Wall clock time and date at job start Tue Mar 31 2020 00:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 H 1.09008 * 109.47304 * 304.99667 * 16 15 14 18 18 O 1.42902 * 109.47328 * 64.99617 * 16 15 14 19 19 C 1.50700 * 109.47144 * 185.00065 * 16 15 14 20 20 C 1.38237 * 119.99696 * 279.71924 * 19 16 15 21 21 C 1.38237 * 119.99918 * 179.78842 * 20 19 16 22 22 C 1.38237 * 119.99685 * 0.44354 * 21 20 19 23 23 C 1.38233 * 120.00341 * 359.81709 * 22 21 20 24 24 C 1.38228 * 120.00326 * 99.99831 * 19 16 15 25 25 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 27 27 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 28 28 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 29 29 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 30 30 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 31 31 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 32 32 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 33 33 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 34 34 H 0.96696 * 113.99765 * 60.00422 * 18 16 15 35 35 H 1.08000 * 119.99803 * 0.02562 * 20 19 16 36 36 H 1.08001 * 120.00058 * 180.28243 * 21 20 19 37 37 H 1.08004 * 119.99387 * 179.82833 * 22 21 20 38 38 H 1.08001 * 120.00144 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00315 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 1 0.5663 -9.5864 0.8479 18 8 0.5090 -9.6940 -1.2146 19 6 2.0001 -10.9979 0.1366 20 6 2.5973 -11.5651 -0.9736 21 6 3.2884 -12.7564 -0.8538 22 6 3.3744 -13.3849 0.3744 23 6 2.7726 -12.8204 1.4834 24 6 2.0853 -11.6270 1.3644 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8713 -3.6047 0.8890 29 1 2.8725 -3.6040 -0.8911 30 1 0.5426 -4.9308 -0.0020 31 1 0.5426 -7.2652 -0.0034 32 1 2.8721 -8.5954 -0.8871 33 1 2.8713 -8.5880 0.8928 34 1 1.0553 -9.7888 -2.0067 35 1 2.5272 -11.0757 -1.9338 36 1 3.7588 -13.1972 -1.7202 37 1 3.9120 -14.3171 0.4674 38 1 2.8395 -13.3118 2.4429 39 1 1.6153 -11.1859 2.2310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273547310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:28 Heat of formation + Delta-G solvation = -94.341906 kcal Electronic energy + Delta-G solvation = -20259.848578 eV Core-core repulsion = 16972.713353 eV Total energy + Delta-G solvation = -3287.135225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.16871 -40.40943 -38.13627 -36.62504 -35.33003 -34.77894 -32.73080 -31.76255 -31.48168 -28.96647 -26.61430 -24.61521 -23.50077 -22.87846 -22.18489 -21.83608 -19.49692 -18.70422 -18.41083 -17.35993 -17.15341 -16.61713 -16.49961 -16.42737 -15.96862 -15.37283 -15.21706 -15.17643 -14.80241 -14.55482 -14.27417 -14.23137 -13.65533 -13.49300 -13.19739 -12.93629 -12.71214 -12.50668 -12.23598 -12.18675 -11.88665 -11.68033 -11.52339 -11.31205 -11.10058 -10.60675 -10.37753 -9.83638 -9.73655 -9.70500 -8.23489 -6.33622 0.35291 0.48967 1.41793 1.42552 1.55791 1.74683 2.15306 2.41917 2.81928 3.11322 3.31263 3.43462 3.68469 3.85159 3.90782 4.14093 4.19085 4.28992 4.47645 4.52507 4.56695 4.60713 4.69595 4.87200 4.88777 5.03558 5.14154 5.31435 5.43427 5.52293 5.54721 5.60256 5.60448 5.61758 5.79633 6.02950 6.08603 6.17933 6.64508 6.79834 7.12055 7.35673 7.58685 8.88671 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050610 B = 0.002389 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.121343 B =11715.949334 C =11878.546366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.728 5.728 15 C 0.117 3.883 16 C 0.154 3.846 17 H 0.123 0.877 18 O -0.559 6.559 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.119 4.119 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.407 0.593 31 H 0.412 0.588 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.387 0.613 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 -27.904 0.130 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.397 3.603 13 O -0.524 6.524 14 N -0.385 5.385 15 C -0.008 4.008 16 C 0.094 3.906 17 H 0.140 0.860 18 O -0.367 6.367 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.242 0.758 31 H 0.249 0.751 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.238 0.762 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.162 -27.720 0.526 27.809 hybrid contribution -0.030 0.963 -0.323 1.016 sum 2.132 -26.757 0.203 26.843 Atomic orbital electron populations 1.70066 1.07526 1.27924 1.51119 1.25883 0.95825 1.03132 0.94465 0.85377 0.78951 0.78711 0.77883 1.18974 1.20224 1.20209 1.21493 0.93605 0.91886 1.51349 0.92292 1.19138 0.94239 0.91662 0.96385 1.21076 0.94619 0.81111 0.99590 1.45216 1.10408 1.04419 1.78700 1.16170 0.85106 0.81299 0.77748 1.90863 1.13764 1.87385 1.60371 1.44826 1.10363 1.03397 1.79917 1.21895 0.94657 0.81681 1.02572 1.20886 0.91992 0.88648 0.89030 0.85957 1.86612 1.38108 1.95983 1.16013 1.20405 1.00354 0.97219 0.94970 1.21179 0.97394 0.96583 0.98695 1.21444 0.98999 0.95476 0.98670 1.21547 0.99257 1.00698 0.92865 1.21466 0.97533 0.95805 0.99852 1.21287 0.99393 0.95892 0.97160 0.92551 0.97281 0.97266 0.93836 0.93852 0.75753 0.75127 0.91870 0.91635 0.76237 0.84713 0.84159 0.84107 0.84127 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.16 7.10 5.61 86.38 0.48 7.59 16 11 N -0.73 -26.32 5.56 -478.52 -2.66 -28.98 16 12 C 0.70 24.62 8.57 179.05 1.53 26.15 16 13 O -0.64 -28.24 16.34 -4.01 -0.07 -28.31 16 14 N -0.73 -17.97 5.51 -478.54 -2.64 -20.60 16 15 C 0.12 2.46 5.29 86.38 0.46 2.92 16 16 C 0.15 2.39 3.24 29.85 0.10 2.49 16 17 H 0.12 1.70 8.00 -2.38 -0.02 1.68 16 18 O -0.56 -8.94 13.13 -148.98 -1.96 -10.90 16 19 C -0.13 -1.99 4.97 -19.87 -0.10 -2.09 16 20 C -0.12 -1.71 9.32 22.27 0.21 -1.50 16 21 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 22 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.12 -1.74 9.67 22.27 0.22 -1.53 16 25 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.41 12.43 8.49 -92.71 -0.79 11.64 16 31 H 0.41 8.09 8.49 -92.71 -0.79 7.30 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.39 4.20 7.50 -74.06 -0.56 3.65 16 35 H 0.14 1.40 6.78 -2.91 -0.02 1.38 16 36 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.14 1.56 8.04 -2.91 -0.02 1.54 16 Total: -1.00 -72.47 337.52 -1.64 -74.11 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -1.05 Total: 21.63 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.41 Total: 1.41 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.01 Total: -103.90 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.02 Total: -39.20 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.47 -1.64 -74.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273547310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.230 kcal (2) G-P(sol) polarization free energy of solvation -72.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds