Wall clock time and date at job start Tue Mar 31 2020 00:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47164 * 270.00343 * 3 2 1 5 5 H 1.48508 * 109.46909 * 30.00124 * 3 2 1 6 6 H 1.48498 * 109.47047 * 149.99740 * 3 2 1 7 7 C 1.37879 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99636 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00139 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99731 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00415 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99607 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99932 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47281 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.97005 * 120.00561 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47255 * 60.00151 * 9 7 2 26 26 H 1.09001 * 109.47285 * 300.00382 * 9 7 2 27 27 H 1.08997 * 109.47329 * 59.99762 * 10 9 7 28 28 H 1.09001 * 109.47041 * 300.00098 * 10 9 7 29 29 H 0.96994 * 120.00026 * 0.02562 * 11 10 9 30 30 H 0.97002 * 119.99810 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.46981 * 59.99841 * 15 14 12 32 32 H 1.09008 * 109.46889 * 300.00260 * 15 14 12 33 33 H 1.08997 * 109.47096 * 59.99739 * 16 15 14 34 34 H 1.09005 * 109.46515 * 299.99791 * 16 15 14 35 35 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 37 37 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 38 38 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 39 39 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4866 -2.6364 0.0001 12 6 6.1605 -3.8036 0.0008 13 8 5.5526 -4.8566 0.0008 14 7 7.5083 -3.8035 0.0003 15 6 8.2409 -5.0722 0.0004 16 6 9.7451 -4.7926 0.0004 17 6 10.4986 -6.0976 0.0012 18 6 10.8438 -6.6960 -1.1966 19 6 11.5341 -7.8925 -1.1987 20 6 11.8815 -8.4936 0.0025 21 8 12.5611 -9.6705 0.0031 22 6 11.5294 -7.8939 1.2029 23 6 10.8445 -6.6942 1.1996 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6795 0.8894 26 1 3.8745 -0.6806 -0.8905 27 1 3.6579 -3.1505 -0.8896 28 1 3.6586 -3.1501 0.8903 29 1 5.9715 -1.7964 0.0005 30 1 7.9932 -2.9634 -0.0001 31 1 7.9772 -5.6440 -0.8893 32 1 7.9778 -5.6436 0.8907 33 1 10.0083 -4.2209 0.8903 34 1 10.0083 -4.2211 -0.8897 35 1 10.5735 -6.2274 -2.1314 36 1 11.8032 -8.3597 -2.1344 37 1 13.5228 -9.5694 0.0031 38 1 11.7948 -8.3622 2.1392 39 1 10.5740 -6.2247 2.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273217056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:29 Heat of formation + Delta-G solvation = -91.354274 kcal Electronic energy + Delta-G solvation = -19858.554523 eV Core-core repulsion = 16571.548852 eV Total energy + Delta-G solvation = -3287.005671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05770 -40.62684 -38.14757 -36.82705 -36.00621 -34.78464 -33.11299 -31.92688 -31.72149 -28.76567 -26.62559 -24.34760 -23.75969 -22.62835 -22.17223 -21.90152 -19.40977 -19.33805 -18.88321 -17.31550 -17.07417 -16.68494 -16.60515 -16.27079 -16.10813 -15.51928 -15.35272 -15.27234 -14.65523 -14.61707 -14.52641 -14.28782 -13.63324 -13.32726 -13.12552 -12.98806 -12.58334 -12.42892 -12.20885 -12.15984 -12.08907 -11.74103 -11.52412 -11.36617 -11.28654 -10.77251 -10.36276 -9.93644 -9.71484 -9.43928 -8.28219 -6.35629 0.23581 0.40978 1.40580 1.43677 1.54914 1.76543 2.17729 2.38681 2.67260 3.06715 3.31272 3.39668 3.88675 3.96461 4.08475 4.11234 4.21702 4.37647 4.45960 4.46883 4.59606 4.61350 4.77781 4.93610 4.94857 5.08479 5.11976 5.19290 5.34425 5.43723 5.46844 5.48061 5.51485 5.65904 5.68472 5.91790 6.07699 6.25105 6.71836 6.86031 7.18122 7.28739 7.62606 8.88588 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.054992 B = 0.002219 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.039846 B =12613.310140 C =12800.951604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.731 5.731 12 C 0.695 3.305 13 O -0.645 6.645 14 N -0.729 5.729 15 C 0.145 3.855 16 C -0.076 4.076 17 C -0.098 4.098 18 C -0.102 4.102 19 C -0.157 4.157 20 C 0.091 3.909 21 O -0.514 6.514 22 C -0.156 4.156 23 C -0.102 4.102 24 H 0.268 0.732 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.412 0.588 30 H 0.415 0.585 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.409 0.591 38 H 0.138 0.862 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.958 -8.771 0.031 34.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.386 5.386 12 C 0.394 3.606 13 O -0.527 6.527 14 N -0.387 5.387 15 C 0.021 3.979 16 C -0.114 4.114 17 C -0.099 4.099 18 C -0.120 4.120 19 C -0.175 4.175 20 C 0.046 3.954 21 O -0.327 6.327 22 C -0.175 4.175 23 C -0.120 4.120 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.248 0.752 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.268 0.732 38 H 0.156 0.844 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 31.716 -9.878 0.033 33.219 hybrid contribution 0.269 1.077 -0.024 1.110 sum 31.985 -8.801 0.010 33.174 Atomic orbital electron populations 1.70081 1.08628 1.28420 1.51999 1.26118 0.95728 1.03985 0.93690 0.85503 0.79677 0.77128 0.79320 1.18977 1.21364 1.15788 1.21265 0.91670 0.93350 1.51532 0.95431 1.19640 0.94274 0.92803 0.98160 1.20869 0.77325 0.98268 0.99651 1.45096 1.07201 1.07344 1.78979 1.16220 0.82695 0.83883 0.77753 1.90888 1.69251 1.32412 1.60126 1.44890 1.03142 1.10751 1.79899 1.21148 0.90938 0.84541 1.01264 1.20686 0.90423 0.94569 1.05677 1.19850 0.99398 0.97325 0.93318 1.21228 0.97211 0.94935 0.98636 1.21629 1.01396 0.96156 0.98313 1.18702 0.97639 0.86234 0.92792 1.84780 1.24713 1.26721 1.96531 1.21626 1.01434 0.96109 0.98320 1.21228 0.97253 0.94899 0.98626 0.92358 0.94339 0.94490 0.94211 0.94227 0.75218 0.74792 0.93128 0.93141 0.88269 0.88262 0.84041 0.84436 0.73184 0.84442 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.96 42.04 27.47 68.60 1.88 43.93 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 7 C -0.54 -30.98 9.66 25.60 0.25 -30.74 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 10 C 0.16 6.80 5.61 86.38 0.48 7.29 16 11 N -0.73 -23.02 5.56 -478.53 -2.66 -25.69 16 12 C 0.69 22.74 8.57 179.05 1.53 24.27 16 13 O -0.64 -28.09 16.34 -3.99 -0.07 -28.16 16 14 N -0.73 -15.28 5.56 -478.52 -2.66 -17.94 16 15 C 0.15 2.81 5.66 86.38 0.49 3.30 16 16 C -0.08 -0.83 5.46 29.85 0.16 -0.67 16 17 C -0.10 -1.35 5.13 -19.85 -0.10 -1.45 16 18 C -0.10 -1.42 9.69 22.25 0.22 -1.20 16 19 C -0.16 -2.31 9.99 22.37 0.22 -2.09 16 20 C 0.09 1.42 6.71 22.51 0.15 1.57 16 21 O -0.51 -7.15 13.50 -92.38 -1.25 -8.40 16 22 C -0.16 -2.31 9.99 22.37 0.22 -2.09 16 23 C -0.10 -1.42 9.69 22.25 0.22 -1.20 16 24 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 25 H 0.04 1.59 7.20 -2.39 -0.02 1.58 16 26 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.41 9.64 8.49 -92.71 -0.79 8.85 16 30 H 0.42 5.32 8.49 -92.71 -0.79 4.53 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.10 0.77 8.09 -2.38 -0.02 0.75 16 35 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.41 1.49 9.06 -74.06 -0.67 0.82 16 38 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -80.30 337.00 -1.24 -81.54 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -1.22 Total: 16.74 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 4.43 Total: -2.80 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -5.02 Total: -102.85 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.31 Total: -36.56 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.93 kcal Total: -80.30 -1.24 -81.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273217056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.815 kcal (2) G-P(sol) polarization free energy of solvation -80.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds