Wall clock time and date at job start Tue Mar 31 2020 00:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48492 * 109.47596 * 240.00436 * 3 2 1 5 5 H 1.48497 * 109.47118 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46820 * 120.00264 * 3 2 1 7 7 C 1.37877 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46914 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99680 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47129 * 179.97438 * 14 13 11 16 16 N 1.30696 * 127.01630 * 270.03909 * 15 14 13 17 17 O 1.21459 * 111.68839 * 179.68145 * 16 15 14 18 18 C 1.33171 * 111.27215 * 0.36056 * 17 16 15 19 19 C 1.35507 * 106.45661 * 359.72166 * 18 17 16 20 20 C 1.50084 * 124.85967 * 180.02562 * 19 18 17 21 21 C 1.53538 * 108.23007 * 343.84850 * 20 19 18 22 22 C 1.53098 * 109.53557 * 49.25608 * 21 20 19 23 23 C 1.50566 * 129.73005 * 179.97438 * 18 17 16 24 24 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46893 * 60.00256 * 9 7 2 26 26 H 1.09006 * 109.47003 * 300.00242 * 9 7 2 27 27 H 1.08997 * 109.47165 * 60.00378 * 10 9 7 28 28 H 1.08996 * 109.47410 * 300.00064 * 10 9 7 29 29 H 0.96996 * 120.00059 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47576 * 59.99619 * 14 13 11 31 31 H 1.08996 * 109.46990 * 299.99735 * 14 13 11 32 32 H 1.09000 * 109.71286 * 224.16172 * 20 19 18 33 33 H 1.09000 * 109.74374 * 103.55399 * 20 19 18 34 34 H 1.08996 * 109.46194 * 289.23151 * 21 20 19 35 35 H 1.09006 * 109.45734 * 169.27276 * 21 20 19 36 36 H 1.09000 * 109.43123 * 170.03773 * 22 21 20 37 37 H 1.08999 * 109.38761 * 50.17699 * 22 21 20 38 38 H 1.09000 * 109.69332 * 282.69287 * 23 18 17 39 39 H 1.09002 * 109.69408 * 43.24568 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1655 -6.1344 0.0007 14 6 1.4330 -7.4031 0.0008 15 6 2.4123 -8.5486 0.0009 16 7 2.9242 -9.1463 -1.0426 17 8 3.6899 -10.0327 -0.7214 18 6 3.7767 -10.1398 0.6031 19 6 2.9603 -9.1896 1.1194 20 6 2.7467 -8.9460 2.5849 21 6 3.2601 -10.1710 3.3552 22 6 4.6663 -10.5298 2.8677 23 6 4.5931 -11.0882 1.4405 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 3.1355 -6.1345 0.0004 30 1 0.8067 -7.4612 -0.8894 31 1 0.8060 -7.4606 0.8905 32 1 1.6841 -8.8058 2.7833 33 1 3.2987 -8.0588 2.8950 34 1 2.5905 -11.0140 3.1847 35 1 3.2923 -9.9427 4.4206 36 1 5.0988 -11.2806 3.5291 37 1 5.2910 -9.6367 2.8760 38 1 4.1175 -12.0688 1.4540 39 1 5.5976 -11.1728 1.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293231014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:43 Heat of formation + Delta-G solvation = -26.892474 kcal Electronic energy + Delta-G solvation = -20876.221500 eV Core-core repulsion = 17592.011102 eV Total energy + Delta-G solvation = -3284.210398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.12157 -40.76670 -38.61025 -36.78390 -35.56855 -34.36695 -32.98777 -31.88390 -31.21442 -29.11127 -27.14256 -25.33373 -23.74310 -23.64222 -22.17187 -21.33728 -20.32555 -18.94685 -18.72365 -18.28035 -17.45951 -17.04121 -16.71726 -16.41885 -16.08261 -15.13032 -14.97034 -14.81176 -14.74929 -14.47264 -14.19785 -14.15374 -13.89611 -13.58968 -13.25813 -13.23036 -12.78176 -12.51982 -12.24465 -11.93306 -11.85791 -11.82185 -11.66263 -11.50715 -11.37145 -11.30088 -10.72796 -10.56846 -10.26375 -10.04291 -8.18292 -6.32576 0.36641 0.94218 1.41977 1.46575 1.54337 1.62014 2.02895 2.27501 2.45013 2.93537 3.14562 3.38143 3.70966 3.91589 3.95512 3.99285 4.11321 4.28162 4.34548 4.44033 4.49362 4.53419 4.55589 4.59409 4.63027 4.91900 4.96345 5.02197 5.03737 5.18985 5.19885 5.23872 5.35520 5.45023 5.49115 5.61871 5.84463 6.16703 6.43839 6.85223 7.15366 7.20798 7.37598 8.94236 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030382 B = 0.002955 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.370920 B = 9474.190708 C = 9703.670115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.118 4.118 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.714 5.714 14 C 0.205 3.795 15 C 0.001 3.999 16 N -0.385 5.385 17 O 0.108 5.892 18 C -0.027 4.027 19 C -0.197 4.197 20 C -0.051 4.051 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.036 4.036 24 H 0.263 0.737 25 H -0.018 1.018 26 H -0.014 1.014 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.413 0.587 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.057 -26.273 7.740 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.306 3.694 12 O -0.462 6.462 13 N -0.369 5.369 14 C 0.081 3.919 15 C -0.155 4.155 16 N -0.089 5.089 17 O 0.041 5.959 18 C -0.091 4.091 19 C -0.202 4.202 20 C -0.088 4.088 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.000 1.000 26 H 0.004 0.996 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.249 0.751 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.882 -26.013 6.404 29.726 hybrid contribution -0.120 1.135 0.260 1.171 sum 12.763 -24.878 6.664 28.743 Atomic orbital electron populations 1.70172 1.08303 1.27913 1.51343 1.26144 0.95739 1.03960 0.94586 0.85362 0.78049 0.77291 0.79475 1.18834 1.21293 1.18545 1.21684 0.94001 0.91615 1.51014 0.90622 1.18691 0.93670 0.92293 0.94868 1.21644 0.99387 0.89740 1.04949 1.21365 0.87833 0.86292 0.73936 1.90668 1.16440 1.88194 1.50872 1.45848 1.10798 1.04074 1.76173 1.19266 0.90934 0.78450 1.03274 1.22956 1.02031 1.00599 0.89946 1.74316 1.07280 1.02805 1.24491 1.84708 1.46885 1.40553 1.23722 1.24931 1.00756 1.00646 0.82815 1.20939 1.01726 0.99128 0.98385 1.20101 1.02298 1.00294 0.86146 1.21691 0.96987 0.96643 1.00385 1.21674 0.97115 1.02548 0.93939 1.20544 0.99182 0.95603 0.92030 0.92816 0.99977 0.99563 0.87364 0.87993 0.75080 0.91644 0.89004 0.90609 0.89928 0.91134 0.89365 0.87582 0.91383 0.86976 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.98 13.29 21.45 0.28 -59.69 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.39 4.26 29.85 0.13 2.52 16 10 C -0.12 -4.82 5.64 29.85 0.17 -4.65 16 11 C 0.52 20.66 7.83 87.66 0.69 21.34 16 12 O -0.58 -29.09 15.98 -3.04 -0.05 -29.14 16 13 N -0.71 -21.33 5.55 -466.79 -2.59 -23.92 16 14 C 0.21 5.81 6.25 85.63 0.54 6.35 16 15 C 0.00 0.03 6.69 43.17 0.29 0.32 16 16 N -0.38 -10.33 12.10 -48.63 -0.59 -10.92 16 17 O 0.11 2.38 11.20 78.82 0.88 3.27 16 18 C -0.03 -0.43 7.39 25.01 0.18 -0.25 16 19 C -0.20 -3.74 6.05 -20.24 -0.12 -3.86 16 20 C -0.05 -0.73 6.29 29.84 0.19 -0.54 16 21 C -0.12 -0.98 5.91 30.81 0.18 -0.79 16 22 C -0.12 -0.62 5.88 30.77 0.18 -0.44 16 23 C -0.04 -0.24 6.31 29.95 0.19 -0.06 16 24 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 25 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 26 H -0.01 -0.89 8.10 -2.38 -0.02 -0.91 16 27 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.41 10.05 8.46 -92.71 -0.78 9.27 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 35 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.07 0.46 8.12 -2.39 -0.02 0.44 16 38 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -79.11 330.41 3.54 -75.57 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.27 Total: 9.35 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 3.30 Total: -11.13 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -2.89 Total: -94.54 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: 0.83 Total: -25.87 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -79.11 3.54 -75.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293231014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal (2) G-P(sol) polarization free energy of solvation -79.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds