Wall clock time and date at job start Tue Mar 31 2020 00:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47122 * 240.00143 * 3 2 1 5 5 H 1.48494 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46833 * 120.00321 * 3 2 1 7 7 C 1.37878 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99954 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.47440 * 111.00101 * 69.15533 * 10 9 7 12 12 C 1.54317 * 107.23634 * 123.26048 * 11 10 9 13 13 C 1.55145 * 103.01547 * 22.28209 * 12 11 10 14 14 C 1.47845 * 111.00280 * 190.00088 * 10 9 7 15 15 H 1.09002 * 110.37181 * 332.46417 * 14 10 9 16 16 C 1.50699 * 110.37376 * 94.69362 * 14 10 9 17 17 O 1.21282 * 119.99872 * 358.45046 * 16 14 10 18 18 N 1.34784 * 119.99944 * 178.44792 * 16 14 10 19 19 C 1.46498 * 119.99893 * 180.02562 * 18 16 14 20 20 C 1.50701 * 109.47020 * 179.97438 * 19 18 16 21 21 C 1.34507 * 125.78702 * 90.00253 * 20 19 18 22 22 C 1.41384 * 106.83937 * 179.97438 * 21 20 19 23 23 C 1.34514 * 106.84100 * 359.97438 * 22 21 20 24 24 O 1.34299 * 125.78673 * 269.68873 * 20 19 18 25 25 H 0.96996 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47416 * 60.00493 * 9 7 2 27 27 H 1.08999 * 109.47647 * 300.00219 * 9 7 2 28 28 H 1.09004 * 109.89306 * 242.66755 * 11 10 9 29 29 H 1.08999 * 109.88693 * 3.69593 * 11 10 9 30 30 H 1.08995 * 110.71240 * 140.66409 * 12 11 10 31 31 H 1.09000 * 110.70588 * 263.73039 * 12 11 10 32 32 H 1.09002 * 110.99072 * 206.25641 * 13 12 11 33 33 H 1.09006 * 110.98971 * 82.44426 * 13 12 11 34 34 H 0.96995 * 119.99904 * 359.97438 * 18 16 14 35 35 H 1.09004 * 109.47214 * 300.00065 * 19 18 16 36 36 H 1.09003 * 109.47204 * 59.99511 * 19 18 16 37 37 H 1.08004 * 126.58655 * 0.03025 * 21 20 19 38 38 H 1.07998 * 126.58104 * 179.97438 * 22 21 20 39 39 H 1.07994 * 125.78948 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9213 -3.6991 1.2858 12 6 2.6797 -5.1140 1.8526 13 6 2.3139 -5.9383 0.5902 14 6 1.5168 -4.9017 -0.2402 15 1 0.4848 -4.8500 0.1071 16 6 1.5593 -5.2547 -1.7047 17 8 2.0848 -4.5000 -2.4953 18 7 1.0134 -6.4092 -2.1357 19 6 1.0552 -6.7526 -3.5593 20 6 0.3822 -8.0836 -3.7749 21 6 -0.9235 -8.2713 -4.0379 22 6 -1.1190 -9.6657 -4.1666 23 6 0.0790 -10.2465 -3.9751 24 8 0.9855 -9.2830 -3.7430 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 3.9880 -3.5401 1.1278 29 1 2.5329 -2.9496 1.9754 30 1 3.5856 -5.5028 2.3175 31 1 1.8546 -5.1082 2.5648 32 1 1.6901 -6.7936 0.8497 33 1 3.2106 -6.2578 0.0591 34 1 0.5935 -7.0130 -1.5033 35 1 0.5361 -5.9852 -4.1336 36 1 2.0927 -6.8129 -3.8882 37 1 -1.6777 -7.5042 -4.1335 38 1 -2.0514 -10.1680 -4.3780 39 1 0.2788 -11.3073 -4.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298276475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:46 Heat of formation + Delta-G solvation = -36.420331 kcal Electronic energy + Delta-G solvation = -21328.237308 eV Core-core repulsion = 18043.613751 eV Total energy + Delta-G solvation = -3284.623557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54335 -41.09080 -38.97402 -36.06692 -35.16324 -33.92495 -32.66698 -31.77747 -30.09707 -28.30230 -26.85327 -24.67130 -23.13906 -22.69991 -21.80120 -21.60601 -20.85142 -18.83484 -18.32667 -17.95254 -17.33696 -17.08898 -16.44207 -16.34050 -16.16758 -15.78504 -14.97502 -14.81119 -14.60035 -14.23796 -13.93412 -13.84105 -13.76935 -13.61503 -13.52772 -13.01343 -12.89536 -12.74800 -12.49944 -12.35968 -11.96446 -11.89370 -11.54196 -11.34995 -10.95916 -10.77948 -10.62349 -10.18908 -9.52792 -8.98995 -8.21779 -6.31475 0.61383 1.37681 1.42649 1.50232 1.61892 1.68479 1.93738 2.32573 2.40929 3.10087 3.35525 3.60800 3.68831 3.72873 4.09619 4.11137 4.13453 4.15697 4.31463 4.37410 4.52858 4.67072 4.81506 4.88522 4.90978 4.97742 5.00626 5.10454 5.12064 5.13400 5.20440 5.32544 5.38693 5.56562 5.63953 6.02055 6.16343 6.33122 6.41538 6.64896 6.83067 7.31576 7.37582 8.89239 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.003749 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.496756 B = 7466.859102 C = 8142.061993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.216 3.784 10 N -0.529 5.529 11 C 0.048 3.952 12 C -0.128 4.128 13 C -0.101 4.101 14 C 0.046 3.954 15 H 0.075 0.925 16 C 0.523 3.477 17 O -0.561 6.561 18 N -0.717 5.717 19 C 0.206 3.794 20 C -0.049 4.049 21 C -0.189 4.189 22 C -0.229 4.229 23 C -0.024 4.024 24 O -0.187 6.187 25 H 0.265 0.735 26 H -0.012 1.012 27 H -0.028 1.028 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 -23.569 -2.294 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.089 3.911 10 N -0.254 5.254 11 C -0.079 4.079 12 C -0.166 4.166 13 C -0.139 4.139 14 C -0.067 4.067 15 H 0.093 0.907 16 C 0.310 3.690 17 O -0.437 6.437 18 N -0.372 5.372 19 C 0.083 3.917 20 C -0.099 4.099 21 C -0.209 4.209 22 C -0.248 4.248 23 C -0.092 4.092 24 O -0.083 6.083 25 H 0.074 0.926 26 H 0.006 0.994 27 H -0.010 1.010 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.173 0.827 38 H 0.189 0.811 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.105 -22.816 -3.217 23.042 hybrid contribution -0.974 0.959 0.482 1.449 sum -1.079 -21.857 -2.735 22.054 Atomic orbital electron populations 1.70073 1.07625 1.27972 1.51813 1.25925 0.95849 1.03198 0.94739 0.85426 0.78219 0.77846 0.79066 1.19962 1.20346 1.18758 1.21393 0.93425 0.91337 1.50012 0.92597 1.19420 0.89811 0.89074 0.92761 1.63034 1.27959 1.01571 1.32813 1.22719 0.98712 0.97651 0.88853 1.22783 1.03391 0.93214 0.97228 1.22675 1.00118 0.96473 0.94662 1.22580 0.99329 0.92837 0.91907 0.90733 1.20863 0.76860 0.80371 0.90947 1.90698 1.44831 1.50799 1.57417 1.45885 1.60583 1.21880 1.08863 1.19416 1.00895 0.88466 0.82917 1.22039 0.92599 0.85528 1.09735 1.21989 0.95597 0.98245 1.05073 1.22205 1.00555 0.93394 1.08658 1.24938 0.86920 0.94890 1.02438 1.84040 1.39333 1.14966 1.69989 0.92623 0.99364 1.01034 0.91803 0.94169 0.88022 0.90447 0.86666 0.90430 0.74953 0.89184 0.90619 0.82714 0.81085 0.74175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 46.78 29.54 68.60 2.03 48.81 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.52 -32.01 8.63 25.60 0.22 -31.79 16 8 H 0.06 3.41 7.76 -2.91 -0.02 3.38 16 9 C 0.22 12.35 4.30 85.56 0.37 12.71 16 10 N -0.53 -24.76 4.33 -869.54 -3.77 -28.53 16 11 C 0.05 1.88 6.37 86.65 0.55 2.44 16 12 C -0.13 -3.36 6.94 31.78 0.22 -3.14 16 13 C -0.10 -2.52 6.46 31.98 0.21 -2.32 16 14 C 0.05 1.65 2.80 44.64 0.12 1.78 16 15 H 0.07 2.65 7.81 -2.39 -0.02 2.64 16 16 C 0.52 19.56 7.21 87.66 0.63 20.19 16 17 O -0.56 -27.31 16.49 -3.03 -0.05 -27.36 16 18 N -0.72 -19.13 5.51 -466.77 -2.57 -21.71 16 19 C 0.21 5.19 6.20 85.63 0.53 5.72 16 20 C -0.05 -1.04 6.69 24.83 0.17 -0.88 16 21 C -0.19 -3.56 10.81 22.19 0.24 -3.32 16 22 C -0.23 -3.32 10.91 22.19 0.24 -3.08 16 23 C -0.02 -0.32 12.09 66.97 0.81 0.49 16 24 O -0.19 -3.70 10.65 -2.49 -0.03 -3.72 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H -0.01 -0.75 8.08 -2.39 -0.02 -0.77 16 27 H -0.03 -1.65 7.98 -2.39 -0.02 -1.67 16 28 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.04 1.74 7.30 -2.39 -0.02 1.72 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.95 8.05 -2.38 -0.02 1.93 16 34 H 0.41 8.43 8.46 -92.71 -0.78 7.65 16 35 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.24 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -80.78 332.77 0.93 -79.84 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.26 Total: 11.70 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.78 Total: -0.69 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -6.05 Total: -108.58 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.08 Total: -31.09 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -80.78 0.93 -79.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298276475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.422 kcal (2) G-P(sol) polarization free energy of solvation -80.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds