Wall clock time and date at job start Tue Mar 31 2020 00:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48506 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47032 * 299.99588 * 3 2 1 6 6 H 1.48500 * 109.47381 * 60.00217 * 3 2 1 7 7 C 1.37873 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00425 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47128 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46766 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99776 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00138 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47505 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47556 * 179.97438 * 15 14 12 17 17 O 1.42894 * 109.47573 * 179.97438 * 16 15 14 18 18 C 1.35910 * 117.00621 * 180.02562 * 17 16 15 19 19 C 1.39138 * 120.47706 * 180.24394 * 18 17 16 20 20 C 1.38535 * 118.37336 * 180.24194 * 19 18 17 21 21 C 1.38262 * 119.22035 * 359.47237 * 20 19 18 22 22 N 1.31844 * 120.88422 * 0.30388 * 21 20 19 23 23 C 1.31834 * 121.78446 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46741 * 59.99761 * 9 7 2 26 26 H 1.08993 * 109.47166 * 300.00192 * 9 7 2 27 27 H 1.08999 * 109.46718 * 60.00365 * 10 9 7 28 28 H 1.09001 * 109.47383 * 300.00038 * 10 9 7 29 29 H 0.97001 * 120.00841 * 0.02562 * 11 10 9 30 30 H 1.09002 * 109.47071 * 59.99454 * 14 12 11 31 31 H 1.09001 * 109.46690 * 299.99605 * 14 12 11 32 32 H 1.08999 * 109.47453 * 59.98925 * 15 14 12 33 33 H 1.09006 * 109.46828 * 300.00037 * 15 14 12 34 34 H 1.09002 * 109.46851 * 59.99617 * 16 15 14 35 35 H 1.08998 * 109.47422 * 300.00280 * 16 15 14 36 36 H 1.07999 * 120.81005 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.39207 * 179.75678 * 20 19 18 38 38 H 1.08000 * 119.55595 * 180.28266 * 21 20 19 39 39 H 1.07997 * 119.66066 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1868 -6.0979 0.0003 13 8 3.3996 -6.0979 0.0007 14 6 1.4333 -7.4031 -0.0009 15 6 2.4275 -8.5660 -0.0008 16 6 1.6626 -9.8910 -0.0014 17 8 2.5912 -10.9771 -0.0018 18 6 2.0718 -12.2331 -0.0029 19 6 2.9102 -13.3435 0.0016 20 6 2.3342 -14.6034 -0.0049 21 6 0.9561 -14.7155 -0.0045 22 7 0.1898 -13.6426 -0.0040 23 6 0.6982 -12.4262 -0.0034 24 1 -0.4850 0.8401 0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6042 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.5429 -4.9308 -0.0008 30 1 0.8076 -7.4605 -0.8916 31 1 0.8058 -7.4610 0.8884 32 1 3.0537 -8.5087 0.8896 33 1 3.0548 -8.5078 -0.8903 34 1 1.0363 -9.9485 -0.8916 35 1 1.0356 -9.9490 0.8883 36 1 3.9838 -13.2259 0.0065 37 1 2.9543 -15.4876 -0.0055 38 1 0.5013 -15.6951 -0.0049 39 1 0.0383 -11.5712 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342625528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:52 Heat of formation + Delta-G solvation = -62.166527 kcal Electronic energy + Delta-G solvation = -19691.032020 eV Core-core repulsion = 16405.292025 eV Total energy + Delta-G solvation = -3285.739996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95204 -39.40524 -38.51090 -35.03005 -34.03320 -32.87626 -32.63068 -30.65786 -29.80815 -27.54739 -24.88834 -24.08103 -23.33963 -21.92194 -20.94738 -20.03113 -18.62319 -17.31872 -16.95502 -16.77750 -16.60736 -16.22550 -15.46882 -15.12942 -14.79394 -14.50467 -14.34162 -14.10051 -13.65804 -13.47241 -13.06083 -12.78000 -12.67298 -12.42498 -12.17601 -11.79841 -11.56701 -11.23002 -11.07223 -10.95380 -10.65020 -10.37177 -10.11327 -9.85264 -9.83178 -9.50316 -9.21468 -8.83670 -8.58417 -8.39213 -6.12340 -4.15200 0.71306 0.90056 2.64354 2.94506 3.26481 3.34117 3.38992 3.41266 3.67855 4.10459 4.26586 4.39180 4.45714 4.59082 4.59294 4.69750 4.76464 4.92550 5.08587 5.11468 5.15118 5.24892 5.25645 5.47162 5.57414 5.69168 5.84571 6.02031 6.14564 6.30662 6.31182 6.70213 6.86785 6.88185 7.48255 7.55904 7.57925 7.85856 7.96392 8.24515 8.60142 8.91083 9.49953 10.99249 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.068842 B = 0.001999 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.631719 B =14002.864331 C =14373.142680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.505 3.495 13 O -0.551 6.551 14 C -0.139 4.139 15 C -0.102 4.102 16 C 0.056 3.944 17 O -0.306 6.306 18 C 0.085 3.915 19 C -0.112 4.112 20 C -0.132 4.132 21 C 0.055 3.945 22 N -0.451 5.451 23 C 0.015 3.985 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -27.308 -0.004 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.373 5.373 12 C 0.290 3.710 13 O -0.429 6.429 14 C -0.179 4.179 15 C -0.140 4.140 16 C -0.019 4.019 17 O -0.218 6.218 18 C 0.037 3.963 19 C -0.138 4.138 20 C -0.152 4.152 21 C -0.103 4.103 22 N -0.160 5.160 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.311 -27.163 -0.004 27.165 hybrid contribution 0.550 1.142 -0.001 1.267 sum 0.861 -26.021 -0.005 26.036 Atomic orbital electron populations 1.69965 1.06089 1.26790 1.50448 1.25003 0.94908 0.99455 0.94971 0.86453 0.80165 0.83295 0.77631 1.19580 1.20916 1.20921 1.21094 0.93299 0.90388 1.51255 0.92188 1.19333 0.94212 0.91176 0.97852 1.21728 0.96064 0.81564 1.00798 1.46349 1.10565 1.06629 1.73710 1.20428 0.88241 0.85536 0.76782 1.90691 1.14067 1.87845 1.50306 1.21536 0.99120 0.92590 1.04682 1.21216 0.98003 0.89273 1.05534 1.22980 0.91948 0.85203 1.01783 1.86102 1.36155 1.11615 1.87929 1.20114 0.93408 0.85852 0.96949 1.21003 1.00806 0.90171 1.01853 1.22039 0.96490 0.97440 0.99195 1.22676 0.90616 0.97502 0.99518 1.67527 1.40514 0.98492 1.09484 1.22982 0.91865 0.96123 1.03352 0.92883 0.95932 0.95919 0.92559 0.92567 0.76834 0.88682 0.88682 0.89860 0.89852 0.91501 0.91492 0.83918 0.84064 0.82545 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.72 -11.93 5.56 -60.29 -0.33 -12.27 16 12 C 0.50 7.89 7.83 -10.98 -0.09 7.80 16 13 O -0.55 -10.89 15.98 5.56 0.09 -10.81 16 14 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 15 C -0.10 -1.04 4.87 -26.74 -0.13 -1.17 16 16 C 0.06 0.45 4.75 37.15 0.18 0.63 16 17 O -0.31 -3.12 10.15 -19.46 -0.20 -3.32 16 18 C 0.08 0.81 6.71 -39.07 -0.26 0.55 16 19 C -0.11 -0.90 10.13 -39.14 -0.40 -1.30 16 20 C -0.13 -0.86 10.11 -39.46 -0.40 -1.26 16 21 C 0.05 0.42 11.18 -17.54 -0.20 0.22 16 22 N -0.45 -4.53 10.35 -13.13 -0.14 -4.67 16 23 C 0.01 0.14 10.22 -17.38 -0.18 -0.04 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.40 5.53 8.47 -40.82 -0.35 5.18 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.07 0.45 7.68 -51.93 -0.40 0.05 16 35 H 0.07 0.45 7.68 -51.93 -0.40 0.05 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.16 1.17 6.32 -52.49 -0.33 0.84 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -33.60 338.38 -7.63 -41.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.66 Total: 0.30 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.21 Total: -6.63 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.27 Total: -42.11 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.11 Total: -14.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.60 -7.63 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342625528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.938 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds