Wall clock time and date at job start Tue Mar 31 2020 00:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00346 * 2 1 4 4 H 1.48501 * 109.46869 * 269.99959 * 3 2 1 5 5 H 1.48499 * 109.47194 * 29.99563 * 3 2 1 6 6 H 1.48496 * 109.47446 * 150.00140 * 3 2 1 7 7 C 1.37882 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46942 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00068 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99953 * 5.13970 * 12 11 10 14 14 N 1.34778 * 120.00389 * 185.13177 * 12 11 10 15 15 C 1.45175 * 119.56166 * 175.11477 * 14 12 11 16 16 C 1.51624 * 114.57675 * 111.60564 * 15 14 12 17 17 C 1.53603 * 110.74334 * 67.09508 * 16 15 14 18 18 C 1.51344 * 107.60367 * 278.50017 * 17 16 15 19 19 O 1.33888 * 127.35800 * 246.17996 * 18 17 16 20 20 C 1.34584 * 109.42195 * 178.55141 * 19 18 17 21 21 C 1.34922 * 108.48347 * 0.58550 * 20 19 18 22 22 C 1.34504 * 124.63404 * 65.72234 * 18 17 16 23 23 C 1.47334 * 119.55526 * 355.09818 * 14 12 11 24 24 H 0.97009 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46748 * 60.00005 * 9 7 2 26 26 H 1.08997 * 109.46733 * 300.00053 * 9 7 2 27 27 H 1.08999 * 109.46760 * 60.00277 * 10 9 7 28 28 H 1.08996 * 109.47103 * 300.00294 * 10 9 7 29 29 H 0.97008 * 119.99914 * 0.02562 * 11 10 9 30 30 H 1.08991 * 108.46644 * 350.27981 * 15 14 12 31 31 H 1.09006 * 108.33457 * 232.82369 * 15 14 12 32 32 H 1.09007 * 109.22319 * 306.76852 * 16 15 14 33 33 H 1.09005 * 109.22727 * 187.42370 * 16 15 14 34 34 H 1.09003 * 109.84208 * 38.04241 * 17 16 15 35 35 H 1.09001 * 109.84723 * 158.95826 * 17 16 15 36 36 H 1.08011 * 125.75401 * 180.58500 * 20 19 18 37 37 H 1.07999 * 126.82863 * 180.10014 * 21 20 19 38 38 H 1.08998 * 109.96409 * 17.33849 * 23 14 12 39 39 H 1.09006 * 109.96005 * 138.54256 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5126 -4.9308 0.0033 12 6 2.1864 -6.0980 0.0037 13 8 3.3987 -6.1001 0.0979 14 7 1.5166 -7.2629 -0.1003 15 6 2.2564 -8.5075 -0.2061 16 6 2.1364 -9.4171 1.0010 17 6 0.7031 -9.9518 1.1390 18 6 -0.1219 -8.8798 1.8179 19 8 -0.6868 -8.9355 3.0305 20 6 -1.3104 -7.7709 3.2875 21 6 -1.1563 -6.9587 2.2212 22 6 -0.4044 -7.6788 1.2823 23 6 0.0433 -7.2562 -0.1045 24 1 -0.4850 0.8402 -0.0004 25 1 0.6239 -2.5574 -0.8880 26 1 0.6246 -2.5562 0.8920 27 1 2.8717 -3.6036 0.8927 28 1 2.8718 -3.6052 -0.8872 29 1 0.5425 -4.9308 0.0026 30 1 3.3097 -8.2713 -0.3570 31 1 1.8961 -9.0472 -1.0820 32 1 2.3989 -8.8580 1.8992 33 1 2.8231 -10.2561 0.8880 34 1 0.2916 -10.1661 0.1527 35 1 0.7028 -10.8579 1.7448 36 1 -1.8443 -7.5276 4.1944 37 1 -1.5365 -5.9537 2.1127 38 1 -0.3237 -6.2538 -0.3247 39 1 -0.3299 -7.9605 -0.8482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293196919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:44 Heat of formation + Delta-G solvation = -14.800297 kcal Electronic energy + Delta-G solvation = -21720.036507 eV Core-core repulsion = 18436.350465 eV Total energy + Delta-G solvation = -3283.686042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.77412 -39.94897 -36.87437 -34.91750 -33.87944 -32.95958 -32.65382 -30.35237 -29.36644 -26.34587 -25.89910 -24.51846 -22.37427 -21.48541 -20.89878 -19.97456 -19.28862 -17.82085 -17.43959 -16.42165 -16.05928 -15.84478 -15.23054 -14.86314 -14.66661 -14.45664 -13.90256 -13.82233 -13.60996 -13.16609 -12.86238 -12.80485 -12.62488 -12.27410 -11.85508 -11.70751 -11.44834 -11.16953 -11.02292 -10.97706 -10.61280 -10.30096 -9.96959 -9.73273 -9.51234 -9.24112 -8.78386 -8.46890 -8.37711 -8.15758 -6.07752 -4.10074 1.63283 2.43649 2.87113 3.08717 3.30797 3.36894 3.41705 3.57440 4.27270 4.45983 4.49997 4.67139 4.73349 4.77569 4.82418 5.15015 5.22426 5.29526 5.33345 5.37582 5.50115 5.59588 5.72446 5.80850 5.94595 6.04423 6.10466 6.28995 6.42893 6.45025 6.70147 6.80149 7.04056 7.05839 7.18827 7.57580 7.65305 7.91543 8.26678 8.39477 8.94380 9.01387 9.54564 11.03963 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.003946 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.580744 B = 7093.324695 C = 7886.145990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.139 3.861 11 N -0.737 5.737 12 C 0.702 3.298 13 O -0.596 6.596 14 N -0.627 5.627 15 C 0.127 3.873 16 C -0.134 4.134 17 C -0.035 4.035 18 C -0.004 4.004 19 O -0.174 6.174 20 C -0.052 4.052 21 C -0.188 4.188 22 C -0.202 4.202 23 C 0.181 3.819 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.392 0.608 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.202 0.798 37 H 0.153 0.847 38 H 0.091 0.909 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 -20.880 1.899 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.392 5.392 12 C 0.404 3.596 13 O -0.475 6.475 14 N -0.364 5.364 15 C 0.003 3.997 16 C -0.172 4.172 17 C -0.073 4.073 18 C -0.056 4.056 19 O -0.070 6.070 20 C -0.119 4.119 21 C -0.207 4.207 22 C -0.204 4.204 23 C 0.058 3.942 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.228 0.772 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.219 0.781 37 H 0.171 0.829 38 H 0.109 0.891 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.114 -20.963 2.120 21.299 hybrid contribution -0.357 1.246 0.180 1.308 sum -3.470 -19.717 2.300 20.152 Atomic orbital electron populations 1.69957 1.06088 1.26809 1.50526 1.24986 0.94880 0.99363 0.95014 0.86517 0.79868 0.83019 0.78187 1.20568 1.21196 1.19716 1.21055 0.93273 0.90353 1.51173 0.92228 1.19316 0.94250 0.91102 0.97724 1.21595 0.95673 0.80518 1.00612 1.45690 1.09888 1.05319 1.78314 1.16013 0.85335 0.80595 0.77690 1.90867 1.12114 1.86210 1.58287 1.46959 1.05359 1.05511 1.78582 1.20650 0.98843 0.83841 0.96412 1.21833 0.95019 0.99838 1.00545 1.20459 0.93136 0.94226 0.99436 1.22462 1.00253 0.98146 0.84695 1.83928 1.54310 1.36411 1.32368 1.24119 1.02498 0.83924 1.01403 1.21516 1.03659 1.01534 0.94009 1.20623 1.05064 0.95179 0.99562 1.20185 0.79806 1.02513 0.91698 0.92894 0.96021 0.96034 0.92776 0.92845 0.77222 0.88758 0.91962 0.91029 0.89619 0.88894 0.89958 0.78103 0.82923 0.89088 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 11 N -0.74 -13.79 5.44 -65.23 -0.36 -14.14 16 12 C 0.70 13.03 8.25 -86.92 -0.72 12.31 16 13 O -0.60 -13.20 15.64 5.28 0.08 -13.12 16 14 N -0.63 -8.77 2.67 -181.40 -0.48 -9.25 16 15 C 0.13 1.44 5.64 -5.45 -0.03 1.41 16 16 C -0.13 -1.27 5.80 -27.11 -0.16 -1.43 16 17 C -0.04 -0.30 5.89 -27.25 -0.16 -0.46 16 18 C 0.00 -0.05 6.52 -35.31 -0.23 -0.28 16 19 O -0.17 -2.13 10.65 6.04 0.06 -2.07 16 20 C -0.05 -0.58 12.10 29.56 0.36 -0.22 16 21 C -0.19 -2.28 10.92 -40.02 -0.44 -2.72 16 22 C -0.20 -2.48 5.70 -104.70 -0.60 -3.08 16 23 C 0.18 2.09 6.10 -4.23 -0.03 2.07 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.39 6.49 5.93 -40.82 -0.24 6.25 16 30 H 0.09 1.26 6.85 -51.93 -0.36 0.90 16 31 H 0.06 0.54 8.03 -51.93 -0.42 0.13 16 32 H 0.07 0.88 7.90 -51.92 -0.41 0.47 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.63 7.93 -51.93 -0.41 0.21 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.20 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.05 5.71 -51.93 -0.30 0.76 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -33.77 322.23 -8.17 -41.95 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.48 Total: 3.19 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.57 Total: -2.44 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.10 Total: -48.85 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.15 Total: -15.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.77 -8.17 -41.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293196919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds