Wall clock time and date at job start Tue Mar 31 2020 00:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00419 * 3 2 1 5 5 H 1.48491 * 109.47384 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47015 * 120.00526 * 3 2 1 7 7 C 1.37875 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46907 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00048 * 179.97438 * 11 10 9 13 13 O 1.21597 * 119.99936 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00448 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00064 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46937 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.46886 * 60.00211 * 16 15 14 18 18 O 1.42902 * 109.47015 * 300.00031 * 16 15 14 19 19 C 1.50700 * 109.47004 * 180.02562 * 16 15 14 20 20 C 1.38231 * 119.99825 * 84.86843 * 19 16 15 21 21 C 1.38243 * 120.00070 * 180.02562 * 20 19 16 22 22 C 1.38235 * 119.99602 * 0.07188 * 21 20 19 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00292 * 264.99981 * 19 16 15 25 25 H 0.96996 * 120.00025 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47414 * 60.00146 * 9 7 2 27 27 H 1.08999 * 109.47153 * 299.99811 * 9 7 2 28 28 H 1.08997 * 109.47369 * 59.99623 * 10 9 7 29 29 H 1.08999 * 109.46655 * 299.99621 * 10 9 7 30 30 H 0.97002 * 120.00747 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99343 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47160 * 60.00289 * 15 14 12 33 33 H 1.08998 * 109.47148 * 300.00167 * 15 14 12 34 34 H 0.96699 * 114.00101 * 299.99987 * 18 16 15 35 35 H 1.08001 * 120.00367 * 0.10906 * 20 19 16 36 36 H 1.08000 * 119.99728 * 180.34119 * 21 20 19 37 37 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.00350 * 179.97438 * 23 22 21 39 39 H 1.08007 * 119.99474 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.4026 -6.0980 -0.0014 14 7 1.5128 -7.2652 -0.0018 15 6 2.2454 -8.5339 -0.0031 16 6 1.2511 -9.6969 -0.0022 17 1 0.6234 -9.6389 -0.8915 18 8 0.4310 -9.6215 1.1656 19 6 2.0047 -11.0020 -0.0029 20 6 2.4440 -11.5469 1.1891 21 6 3.1357 -12.7439 1.1885 22 6 3.3893 -13.3949 -0.0043 23 6 2.9508 -12.8495 -1.1963 24 6 2.2589 -11.6527 -1.1957 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 0.5428 -4.9309 -0.0011 31 1 0.5428 -7.2652 -0.0010 32 1 2.8727 -8.5921 0.8864 33 1 2.8713 -8.5912 -0.8936 34 1 0.9241 -9.6671 1.9961 35 1 2.2457 -11.0384 2.1210 36 1 3.4741 -13.1724 2.1203 37 1 3.9300 -14.3298 -0.0047 38 1 3.1493 -13.3579 -2.1282 39 1 1.9171 -11.2260 -2.1271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273547312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:30 Heat of formation + Delta-G solvation = -93.879312 kcal Electronic energy + Delta-G solvation = -20268.335395 eV Core-core repulsion = 16981.220230 eV Total energy + Delta-G solvation = -3287.115165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17085 -40.41018 -38.14171 -36.62210 -35.31202 -34.77538 -32.74179 -31.75049 -31.48084 -28.97666 -26.61385 -24.59550 -23.49408 -22.87761 -22.17897 -21.83539 -19.49632 -18.72271 -18.40298 -17.35075 -17.16007 -16.60525 -16.50258 -16.43620 -15.96600 -15.37536 -15.21970 -15.18023 -14.80415 -14.54004 -14.26214 -14.22656 -13.66047 -13.48917 -13.20920 -12.90401 -12.69693 -12.52742 -12.21488 -12.17890 -11.88940 -11.68518 -11.52831 -11.32922 -11.11793 -10.59392 -10.37517 -9.83592 -9.72697 -9.70446 -8.22881 -6.33285 0.35434 0.49064 1.42614 1.45256 1.52996 1.74672 2.15402 2.42217 2.82130 3.11742 3.30627 3.43138 3.69444 3.85879 3.90766 4.14037 4.18740 4.29275 4.47705 4.52647 4.57022 4.60975 4.69753 4.87335 4.89017 5.03601 5.14211 5.31454 5.43486 5.52198 5.54880 5.60315 5.60487 5.61896 5.79673 6.03294 6.08718 6.18093 6.63761 6.79700 7.12346 7.35858 7.58863 8.88825 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051244 B = 0.002392 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.276553 B =11703.140977 C =11879.706080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.728 5.728 15 C 0.116 3.884 16 C 0.154 3.846 17 H 0.123 0.877 18 O -0.559 6.559 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.120 4.120 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.407 0.593 31 H 0.412 0.588 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.387 0.613 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -27.861 0.353 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.397 3.603 13 O -0.524 6.524 14 N -0.385 5.385 15 C -0.008 4.008 16 C 0.095 3.905 17 H 0.141 0.859 18 O -0.367 6.367 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.138 4.138 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.242 0.758 31 H 0.249 0.751 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.238 0.762 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.172 -27.700 -0.080 27.785 hybrid contribution -0.034 0.972 0.361 1.037 sum 2.138 -26.729 0.281 26.815 Atomic orbital electron populations 1.70053 1.07531 1.28057 1.50959 1.25883 0.95825 1.03123 0.94431 0.85485 0.78281 0.78067 0.79135 1.19329 1.20600 1.19337 1.21441 0.93613 0.91900 1.51603 0.92264 1.19127 0.94230 0.91647 0.96363 1.21074 0.94619 0.81108 0.99588 1.45216 1.10407 1.04420 1.78700 1.16171 0.85101 0.81300 0.77754 1.90864 1.13764 1.87388 1.60380 1.44808 1.10398 1.03360 1.79903 1.21885 0.94654 0.81696 1.02603 1.20887 0.90679 0.88541 0.90436 0.85917 1.86608 1.37429 1.96170 1.16467 1.20413 1.00621 0.97213 0.94693 1.21171 0.98014 0.96732 0.97946 1.21443 0.98554 0.95311 0.99278 1.21543 0.99547 1.00714 0.92596 1.21462 0.98009 0.95885 0.99280 1.21279 0.98889 0.95759 0.97859 0.92544 0.97286 0.97309 0.93842 0.93840 0.75758 0.75091 0.92019 0.91516 0.76243 0.84705 0.84169 0.84117 0.84134 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.16 7.10 5.61 86.38 0.48 7.59 16 11 N -0.73 -26.33 5.56 -478.53 -2.66 -28.99 16 12 C 0.70 24.61 8.57 179.05 1.53 26.14 16 13 O -0.64 -28.24 16.34 -4.02 -0.07 -28.31 16 14 N -0.73 -17.95 5.45 -478.52 -2.61 -20.56 16 15 C 0.12 2.45 5.32 86.38 0.46 2.91 16 16 C 0.15 2.39 3.30 29.85 0.10 2.48 16 17 H 0.12 1.70 8.05 -2.39 -0.02 1.69 16 18 O -0.56 -8.85 12.88 -148.98 -1.92 -10.77 16 19 C -0.13 -1.99 5.00 -19.87 -0.10 -2.09 16 20 C -0.12 -1.71 9.33 22.27 0.21 -1.51 16 21 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 22 C -0.13 -1.57 10.05 22.27 0.22 -1.34 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.12 -1.75 9.68 22.27 0.22 -1.53 16 25 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.41 12.45 8.49 -92.71 -0.79 11.66 16 31 H 0.41 8.15 8.36 -92.71 -0.78 7.37 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.39 4.21 7.39 -74.06 -0.55 3.67 16 35 H 0.14 1.41 6.61 -2.91 -0.02 1.39 16 36 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -72.23 337.03 -1.55 -73.79 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -1.03 Total: 21.97 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.42 Total: 1.31 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.98 Total: -103.90 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.98 Total: -39.07 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.23 -1.55 -73.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273547312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.093 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds