Wall clock time and date at job start Mon Mar 30 2020 23:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00163 * 2 1 4 4 C 1.50692 * 109.47505 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.00279 * 89.99820 * 4 3 2 6 6 C 1.38234 * 120.00615 * 180.02562 * 5 4 3 7 7 C 1.38239 * 119.99681 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00049 * 179.97438 * 7 6 5 9 9 O 1.45206 * 109.47021 * 90.00000 * 8 7 6 10 10 C 1.34224 * 117.00077 * 180.02562 * 9 8 7 11 11 O 1.20833 * 120.00103 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00302 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47581 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47581 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00020 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00050 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47407 * 89.99921 * 18 16 14 20 20 H 1.48499 * 109.47054 * 209.99937 * 18 16 14 21 21 H 1.48507 * 109.47204 * 329.99684 * 18 16 14 22 22 C 1.38236 * 119.99618 * 0.24824 * 7 6 5 23 23 C 1.38231 * 120.00348 * 359.49741 * 22 7 6 24 24 H 1.09006 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46869 * 299.99250 * 1 2 3 26 26 H 1.08995 * 109.47672 * 59.99779 * 1 2 3 27 27 H 1.09005 * 109.46685 * 59.99947 * 3 2 1 28 28 H 1.08993 * 109.47035 * 300.00678 * 3 2 1 29 29 H 1.08006 * 120.00063 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.00649 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47247 * 330.00049 * 8 7 6 32 32 H 1.09001 * 109.47358 * 209.99475 * 8 7 6 33 33 H 1.09009 * 109.46972 * 299.99362 * 12 10 9 34 34 H 1.08995 * 109.47473 * 59.99636 * 12 10 9 35 35 H 1.09005 * 109.46903 * 300.00018 * 13 12 10 36 36 H 1.09000 * 109.47608 * 59.99121 * 13 12 10 37 37 H 0.97002 * 119.99990 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.99728 * 179.72715 * 22 7 6 39 39 H 1.08001 * 119.99970 * 180.22692 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2010 1.1322 -1.1980 6 6 5.5790 1.0226 -1.1987 7 6 6.2685 0.9668 -0.0018 8 6 7.7707 0.8467 -0.0024 9 8 8.3622 2.1728 -0.0018 10 6 9.7027 2.2421 -0.0028 11 8 10.3601 1.2282 -0.0036 12 6 10.3878 3.5843 -0.0017 13 6 11.9045 3.3828 -0.0038 14 6 12.5897 4.7250 -0.0021 15 1 12.0021 5.6311 -0.0001 16 6 13.9666 4.7961 -0.0030 17 7 14.5644 5.9675 -0.0020 18 14 14.9828 3.2288 -0.0056 19 1 15.2511 2.8151 -1.4064 20 1 16.2700 3.4723 0.6938 21 1 14.2353 2.1529 0.6937 22 6 5.5794 1.0154 1.1956 23 6 4.2019 1.1304 1.1963 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.6624 1.1754 -2.1332 30 1 6.1169 0.9797 -2.1341 31 1 8.0916 0.3061 -0.8928 32 1 8.0923 0.3051 0.8872 33 1 10.0947 4.1426 -0.8909 34 1 10.0961 4.1404 0.8891 35 1 12.1980 2.8243 0.8851 36 1 12.1960 2.8267 -0.8948 37 1 15.5332 6.0175 -0.0023 38 1 6.1177 0.9674 2.1307 39 1 3.6639 1.1721 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292929038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:34 Heat of formation + Delta-G solvation = -138.071757 kcal Electronic energy + Delta-G solvation = -20042.647009 eV Core-core repulsion = 16721.322764 eV Total energy + Delta-G solvation = -3321.324244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58465 -40.47312 -38.62313 -37.61225 -35.63271 -33.89989 -33.35775 -31.96022 -29.74602 -28.32282 -27.10769 -25.26209 -23.77122 -23.62310 -21.85115 -21.44123 -19.36552 -18.40768 -17.81760 -17.76571 -17.32366 -16.99277 -16.92312 -16.30601 -15.92948 -15.89245 -15.19662 -15.10181 -14.80035 -14.38902 -14.23105 -13.88024 -13.81483 -13.45669 -13.13058 -13.06134 -12.92591 -12.32105 -12.25173 -12.08564 -12.07929 -12.01304 -11.80419 -11.67494 -11.47159 -11.39198 -10.78753 -10.65617 -9.90991 -9.81973 -8.31686 -6.35928 0.02895 0.41912 1.19889 1.34714 1.36809 1.50483 1.75496 2.34729 2.62346 3.03638 3.17600 3.57241 3.71995 3.90051 3.97320 4.00938 4.05330 4.26748 4.37736 4.38806 4.40858 4.42076 4.48829 4.57483 4.59058 4.70656 4.85258 4.88413 4.91541 5.07562 5.24178 5.30661 5.36415 5.38963 5.52846 5.55896 5.58947 5.94553 6.19774 6.21482 6.68738 6.79063 7.29168 8.83802 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.054655 B = 0.002430 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.182002 B =11521.441150 C =11707.932688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.101 3.899 4 C -0.093 4.093 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.102 4.102 8 C 0.101 3.899 9 O -0.353 6.353 10 C 0.469 3.531 11 O -0.541 6.541 12 C -0.092 4.092 13 C 0.002 3.998 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.258 1.258 22 C -0.106 4.106 23 C -0.107 4.107 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.136 0.864 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.553 -11.959 -0.003 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.025 3.975 4 C -0.093 4.093 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.102 4.102 8 C 0.028 3.972 9 O -0.270 6.270 10 C 0.315 3.685 11 O -0.431 6.431 12 C -0.129 4.129 13 C -0.036 4.036 14 C -0.570 4.570 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.582 5.582 18 Si 0.764 3.236 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.182 1.182 22 C -0.124 4.124 23 C -0.124 4.124 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -29.125 -12.368 -0.001 31.642 hybrid contribution 0.805 -0.271 -0.016 0.850 sum -28.320 -12.639 -0.017 31.012 Atomic orbital electron populations 1.22946 0.79254 1.03808 1.01141 1.87930 1.21551 1.28145 1.95661 1.21433 0.88535 0.85021 1.02486 1.19955 0.95299 1.00443 0.93634 1.21278 0.93748 0.98821 0.98595 1.21280 0.94794 0.98552 0.97807 1.19605 0.92705 1.03125 0.94760 1.21940 0.89690 0.81833 1.03719 1.86602 1.22073 1.34480 1.83877 1.24345 0.80453 0.92967 0.70762 1.90615 1.66534 1.38838 1.47069 1.21347 0.94901 0.90238 1.06416 1.19329 0.91408 0.95704 0.97158 1.21338 0.92101 0.92717 1.50814 0.93059 1.25812 0.99323 0.99146 0.94140 1.70021 1.10215 1.25835 1.52142 0.85811 0.78193 0.80389 0.79231 1.19249 1.20446 1.18200 1.21280 0.94808 0.98562 0.97794 1.21280 0.93748 0.98807 0.98604 0.88821 0.92877 0.92867 0.90874 0.90882 0.83811 0.84628 0.90100 0.90121 0.86840 0.86856 0.96398 0.96504 0.92297 0.84634 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.69 10.69 -148.98 -1.59 -8.28 16 3 C 0.10 1.33 6.06 71.23 0.43 1.76 16 4 C -0.09 -1.62 5.51 -19.87 -0.11 -1.73 16 5 C -0.11 -1.88 9.70 22.27 0.22 -1.66 16 6 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 7 C -0.10 -2.29 5.52 -19.86 -0.11 -2.40 16 8 C 0.10 2.61 5.59 71.24 0.40 3.01 16 9 O -0.35 -10.95 10.20 -51.35 -0.52 -11.48 16 10 C 0.47 17.10 7.96 71.23 0.57 17.67 16 11 O -0.54 -22.65 15.73 21.94 0.35 -22.31 16 12 C -0.09 -3.51 5.75 29.85 0.17 -3.34 16 13 C 0.00 0.08 3.33 29.85 0.10 0.18 16 14 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 15 H 0.05 3.09 7.99 -2.91 -0.02 3.06 16 16 C 0.01 0.81 5.47 84.65 0.46 1.27 16 17 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 18 Si 0.94 45.68 27.47 68.60 1.88 47.57 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 22 C -0.11 -2.14 9.70 22.27 0.22 -1.93 16 23 C -0.11 -1.88 9.70 22.27 0.22 -1.66 16 24 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 28 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 29 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.08 2.01 8.08 -2.39 -0.02 2.00 16 32 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 33 H 0.11 4.00 8.14 -2.38 -0.02 3.98 16 34 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.02 0.88 7.15 -2.38 -0.02 0.87 16 36 H 0.02 0.82 7.53 -2.39 -0.02 0.80 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -70.79 339.72 5.65 -65.14 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.97 Total: 6.80 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.27 Total: -19.30 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.15 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.77 Total: -42.07 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.57 kcal Total: -70.79 5.65 -65.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292929038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.929 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds