Wall clock time and date at job start Tue Mar 31 2020 00:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48492 * 109.47596 * 240.00436 * 3 2 1 5 5 H 1.48497 * 109.47118 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46820 * 120.00264 * 3 2 1 7 7 C 1.37877 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46914 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99680 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47129 * 179.97438 * 14 13 11 16 16 N 1.30696 * 127.01630 * 270.03909 * 15 14 13 17 17 O 1.21459 * 111.68839 * 179.68145 * 16 15 14 18 18 C 1.33171 * 111.27215 * 0.36056 * 17 16 15 19 19 C 1.35507 * 106.45661 * 359.72166 * 18 17 16 20 20 C 1.50084 * 124.85967 * 180.02562 * 19 18 17 21 21 C 1.53538 * 108.23007 * 343.84850 * 20 19 18 22 22 C 1.53098 * 109.53557 * 49.25608 * 21 20 19 23 23 C 1.50566 * 129.73005 * 179.97438 * 18 17 16 24 24 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46893 * 60.00256 * 9 7 2 26 26 H 1.09006 * 109.47003 * 300.00242 * 9 7 2 27 27 H 1.08997 * 109.47165 * 60.00378 * 10 9 7 28 28 H 1.08996 * 109.47410 * 300.00064 * 10 9 7 29 29 H 0.96996 * 120.00059 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47576 * 59.99619 * 14 13 11 31 31 H 1.08996 * 109.46990 * 299.99735 * 14 13 11 32 32 H 1.09000 * 109.71286 * 224.16172 * 20 19 18 33 33 H 1.09000 * 109.74374 * 103.55399 * 20 19 18 34 34 H 1.08996 * 109.46194 * 289.23151 * 21 20 19 35 35 H 1.09006 * 109.45734 * 169.27276 * 21 20 19 36 36 H 1.09000 * 109.43123 * 170.03773 * 22 21 20 37 37 H 1.08999 * 109.38761 * 50.17699 * 22 21 20 38 38 H 1.09000 * 109.69332 * 282.69287 * 23 18 17 39 39 H 1.09002 * 109.69408 * 43.24568 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1655 -6.1344 0.0007 14 6 1.4330 -7.4031 0.0008 15 6 2.4123 -8.5486 0.0009 16 7 2.9242 -9.1463 -1.0426 17 8 3.6899 -10.0327 -0.7214 18 6 3.7767 -10.1398 0.6031 19 6 2.9603 -9.1896 1.1194 20 6 2.7467 -8.9460 2.5849 21 6 3.2601 -10.1710 3.3552 22 6 4.6663 -10.5298 2.8677 23 6 4.5931 -11.0882 1.4405 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 3.1355 -6.1345 0.0004 30 1 0.8067 -7.4612 -0.8894 31 1 0.8060 -7.4606 0.8905 32 1 1.6841 -8.8058 2.7833 33 1 3.2987 -8.0588 2.8950 34 1 2.5905 -11.0140 3.1847 35 1 3.2923 -9.9427 4.4206 36 1 5.0988 -11.2806 3.5291 37 1 5.2910 -9.6367 2.8760 38 1 4.1175 -12.0688 1.4540 39 1 5.5976 -11.1728 1.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293231014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:44 Heat of formation + Delta-G solvation = -3.493041 kcal Electronic energy + Delta-G solvation = -20875.206824 eV Core-core repulsion = 17592.011102 eV Total energy + Delta-G solvation = -3283.195722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.23257 -39.17431 -38.03761 -35.59122 -33.44471 -33.19680 -31.24495 -30.99623 -30.58696 -27.65280 -25.30582 -24.70143 -23.11641 -21.82531 -21.17279 -19.87162 -19.52676 -17.88179 -17.51984 -16.81197 -15.87115 -15.59745 -15.43121 -15.11783 -14.41871 -14.37881 -14.32751 -14.05580 -13.63266 -13.26980 -13.07778 -12.81599 -12.75835 -12.16220 -12.03138 -11.49798 -11.39465 -11.33556 -11.16237 -11.00670 -10.89968 -10.62199 -10.39385 -9.94620 -9.66514 -9.31211 -9.18432 -9.01899 -8.86741 -8.30691 -5.94918 -3.99418 1.18274 1.84112 2.73212 3.22433 3.35371 3.39839 3.41520 3.60668 3.92307 4.11133 4.31616 4.36797 4.48675 4.61239 4.65210 4.81666 4.99944 5.07235 5.17399 5.28481 5.32932 5.39857 5.47059 5.51432 5.58247 5.65717 5.69037 5.76771 5.82959 5.92810 6.22825 6.24812 6.59591 6.89110 7.74959 7.82642 7.87249 8.00238 8.08231 8.39394 8.73562 9.08802 9.63964 11.16035 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030382 B = 0.002955 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.370920 B = 9474.190708 C = 9703.670115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.532 6.532 13 N -0.739 5.739 14 C 0.201 3.799 15 C 0.014 3.986 16 N -0.353 5.353 17 O 0.111 5.889 18 C -0.039 4.039 19 C -0.188 4.188 20 C -0.048 4.048 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.036 4.036 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.398 0.602 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.920 -25.178 6.588 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.301 3.699 12 O -0.407 6.407 13 N -0.394 5.394 14 C 0.077 3.923 15 C -0.143 4.143 16 N -0.057 5.057 17 O 0.044 5.956 18 C -0.103 4.103 19 C -0.193 4.193 20 C -0.085 4.085 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.074 4.074 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.685 -24.876 5.251 27.206 hybrid contribution 0.853 0.912 0.609 1.390 sum 10.538 -23.964 5.861 26.826 Atomic orbital electron populations 1.69988 1.06053 1.26706 1.50098 1.25025 0.94833 0.99221 0.95296 0.86642 0.79537 0.83150 0.78542 1.20251 1.21278 1.20250 1.21188 0.92900 0.91023 1.51531 0.92655 1.18901 0.93154 0.89296 0.98670 1.21873 1.00750 0.91644 1.02580 1.21609 0.88661 0.85349 0.74260 1.90679 1.14382 1.87494 1.48162 1.46178 1.10142 1.04770 1.78338 1.19337 0.90613 0.78582 1.03781 1.23111 1.01749 1.00657 0.88830 1.74331 1.06096 1.01699 1.23557 1.84748 1.47443 1.41157 1.22273 1.24149 1.01501 1.00893 0.83780 1.20696 1.01621 0.99049 0.97895 1.19992 1.02477 0.98880 0.87190 1.21675 0.96328 0.97893 1.00062 1.21641 0.97885 1.01942 0.94117 1.20234 0.98784 0.95861 0.92489 0.92883 0.95777 0.95765 0.90157 0.90171 0.76816 0.90056 0.89486 0.89951 0.89852 0.91392 0.90606 0.90129 0.90958 0.88920 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 11 C 0.51 10.08 7.83 -10.98 -0.09 10.00 16 12 O -0.53 -12.69 15.98 5.55 0.09 -12.60 16 13 N -0.74 -11.13 5.55 -61.47 -0.34 -11.47 16 14 C 0.20 2.80 6.25 -5.19 -0.03 2.77 16 15 C 0.01 0.18 6.69 -82.38 -0.55 -0.37 16 16 N -0.35 -4.79 12.10 33.47 0.41 -4.39 16 17 O 0.11 1.28 11.20 19.23 0.22 1.50 16 18 C -0.04 -0.35 7.39 -35.35 -0.26 -0.61 16 19 C -0.19 -1.90 6.05 -105.21 -0.64 -2.54 16 20 C -0.05 -0.38 6.29 -27.90 -0.18 -0.55 16 21 C -0.12 -0.66 5.91 -26.40 -0.16 -0.82 16 22 C -0.12 -0.53 5.88 -26.46 -0.16 -0.69 16 23 C -0.04 -0.18 6.31 -27.72 -0.17 -0.36 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.40 5.12 8.46 -40.82 -0.35 4.77 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -34.91 330.41 -7.65 -42.56 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.80 Total: -1.55 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.92 Total: -8.93 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.80 Total: -42.77 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.30 Total: -11.10 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.91 -7.65 -42.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293231014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.071 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds