Wall clock time and date at job start Tue Mar 31 2020 00:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47164 * 270.00343 * 3 2 1 5 5 H 1.48508 * 109.46909 * 30.00124 * 3 2 1 6 6 H 1.48498 * 109.47047 * 149.99740 * 3 2 1 7 7 C 1.37879 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99636 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00139 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99731 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00415 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99607 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99932 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47281 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.97005 * 120.00561 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47255 * 60.00151 * 9 7 2 26 26 H 1.09001 * 109.47285 * 300.00382 * 9 7 2 27 27 H 1.08997 * 109.47329 * 59.99762 * 10 9 7 28 28 H 1.09001 * 109.47041 * 300.00098 * 10 9 7 29 29 H 0.96994 * 120.00026 * 0.02562 * 11 10 9 30 30 H 0.97002 * 119.99810 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.46981 * 59.99841 * 15 14 12 32 32 H 1.09008 * 109.46889 * 300.00260 * 15 14 12 33 33 H 1.08997 * 109.47096 * 59.99739 * 16 15 14 34 34 H 1.09005 * 109.46515 * 299.99791 * 16 15 14 35 35 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 37 37 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 38 38 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 39 39 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4866 -2.6364 0.0001 12 6 6.1605 -3.8036 0.0008 13 8 5.5526 -4.8566 0.0008 14 7 7.5083 -3.8035 0.0003 15 6 8.2409 -5.0722 0.0004 16 6 9.7451 -4.7926 0.0004 17 6 10.4986 -6.0976 0.0012 18 6 10.8438 -6.6960 -1.1966 19 6 11.5341 -7.8925 -1.1987 20 6 11.8815 -8.4936 0.0025 21 8 12.5611 -9.6705 0.0031 22 6 11.5294 -7.8939 1.2029 23 6 10.8445 -6.6942 1.1996 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6795 0.8894 26 1 3.8745 -0.6806 -0.8905 27 1 3.6579 -3.1505 -0.8896 28 1 3.6586 -3.1501 0.8903 29 1 5.9715 -1.7964 0.0005 30 1 7.9932 -2.9634 -0.0001 31 1 7.9772 -5.6440 -0.8893 32 1 7.9778 -5.6436 0.8907 33 1 10.0083 -4.2209 0.8903 34 1 10.0083 -4.2211 -0.8897 35 1 10.5735 -6.2274 -2.1314 36 1 11.8032 -8.3597 -2.1344 37 1 13.5228 -9.5694 0.0031 38 1 11.7948 -8.3622 2.1392 39 1 10.5740 -6.2247 2.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273217056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:29 Heat of formation + Delta-G solvation = -63.278262 kcal Electronic energy + Delta-G solvation = -19857.337056 eV Core-core repulsion = 16571.548852 eV Total energy + Delta-G solvation = -3285.788204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.21693 -39.57904 -37.53656 -35.52523 -34.65227 -32.84885 -32.12606 -31.38089 -30.04142 -27.89898 -24.92206 -23.42016 -23.20752 -21.48570 -20.80562 -20.62313 -18.80812 -18.04737 -16.88788 -16.36067 -16.27296 -15.96520 -15.44144 -15.42002 -14.41478 -14.32792 -14.18202 -13.95019 -13.79786 -13.63483 -13.23650 -12.95207 -12.59107 -12.45072 -11.97439 -11.78027 -11.55414 -11.45778 -11.17200 -10.83655 -10.37242 -10.25711 -9.96875 -9.76128 -9.37715 -9.31072 -9.07120 -8.86387 -8.61597 -8.36739 -6.09663 -4.09573 0.80360 0.97114 2.94537 3.24574 3.25690 3.33114 3.34524 3.54183 3.81878 4.38571 4.39217 4.41820 4.59940 4.69426 4.81477 4.81544 4.99095 5.20508 5.23152 5.23504 5.48638 5.58744 5.71429 5.80833 5.90185 6.04019 6.10559 6.22478 6.26880 6.41663 6.53430 6.61322 6.83608 7.05534 7.24228 7.26285 7.31139 7.68933 8.31227 8.47505 8.92160 8.95794 9.50372 11.03378 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.054992 B = 0.002219 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.039846 B =12613.310140 C =12800.951604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.698 3.302 13 O -0.594 6.594 14 N -0.755 5.755 15 C 0.145 3.855 16 C -0.091 4.091 17 C -0.087 4.087 18 C -0.096 4.096 19 C -0.144 4.144 20 C 0.100 3.900 21 O -0.500 6.500 22 C -0.143 4.143 23 C -0.096 4.096 24 H 0.264 0.736 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.391 0.609 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.389 0.611 38 H 0.128 0.872 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.705 -10.700 0.023 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.396 5.396 12 C 0.398 3.602 13 O -0.472 6.472 14 N -0.412 5.412 15 C 0.021 3.979 16 C -0.129 4.129 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.162 4.162 20 C 0.055 3.945 21 O -0.310 6.310 22 C -0.162 4.162 23 C -0.114 4.114 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.224 0.776 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.245 0.755 38 H 0.146 0.854 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 28.359 -11.826 0.025 30.726 hybrid contribution 1.288 1.833 -0.019 2.241 sum 29.646 -9.992 0.006 31.285 Atomic orbital electron populations 1.69903 1.06277 1.27018 1.50486 1.25006 0.94773 0.99142 0.94434 0.86741 0.80239 0.83552 0.78453 1.20260 1.21305 1.19122 1.20926 0.88660 0.94914 1.51528 0.90574 1.19796 0.97926 0.91448 0.96769 1.21376 0.74780 0.99819 1.01515 1.45520 1.08931 1.06217 1.78958 1.16034 0.81246 0.84844 0.78076 1.90914 1.67734 1.30599 1.57955 1.45123 1.05109 1.09064 1.81912 1.21074 0.88678 0.85478 1.02695 1.20785 0.93712 0.94572 1.03830 1.19714 0.99005 0.96826 0.93230 1.20991 0.97528 0.94955 0.97958 1.21430 1.01080 0.95784 0.97908 1.18516 0.97432 0.86089 0.92433 1.84841 1.22888 1.26790 1.96530 1.21428 1.01113 0.95732 0.97913 1.20992 0.97573 0.94920 0.97951 0.92571 0.96033 0.96479 0.92160 0.92150 0.77598 0.77314 0.91590 0.91599 0.90115 0.90113 0.85349 0.85356 0.75521 0.85356 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 10 C 0.15 3.09 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -12.44 5.56 -65.22 -0.36 -12.80 16 12 C 0.70 11.88 8.57 -86.91 -0.74 11.14 16 13 O -0.59 -12.83 16.34 5.29 0.09 -12.74 16 14 N -0.75 -8.87 5.56 -65.22 -0.36 -9.23 16 15 C 0.15 1.53 5.66 -4.04 -0.02 1.51 16 16 C -0.09 -0.63 5.46 -27.89 -0.15 -0.79 16 17 C -0.09 -0.68 5.13 -104.60 -0.54 -1.22 16 18 C -0.10 -0.74 9.69 -39.61 -0.38 -1.13 16 19 C -0.14 -1.13 9.99 -39.43 -0.39 -1.53 16 20 C 0.10 0.82 6.71 -39.21 -0.26 0.56 16 21 O -0.50 -3.69 13.50 -19.41 -0.26 -3.96 16 22 C -0.14 -1.13 9.99 -39.43 -0.39 -1.52 16 23 C -0.10 -0.74 9.69 -39.61 -0.38 -1.13 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 26 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.39 5.32 8.49 -40.82 -0.35 4.97 16 30 H 0.39 3.31 8.49 -40.82 -0.35 2.97 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.39 0.91 9.06 45.56 0.41 1.32 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -35.79 337.00 -8.42 -44.20 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.85 Total: 4.55 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.84 Total: -4.82 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.05 Total: -48.69 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.18 Total: -16.70 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.79 -8.42 -44.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273217056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.074 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds