Wall clock time and date at job start Tue Mar 31 2020 00:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00419 * 3 2 1 5 5 H 1.48491 * 109.47384 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47015 * 120.00526 * 3 2 1 7 7 C 1.37875 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46907 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00048 * 179.97438 * 11 10 9 13 13 O 1.21597 * 119.99936 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00448 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00064 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46937 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.46886 * 60.00211 * 16 15 14 18 18 O 1.42902 * 109.47015 * 300.00031 * 16 15 14 19 19 C 1.50700 * 109.47004 * 180.02562 * 16 15 14 20 20 C 1.38231 * 119.99825 * 84.86843 * 19 16 15 21 21 C 1.38243 * 120.00070 * 180.02562 * 20 19 16 22 22 C 1.38235 * 119.99602 * 0.07188 * 21 20 19 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00292 * 264.99981 * 19 16 15 25 25 H 0.96996 * 120.00025 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47414 * 60.00146 * 9 7 2 27 27 H 1.08999 * 109.47153 * 299.99811 * 9 7 2 28 28 H 1.08997 * 109.47369 * 59.99623 * 10 9 7 29 29 H 1.08999 * 109.46655 * 299.99621 * 10 9 7 30 30 H 0.97002 * 120.00747 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99343 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47160 * 60.00289 * 15 14 12 33 33 H 1.08998 * 109.47148 * 300.00167 * 15 14 12 34 34 H 0.96699 * 114.00101 * 299.99987 * 18 16 15 35 35 H 1.08001 * 120.00367 * 0.10906 * 20 19 16 36 36 H 1.08000 * 119.99728 * 180.34119 * 21 20 19 37 37 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.00350 * 179.97438 * 23 22 21 39 39 H 1.08007 * 119.99474 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.4026 -6.0980 -0.0014 14 7 1.5128 -7.2652 -0.0018 15 6 2.2454 -8.5339 -0.0031 16 6 1.2511 -9.6969 -0.0022 17 1 0.6234 -9.6389 -0.8915 18 8 0.4310 -9.6215 1.1656 19 6 2.0047 -11.0020 -0.0029 20 6 2.4440 -11.5469 1.1891 21 6 3.1357 -12.7439 1.1885 22 6 3.3893 -13.3949 -0.0043 23 6 2.9508 -12.8495 -1.1963 24 6 2.2589 -11.6527 -1.1957 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 0.5428 -4.9309 -0.0011 31 1 0.5428 -7.2652 -0.0010 32 1 2.8727 -8.5921 0.8864 33 1 2.8713 -8.5912 -0.8936 34 1 0.9241 -9.6671 1.9961 35 1 2.2457 -11.0384 2.1210 36 1 3.4741 -13.1724 2.1203 37 1 3.9300 -14.3298 -0.0047 38 1 3.1493 -13.3579 -2.1282 39 1 1.9171 -11.2260 -2.1271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273547312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:31 Heat of formation + Delta-G solvation = -68.575518 kcal Electronic energy + Delta-G solvation = -20267.238140 eV Core-core repulsion = 16981.220230 eV Total energy + Delta-G solvation = -3286.017910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20302 -39.36569 -37.39895 -34.93249 -34.08064 -32.80401 -32.03104 -31.22413 -29.73062 -27.94771 -24.82236 -23.61555 -22.94661 -21.45041 -21.02857 -20.48801 -18.11394 -18.05996 -16.50202 -16.35387 -16.27928 -15.52577 -15.27596 -15.18472 -14.51608 -14.41788 -14.23369 -13.86205 -13.73377 -13.37582 -13.32165 -13.06353 -12.40182 -12.25249 -12.11239 -11.57432 -11.34400 -11.17224 -10.99745 -10.63607 -10.54834 -10.28655 -9.93983 -9.53895 -9.29669 -9.26023 -9.12683 -9.02474 -8.46014 -8.22126 -6.06951 -4.09626 0.92043 1.02918 2.99366 3.33016 3.36635 3.39436 3.41473 3.60718 4.05538 4.24344 4.42618 4.45102 4.55164 4.65614 4.73520 4.81862 4.86235 5.11655 5.19834 5.29942 5.53856 5.57285 5.59514 5.69049 6.06684 6.14230 6.17388 6.32047 6.42328 6.56513 6.60701 6.80184 7.02989 7.19648 7.27204 7.59380 7.66049 7.92191 8.28325 8.46395 8.94889 9.02146 9.54878 11.04679 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051244 B = 0.002392 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.276553 B =11703.140977 C =11879.706080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.698 3.302 13 O -0.600 6.600 14 N -0.749 5.749 15 C 0.116 3.884 16 C 0.138 3.862 17 H 0.115 0.885 18 O -0.550 6.550 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.107 4.107 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.394 0.606 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.377 0.623 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -27.018 0.300 27.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.479 6.479 14 N -0.407 5.407 15 C -0.010 4.010 16 C 0.078 3.922 17 H 0.133 0.867 18 O -0.356 6.356 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.125 4.125 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.227 0.773 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.225 0.775 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.050 -26.806 -0.140 26.885 hybrid contribution 0.029 0.816 0.364 0.894 sum 2.079 -25.990 0.224 26.074 Atomic orbital electron populations 1.69948 1.06078 1.26949 1.50379 1.24999 0.94906 0.99401 0.95034 0.86561 0.79494 0.82632 0.78773 1.20115 1.21277 1.20119 1.21019 0.93229 0.90381 1.51346 0.92278 1.19323 0.94253 0.91053 0.97824 1.21589 0.95640 0.80428 1.00610 1.45524 1.09891 1.05269 1.78430 1.16065 0.85602 0.80509 0.78058 1.90891 1.11811 1.86723 1.58511 1.44974 1.09722 1.04213 1.81771 1.21747 0.94062 0.81929 1.03245 1.21064 0.91377 0.89600 0.90127 0.86731 1.86629 1.36950 1.96243 1.15825 1.20378 0.99822 0.97162 0.94126 1.20900 0.98003 0.96284 0.97475 1.21140 0.98705 0.95356 0.98312 1.21211 0.99809 1.00016 0.92694 1.21169 0.98235 0.95923 0.98295 1.21030 0.98675 0.95309 0.97474 0.92815 0.95957 0.95957 0.92811 0.92816 0.77316 0.76708 0.91428 0.90750 0.77456 0.86026 0.85842 0.85997 0.85821 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.37 5.56 -65.22 -0.36 -13.73 16 12 C 0.70 12.49 8.57 -86.92 -0.74 11.74 16 13 O -0.60 -13.18 16.34 5.28 0.09 -13.09 16 14 N -0.75 -9.67 5.45 -65.22 -0.36 -10.02 16 15 C 0.12 1.27 5.32 -4.04 -0.02 1.25 16 16 C 0.14 1.16 3.30 -27.88 -0.09 1.07 16 17 H 0.12 0.90 8.05 -51.93 -0.42 0.48 16 18 O -0.55 -4.82 12.88 -35.23 -0.45 -5.27 16 19 C -0.11 -0.95 5.00 -104.63 -0.52 -1.47 16 20 C -0.11 -0.84 9.33 -39.58 -0.37 -1.21 16 21 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 22 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 23 C -0.12 -0.86 10.05 -39.59 -0.40 -1.25 16 24 C -0.11 -0.84 9.68 -39.58 -0.38 -1.22 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.39 6.16 8.49 -40.82 -0.35 5.82 16 31 H 0.40 4.29 8.36 -40.82 -0.34 3.95 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.38 2.35 7.39 45.56 0.34 2.69 16 35 H 0.12 0.72 6.61 -52.49 -0.35 0.37 16 36 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -34.11 337.03 -9.08 -43.19 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.89 Total: 6.62 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.90 Total: -3.71 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.02 Total: -49.34 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.37 Total: -18.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.11 -9.08 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273547312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.389 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds