 17 C -0.12 -1.60 5.40 30.77 0.17 -1.44 16 18 C -0.11 -1.02 5.89 30.75 0.18 -0.84 16 19 C -0.03 -0.39 6.30 30.03 0.19 -0.20 16 20 C -0.01 -0.24 7.22 24.99 0.18 -0.06 16 21 O -0.18 -4.23 10.65 -0.17 0.00 -4.23 16 22 C -0.05 -1.25 12.10 67.02 0.81 -0.44 16 23 C -0.21 -6.46 10.22 22.06 0.23 -6.24 16 24 C -0.21 -5.62 5.62 -20.07 -0.11 -5.74 16 25 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.41 12.67 8.49 -92.71 -0.79 11.88 16 31 H 0.41 8.12 8.61 -92.71 -0.80 7.32 16 32 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.07 0.76 8.11 -2.38 -0.02 0.74 16 36 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.23 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.12 4.32 7.08 -2.91 -0.02 4.30 16 Total: -1.00 -74.79 326.50 1.26 -73.54 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.51 Total: 21.75 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 4.50 Total: -3.22 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -4.70 Total: -105.44 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.06 Total: -32.78 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -74.79 1.26 -73.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273096349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.181 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds