Wall clock time and date at job start Tue Mar 31 2020 00:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47122 * 240.00143 * 3 2 1 5 5 H 1.48494 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00321 * 3 2 1 7 7 C 1.37878 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99954 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.47440 * 111.00101 * 69.15533 * 10 9 7 12 12 C 1.54317 * 107.23634 * 123.26048 * 11 10 9 13 13 C 1.55145 * 103.01547 * 22.28209 * 12 11 10 14 14 C 1.47845 * 111.00280 * 190.00088 * 10 9 7 15 15 H 1.09002 * 110.37181 * 332.46417 * 14 10 9 16 16 C 1.50699 * 110.37376 * 94.69362 * 14 10 9 17 17 O 1.21282 * 119.99872 * 358.45046 * 16 14 10 18 18 N 1.34784 * 119.99944 * 178.44792 * 16 14 10 19 19 C 1.46498 * 119.99893 * 180.02562 * 18 16 14 20 20 C 1.50701 * 109.47020 * 179.97438 * 19 18 16 21 21 C 1.34507 * 125.78702 * 90.00253 * 20 19 18 22 22 C 1.41384 * 106.83937 * 179.97438 * 21 20 19 23 23 C 1.34514 * 106.84100 * 359.97438 * 22 21 20 24 24 O 1.34299 * 125.78673 * 269.68873 * 20 19 18 25 25 H 0.96996 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47416 * 60.00493 * 9 7 2 27 27 H 1.08999 * 109.47647 * 300.00219 * 9 7 2 28 28 H 1.09004 * 109.89306 * 242.66755 * 11 10 9 29 29 H 1.08999 * 109.88693 * 3.69593 * 11 10 9 30 30 H 1.08995 * 110.71240 * 140.66409 * 12 11 10 31 31 H 1.09000 * 110.70588 * 263.73039 * 12 11 10 32 32 H 1.09002 * 110.99072 * 206.25641 * 13 12 11 33 33 H 1.09006 * 110.98971 * 82.44426 * 13 12 11 34 34 H 0.96995 * 119.99904 * 359.97438 * 18 16 14 35 35 H 1.09004 * 109.47214 * 300.00065 * 19 18 16 36 36 H 1.09003 * 109.47204 * 59.99511 * 19 18 16 37 37 H 1.08004 * 126.58655 * 0.03025 * 21 20 19 38 38 H 1.07998 * 126.58104 * 179.97438 * 22 21 20 39 39 H 1.07994 * 125.78948 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9213 -3.6991 1.2858 12 6 2.6797 -5.1140 1.8526 13 6 2.3139 -5.9383 0.5902 14 6 1.5168 -4.9017 -0.2402 15 1 0.4848 -4.8500 0.1071 16 6 1.5593 -5.2547 -1.7047 17 8 2.0848 -4.5000 -2.4953 18 7 1.0134 -6.4092 -2.1357 19 6 1.0552 -6.7526 -3.5593 20 6 0.3822 -8.0836 -3.7749 21 6 -0.9235 -8.2713 -4.0379 22 6 -1.1190 -9.6657 -4.1666 23 6 0.0790 -10.2465 -3.9751 24 8 0.9855 -9.2830 -3.7430 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 3.9880 -3.5401 1.1278 29 1 2.5329 -2.9496 1.9754 30 1 3.5856 -5.5028 2.3175 31 1 1.8546 -5.1082 2.5648 32 1 1.6901 -6.7936 0.8497 33 1 3.2106 -6.2578 0.0591 34 1 0.5935 -7.0130 -1.5033 35 1 0.5361 -5.9852 -4.1336 36 1 2.0927 -6.8129 -3.8882 37 1 -1.6777 -7.5042 -4.1335 38 1 -2.0514 -10.1680 -4.3780 39 1 0.2788 -11.3073 -4.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298276475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:47 Heat of formation + Delta-G solvation = -10.294351 kcal Electronic energy + Delta-G solvation = -21327.104400 eV Core-core repulsion = 18043.613751 eV Total energy + Delta-G solvation = -3283.490649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80048 -39.62983 -37.47015 -34.78295 -33.18734 -33.02882 -30.99694 -30.60424 -28.85345 -26.26806 -25.85269 -22.80103 -21.98292 -21.67862 -20.78217 -20.33554 -19.44552 -17.78423 -16.84022 -16.39707 -16.02820 -15.69171 -15.18569 -14.94638 -14.73096 -14.26764 -13.82491 -13.40812 -13.06010 -12.99123 -12.90489 -12.66630 -12.45425 -12.08251 -11.94785 -11.86523 -11.31255 -10.99165 -10.74375 -10.62337 -10.55629 -10.18289 -10.11421 -9.75453 -9.43308 -9.14839 -8.92199 -8.71877 -8.36248 -7.22344 -5.95565 -3.95563 1.38982 2.33252 2.70860 3.13252 3.39691 3.42850 3.46724 3.50487 4.39520 4.49371 4.78507 4.80873 4.83381 4.95714 5.03875 5.27224 5.36502 5.39044 5.48020 5.56083 5.62732 5.70670 5.73265 5.84304 5.86615 6.00925 6.11406 6.23752 6.28473 6.52515 6.61352 6.71098 6.89308 7.18655 7.31339 7.68923 7.88823 8.10997 8.23306 8.55373 8.70681 9.11395 9.67780 11.15668 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.003749 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.496756 B = 7466.859102 C = 8142.061993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.505 5.505 11 C 0.055 3.945 12 C -0.142 4.142 13 C -0.116 4.116 14 C 0.055 3.945 15 H 0.073 0.927 16 C 0.523 3.477 17 O -0.501 6.501 18 N -0.740 5.740 19 C 0.204 3.796 20 C -0.029 4.029 21 C -0.189 4.189 22 C -0.217 4.217 23 C -0.036 4.036 24 O -0.172 6.172 25 H 0.261 0.739 26 H 0.029 0.971 27 H -0.008 1.008 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -21.196 -3.009 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.230 5.230 11 C -0.074 4.074 12 C -0.180 4.180 13 C -0.155 4.155 14 C -0.058 4.058 15 H 0.090 0.910 16 C 0.309 3.691 17 O -0.372 6.372 18 N -0.397 5.397 19 C 0.080 3.920 20 C -0.079 4.079 21 C -0.209 4.209 22 C -0.236 4.236 23 C -0.104 4.104 24 O -0.068 6.068 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.009 0.991 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.232 0.768 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.338 -20.374 -3.954 20.757 hybrid contribution -0.833 0.348 0.755 1.177 sum -1.171 -20.027 -3.199 20.314 Atomic orbital electron populations 1.69951 1.06045 1.26774 1.51410 1.24978 0.94874 0.99277 0.95559 0.86540 0.79412 0.82679 0.78664 1.20124 1.21435 1.20317 1.21082 0.93555 0.89756 1.49488 0.91905 1.19896 0.89926 0.87525 0.95812 1.63228 1.28459 1.00677 1.30622 1.22686 0.99598 0.94645 0.90422 1.22833 1.01366 0.96885 0.96938 1.22641 1.00011 0.96636 0.96173 1.22402 0.98779 0.93484 0.91141 0.90966 1.20752 0.77367 0.79867 0.91147 1.90727 1.41705 1.48615 1.56149 1.46121 1.62463 1.23328 1.07787 1.19515 1.01095 0.87288 0.84072 1.22437 0.92401 0.85883 1.07170 1.21749 0.95936 0.96972 1.06203 1.21884 0.99223 0.94193 1.08342 1.24097 0.87598 0.93838 1.04898 1.84053 1.38394 1.14750 1.69559 0.92976 0.95289 0.99058 0.91597 0.91699 0.91203 0.91640 0.91109 0.90666 0.76796 0.88419 0.89960 0.83075 0.83322 0.78039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.50 -14.69 8.63 -34.44 -0.30 -14.99 16 8 H 0.06 1.84 7.76 -52.49 -0.41 1.44 16 9 C 0.19 5.24 4.30 -4.98 -0.02 5.22 16 10 N -0.51 -11.42 4.33 -226.19 -0.98 -12.40 16 11 C 0.05 1.05 6.37 -2.84 -0.02 1.04 16 12 C -0.14 -2.04 6.94 -24.91 -0.17 -2.22 16 13 C -0.12 -1.61 6.46 -24.59 -0.16 -1.77 16 14 C 0.05 0.98 2.80 -67.34 -0.19 0.80 16 15 H 0.07 1.28 7.81 -51.93 -0.41 0.87 16 16 C 0.52 9.56 7.21 -10.98 -0.08 9.48 16 17 O -0.50 -11.59 16.49 5.56 0.09 -11.50 16 18 N -0.74 -9.99 5.51 -61.47 -0.34 -10.33 16 19 C 0.20 2.53 6.20 -5.19 -0.03 2.49 16 20 C -0.03 -0.32 6.69 -35.63 -0.24 -0.55 16 21 C -0.19 -1.90 10.81 -39.70 -0.43 -2.33 16 22 C -0.22 -1.87 10.91 -39.70 -0.43 -2.30 16 23 C -0.04 -0.29 12.09 29.42 0.36 0.06 16 24 O -0.17 -1.86 10.65 5.71 0.06 -1.80 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.03 0.86 8.08 -51.93 -0.42 0.45 16 27 H -0.01 -0.23 7.98 -51.93 -0.41 -0.65 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.36 7.30 -51.93 -0.38 0.98 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.40 4.38 8.46 -40.82 -0.35 4.03 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -35.10 332.77 -7.98 -43.07 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.73 Total: 0.88 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.81 Total: -3.58 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.58 Total: -49.50 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.15 Total: -13.31 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.10 -7.98 -43.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298276475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.778 kcal (2) G-P(sol) polarization free energy of solvation -35.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds