Wall clock time and date at job start Tue Mar 31 2020 00:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 H 1.09008 * 109.47304 * 304.99667 * 16 15 14 18 18 O 1.42902 * 109.47328 * 64.99617 * 16 15 14 19 19 C 1.50700 * 109.47144 * 185.00065 * 16 15 14 20 20 C 1.38237 * 119.99696 * 279.71924 * 19 16 15 21 21 C 1.38237 * 119.99918 * 179.78842 * 20 19 16 22 22 C 1.38237 * 119.99685 * 0.44354 * 21 20 19 23 23 C 1.38233 * 120.00341 * 359.81709 * 22 21 20 24 24 C 1.38228 * 120.00326 * 99.99831 * 19 16 15 25 25 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 27 27 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 28 28 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 29 29 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 30 30 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 31 31 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 32 32 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 33 33 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 34 34 H 0.96696 * 113.99765 * 60.00422 * 18 16 15 35 35 H 1.08000 * 119.99803 * 0.02562 * 20 19 16 36 36 H 1.08001 * 120.00058 * 180.28243 * 21 20 19 37 37 H 1.08004 * 119.99387 * 179.82833 * 22 21 20 38 38 H 1.08001 * 120.00144 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00315 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 1 0.5663 -9.5864 0.8479 18 8 0.5090 -9.6940 -1.2146 19 6 2.0001 -10.9979 0.1366 20 6 2.5973 -11.5651 -0.9736 21 6 3.2884 -12.7564 -0.8538 22 6 3.3744 -13.3849 0.3744 23 6 2.7726 -12.8204 1.4834 24 6 2.0853 -11.6270 1.3644 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8713 -3.6047 0.8890 29 1 2.8725 -3.6040 -0.8911 30 1 0.5426 -4.9308 -0.0020 31 1 0.5426 -7.2652 -0.0034 32 1 2.8721 -8.5954 -0.8871 33 1 2.8713 -8.5880 0.8928 34 1 1.0553 -9.7888 -2.0067 35 1 2.5272 -11.0757 -1.9338 36 1 3.7588 -13.1972 -1.7202 37 1 3.9120 -14.3171 0.4674 38 1 2.8395 -13.3118 2.4429 39 1 1.6153 -11.1859 2.2310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273547310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:29 Heat of formation + Delta-G solvation = -68.841346 kcal Electronic energy + Delta-G solvation = -20258.742791 eV Core-core repulsion = 16972.713353 eV Total energy + Delta-G solvation = -3286.029437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19814 -39.36824 -37.39385 -34.93749 -34.09607 -32.80639 -32.02063 -31.23626 -29.73163 -27.93539 -24.82394 -23.64560 -22.94169 -21.45377 -21.03288 -20.49068 -18.11456 -18.03990 -16.51163 -16.36175 -16.27512 -15.53063 -15.28180 -15.17528 -14.50831 -14.40888 -14.23597 -13.86227 -13.74172 -13.38169 -13.32502 -13.05967 -12.40969 -12.26640 -12.12327 -11.58439 -11.33984 -11.15831 -11.03289 -10.60511 -10.53495 -10.30397 -9.93265 -9.54529 -9.29797 -9.23444 -9.13706 -9.02604 -8.47030 -8.22397 -6.07549 -4.09987 0.91774 1.02741 2.99561 3.29798 3.37283 3.39836 3.43157 3.60580 4.06892 4.24280 4.42114 4.43712 4.55488 4.65354 4.73140 4.81450 4.86286 5.11539 5.19409 5.29608 5.53163 5.57146 5.59861 5.68777 6.06415 6.14007 6.17433 6.31863 6.42188 6.56350 6.60485 6.80054 7.02812 7.20105 7.26678 7.59454 7.65753 7.91984 8.28073 8.46058 8.95032 9.01970 9.54682 11.04184 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050610 B = 0.002389 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.121343 B =11715.949334 C =11878.546366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.698 3.302 13 O -0.600 6.600 14 N -0.749 5.749 15 C 0.116 3.884 16 C 0.138 3.862 17 H 0.115 0.885 18 O -0.550 6.550 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.106 4.106 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.394 0.606 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.377 0.623 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -27.066 0.150 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.479 6.479 14 N -0.407 5.407 15 C -0.009 4.009 16 C 0.078 3.922 17 H 0.132 0.868 18 O -0.356 6.356 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.124 4.124 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.227 0.773 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.225 0.775 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.070 -26.832 0.554 26.917 hybrid contribution 0.024 0.807 -0.319 0.868 sum 2.094 -26.025 0.234 26.110 Atomic orbital electron populations 1.69968 1.06082 1.26723 1.50572 1.25004 0.94905 0.99429 0.95060 0.86453 0.80174 0.83329 0.77580 1.19577 1.20961 1.20960 1.21095 0.93306 0.90352 1.51057 0.92166 1.19336 0.94269 0.91090 0.97835 1.21591 0.95634 0.80423 1.00619 1.45526 1.09889 1.05274 1.78433 1.16063 0.85605 0.80506 0.78052 1.90890 1.11808 1.86718 1.58502 1.44988 1.09664 1.04254 1.81783 1.21757 0.94068 0.81916 1.03205 1.21065 0.92656 0.89675 0.88778 0.86765 1.86634 1.37521 1.96053 1.15422 1.20372 0.99564 0.97167 0.94393 1.20909 0.97435 0.96161 0.98157 1.21140 0.99052 0.95515 0.97812 1.21214 0.99500 1.00009 0.92973 1.21173 0.97763 0.95861 0.98851 1.21038 0.99093 0.95425 0.96862 0.92930 0.95938 0.95957 0.92807 0.92810 0.77322 0.76777 0.91397 0.90767 0.77487 0.86033 0.85832 0.85991 0.85820 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.36 5.56 -65.22 -0.36 -13.73 16 12 C 0.70 12.49 8.57 -86.92 -0.74 11.75 16 13 O -0.60 -13.18 16.34 5.28 0.09 -13.09 16 14 N -0.75 -9.67 5.51 -65.23 -0.36 -10.03 16 15 C 0.12 1.28 5.29 -4.04 -0.02 1.25 16 16 C 0.14 1.17 3.24 -27.88 -0.09 1.07 16 17 H 0.11 0.90 8.00 -51.92 -0.42 0.48 16 18 O -0.55 -4.86 13.13 -35.23 -0.46 -5.32 16 19 C -0.11 -0.95 4.97 -104.63 -0.52 -1.47 16 20 C -0.11 -0.84 9.32 -39.58 -0.37 -1.21 16 21 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 22 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 23 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.11 -0.84 9.67 -39.59 -0.38 -1.22 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.39 6.15 8.49 -40.82 -0.35 5.81 16 31 H 0.40 4.26 8.49 -40.82 -0.35 3.91 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.38 2.34 7.50 45.56 0.34 2.68 16 35 H 0.12 0.71 6.78 -52.49 -0.36 0.36 16 36 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.80 8.04 -52.49 -0.42 0.38 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -34.23 337.52 -9.08 -43.31 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.89 Total: 6.50 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.90 Total: -3.67 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.01 Total: -49.34 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.38 Total: -18.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.23 -9.08 -43.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273547310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.529 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds