Wall clock time and date at job start Tue Mar 31 2020 00:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00346 * 2 1 4 4 H 1.48501 * 109.46869 * 269.99959 * 3 2 1 5 5 H 1.48499 * 109.47194 * 29.99563 * 3 2 1 6 6 H 1.48496 * 109.47446 * 150.00140 * 3 2 1 7 7 C 1.37882 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46942 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00068 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99953 * 5.13970 * 12 11 10 14 14 N 1.34778 * 120.00389 * 185.13177 * 12 11 10 15 15 C 1.45175 * 119.56166 * 175.11477 * 14 12 11 16 16 C 1.51624 * 114.57675 * 111.60564 * 15 14 12 17 17 C 1.53603 * 110.74334 * 67.09508 * 16 15 14 18 18 C 1.51344 * 107.60367 * 278.50017 * 17 16 15 19 19 O 1.33888 * 127.35800 * 246.17996 * 18 17 16 20 20 C 1.34584 * 109.42195 * 178.55141 * 19 18 17 21 21 C 1.34922 * 108.48347 * 0.58550 * 20 19 18 22 22 C 1.34504 * 124.63404 * 65.72234 * 18 17 16 23 23 C 1.47334 * 119.55526 * 355.09818 * 14 12 11 24 24 H 0.97009 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46748 * 60.00005 * 9 7 2 26 26 H 1.08997 * 109.46733 * 300.00053 * 9 7 2 27 27 H 1.08999 * 109.46760 * 60.00277 * 10 9 7 28 28 H 1.08996 * 109.47103 * 300.00294 * 10 9 7 29 29 H 0.97008 * 119.99914 * 0.02562 * 11 10 9 30 30 H 1.08991 * 108.46644 * 350.27981 * 15 14 12 31 31 H 1.09006 * 108.33457 * 232.82369 * 15 14 12 32 32 H 1.09007 * 109.22319 * 306.76852 * 16 15 14 33 33 H 1.09005 * 109.22727 * 187.42370 * 16 15 14 34 34 H 1.09003 * 109.84208 * 38.04241 * 17 16 15 35 35 H 1.09001 * 109.84723 * 158.95826 * 17 16 15 36 36 H 1.08011 * 125.75401 * 180.58500 * 20 19 18 37 37 H 1.07999 * 126.82863 * 180.10014 * 21 20 19 38 38 H 1.08998 * 109.96409 * 17.33849 * 23 14 12 39 39 H 1.09006 * 109.96005 * 138.54256 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 7 1.5126 -4.9308 0.0033 12 6 2.1864 -6.0980 0.0037 13 8 3.3987 -6.1001 0.0979 14 7 1.5166 -7.2629 -0.1003 15 6 2.2564 -8.5075 -0.2061 16 6 2.1364 -9.4171 1.0010 17 6 0.7031 -9.9518 1.1390 18 6 -0.1219 -8.8798 1.8179 19 8 -0.6868 -8.9355 3.0305 20 6 -1.3104 -7.7709 3.2875 21 6 -1.1563 -6.9587 2.2212 22 6 -0.4044 -7.6788 1.2823 23 6 0.0433 -7.2562 -0.1045 24 1 -0.4850 0.8402 -0.0004 25 1 0.6239 -2.5574 -0.8880 26 1 0.6246 -2.5562 0.8920 27 1 2.8717 -3.6036 0.8927 28 1 2.8718 -3.6052 -0.8872 29 1 0.5425 -4.9308 0.0026 30 1 3.3097 -8.2713 -0.3570 31 1 1.8961 -9.0472 -1.0820 32 1 2.3989 -8.8580 1.8992 33 1 2.8231 -10.2561 0.8880 34 1 0.2916 -10.1661 0.1527 35 1 0.7028 -10.8579 1.7448 36 1 -1.8443 -7.5276 4.1944 37 1 -1.5365 -5.9537 2.1127 38 1 -0.3237 -6.2538 -0.3247 39 1 -0.3299 -7.9605 -0.8482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293196919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:41 Heat of formation + Delta-G solvation = -36.472836 kcal Electronic energy + Delta-G solvation = -21720.976299 eV Core-core repulsion = 18436.350465 eV Total energy + Delta-G solvation = -3284.625833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.65047 -41.30074 -38.02887 -36.62910 -35.13706 -34.40130 -33.93301 -31.59720 -30.89681 -27.55321 -26.91741 -26.15736 -23.59202 -22.64548 -22.42286 -21.01719 -20.47207 -19.08057 -18.51252 -18.29540 -17.20194 -16.95474 -16.66060 -16.49853 -15.76454 -15.62034 -15.32632 -15.21957 -14.68882 -14.31192 -14.26761 -14.01820 -13.77119 -13.55112 -13.22701 -12.94002 -12.72435 -12.53176 -12.50506 -12.28068 -12.18543 -11.87944 -11.64870 -11.47521 -11.19170 -10.70920 -10.60448 -10.20287 -9.59050 -9.21498 -8.24009 -6.34362 0.76666 1.41535 1.42637 1.45429 1.54370 1.89638 2.06075 2.14114 2.41298 3.01651 3.10828 3.73597 3.82313 3.87558 3.97034 4.04261 4.37648 4.41086 4.42398 4.49787 4.54110 4.55839 4.78705 4.80819 4.83946 4.90569 4.97222 5.08736 5.22573 5.29597 5.32214 5.48568 5.56519 5.57628 5.65015 5.79108 5.90417 6.16711 6.20559 6.78107 6.94740 7.34887 7.54642 8.87996 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.003946 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.580744 B = 7093.324695 C = 7886.145990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.697 3.303 13 O -0.637 6.637 14 N -0.617 5.617 15 C 0.118 3.882 16 C -0.124 4.124 17 C -0.031 4.031 18 C -0.011 4.011 19 O -0.185 6.185 20 C -0.051 4.051 21 C -0.215 4.215 22 C -0.222 4.222 23 C 0.180 3.820 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.006 0.994 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.403 0.597 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.037 0.963 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -22.237 1.571 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.011 4.011 10 C 0.035 3.965 11 N -0.390 5.390 12 C 0.399 3.601 13 O -0.520 6.520 14 N -0.353 5.353 15 C -0.005 4.005 16 C -0.163 4.163 17 C -0.068 4.068 18 C -0.062 4.062 19 O -0.081 6.081 20 C -0.118 4.118 21 C -0.234 4.234 22 C -0.225 4.225 23 C 0.058 3.942 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.240 0.760 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.119 0.881 36 H 0.248 0.752 37 H 0.170 0.830 38 H 0.104 0.896 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.455 -22.372 1.788 22.708 hybrid contribution -0.312 1.601 0.306 1.659 sum -3.768 -20.772 2.093 21.214 Atomic orbital electron populations 1.70058 1.07524 1.27993 1.50949 1.25851 0.95787 1.03011 0.94321 0.85445 0.78601 0.78426 0.78582 1.19635 1.20453 1.19171 1.21447 0.93571 0.91858 1.51662 0.92360 1.19105 0.94155 0.91645 0.96224 1.21082 0.94679 0.81238 0.99459 1.45417 1.10275 1.04603 1.78735 1.16185 0.84933 0.81523 0.77491 1.90832 1.14008 1.86977 1.60141 1.47041 1.06541 1.04797 1.76884 1.20960 0.97448 0.83140 0.98980 1.21772 0.96698 0.99950 0.97876 1.20630 0.91561 0.93758 1.00829 1.23095 0.99906 0.98803 0.84407 1.83940 1.54518 1.36865 1.32753 1.24713 1.01793 0.83264 1.02027 1.21734 1.04737 1.02002 0.94944 1.20774 1.05884 0.95821 0.99985 1.20406 0.77959 1.03317 0.92509 0.92523 0.97190 0.97613 0.94307 0.93595 0.75967 0.91134 0.88148 0.94449 0.86507 0.86243 0.88057 0.75186 0.83012 0.89628 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.36 5.09 29.85 0.15 1.51 16 10 C 0.16 7.29 5.62 86.38 0.49 7.78 16 11 N -0.73 -28.04 5.44 -478.54 -2.60 -30.65 16 12 C 0.70 26.16 8.25 179.06 1.48 27.63 16 13 O -0.64 -28.94 15.64 -4.01 -0.06 -29.01 16 14 N -0.62 -16.65 2.67 -846.09 -2.26 -18.91 16 15 C 0.12 2.46 5.64 86.18 0.49 2.94 16 16 C -0.12 -2.08 5.80 30.35 0.18 -1.91 16 17 C -0.03 -0.42 5.89 30.26 0.18 -0.24 16 18 C -0.01 -0.23 6.52 25.04 0.16 -0.07 16 19 O -0.18 -4.26 10.65 -1.31 -0.01 -4.27 16 20 C -0.05 -1.08 12.10 67.06 0.81 -0.26 16 21 C -0.21 -5.15 10.92 21.98 0.24 -4.91 16 22 C -0.22 -5.21 5.70 -19.91 -0.11 -5.33 16 23 C 0.18 3.88 6.10 85.80 0.52 4.40 16 24 H 0.27 14.69 8.31 -92.70 -0.77 13.91 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.40 13.58 5.93 -92.70 -0.55 13.03 16 30 H 0.07 1.85 6.85 -2.39 -0.02 1.83 16 31 H 0.10 1.37 8.03 -2.38 -0.02 1.35 16 32 H 0.04 0.89 7.90 -2.38 -0.02 0.87 16 33 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.12 1.04 7.93 -2.39 -0.02 1.02 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.23 3.04 8.06 -2.90 -0.02 3.02 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.09 1.92 5.71 -2.39 -0.01 1.91 16 39 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -74.12 322.23 3.15 -70.97 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.51 Total: 18.45 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.27 Total: 1.66 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.58 Total: -103.80 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.08 Total: -33.28 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.12 3.15 -70.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293196919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.495 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds