Wall clock time and date at job start Tue Mar 31 2020 00:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48506 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47032 * 299.99588 * 3 2 1 6 6 H 1.48500 * 109.47381 * 60.00217 * 3 2 1 7 7 C 1.37873 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00425 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47128 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46766 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99776 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00138 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47505 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47556 * 179.97438 * 15 14 12 17 17 O 1.42894 * 109.47573 * 179.97438 * 16 15 14 18 18 C 1.35910 * 117.00621 * 180.02562 * 17 16 15 19 19 C 1.39138 * 120.47706 * 180.24394 * 18 17 16 20 20 C 1.38535 * 118.37336 * 180.24194 * 19 18 17 21 21 C 1.38262 * 119.22035 * 359.47237 * 20 19 18 22 22 N 1.31844 * 120.88422 * 0.30388 * 21 20 19 23 23 C 1.31834 * 121.78446 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99586 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46741 * 59.99761 * 9 7 2 26 26 H 1.08993 * 109.47166 * 300.00192 * 9 7 2 27 27 H 1.08999 * 109.46718 * 60.00365 * 10 9 7 28 28 H 1.09001 * 109.47383 * 300.00038 * 10 9 7 29 29 H 0.97001 * 120.00841 * 0.02562 * 11 10 9 30 30 H 1.09002 * 109.47071 * 59.99454 * 14 12 11 31 31 H 1.09001 * 109.46690 * 299.99605 * 14 12 11 32 32 H 1.08999 * 109.47453 * 59.98925 * 15 14 12 33 33 H 1.09006 * 109.46828 * 300.00037 * 15 14 12 34 34 H 1.09002 * 109.46851 * 59.99617 * 16 15 14 35 35 H 1.08998 * 109.47422 * 300.00280 * 16 15 14 36 36 H 1.07999 * 120.81005 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.39207 * 179.75678 * 20 19 18 38 38 H 1.08000 * 119.55595 * 180.28266 * 21 20 19 39 39 H 1.07997 * 119.66066 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1868 -6.0979 0.0003 13 8 3.3996 -6.0979 0.0007 14 6 1.4333 -7.4031 -0.0009 15 6 2.4275 -8.5660 -0.0008 16 6 1.6626 -9.8910 -0.0014 17 8 2.5912 -10.9771 -0.0018 18 6 2.0718 -12.2331 -0.0029 19 6 2.9102 -13.3435 0.0016 20 6 2.3342 -14.6034 -0.0049 21 6 0.9561 -14.7155 -0.0045 22 7 0.1898 -13.6426 -0.0040 23 6 0.6982 -12.4262 -0.0034 24 1 -0.4850 0.8401 0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6042 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.5429 -4.9308 -0.0008 30 1 0.8076 -7.4605 -0.8916 31 1 0.8058 -7.4610 0.8884 32 1 3.0537 -8.5087 0.8896 33 1 3.0548 -8.5078 -0.8903 34 1 1.0363 -9.9485 -0.8916 35 1 1.0356 -9.9490 0.8883 36 1 3.9838 -13.2259 0.0065 37 1 2.9543 -15.4876 -0.0055 38 1 0.5013 -15.6951 -0.0049 39 1 0.0383 -11.5712 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342625528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:51 Heat of formation + Delta-G solvation = -85.350965 kcal Electronic energy + Delta-G solvation = -19692.037373 eV Core-core repulsion = 16405.292025 eV Total energy + Delta-G solvation = -3286.745348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56544 -40.69753 -39.19174 -36.65756 -34.93534 -34.80875 -33.24597 -31.72501 -31.12451 -28.55527 -26.55779 -24.85764 -24.05396 -23.04509 -22.43751 -21.25860 -19.30508 -18.60969 -18.08475 -17.53952 -17.50276 -17.36759 -16.62687 -16.60188 -16.40061 -15.48119 -15.35330 -14.98578 -14.71847 -14.40847 -14.27120 -13.94783 -13.94092 -13.31805 -13.21641 -12.98099 -12.96801 -12.54045 -12.52042 -12.32063 -12.23139 -11.69498 -11.67339 -11.45230 -10.83120 -10.67860 -10.61760 -10.43836 -9.99917 -9.45661 -8.25403 -6.35626 0.14777 0.29641 1.40047 1.41306 1.54140 1.69516 1.94175 2.35588 2.53725 2.82603 3.09402 3.55612 3.65005 3.74668 3.91559 3.93516 4.05293 4.10728 4.28533 4.36694 4.42172 4.50582 4.51039 4.56272 4.65810 4.70504 4.85658 5.01015 5.05230 5.15378 5.21682 5.31762 5.50603 5.58112 5.59631 5.78568 6.15881 6.25419 6.66632 6.77954 6.97164 7.32838 7.33881 8.86444 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.068842 B = 0.001999 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.631719 B =14002.864331 C =14373.142680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.719 5.719 12 C 0.501 3.499 13 O -0.596 6.596 14 C -0.125 4.125 15 C -0.098 4.098 16 C 0.058 3.942 17 O -0.326 6.326 18 C 0.067 3.933 19 C -0.124 4.124 20 C -0.123 4.123 21 C 0.047 3.953 22 N -0.480 5.480 23 C 0.003 3.997 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.413 0.587 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -28.606 -0.005 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.370 5.370 12 C 0.290 3.710 13 O -0.478 6.478 14 C -0.164 4.164 15 C -0.136 4.136 16 C -0.016 4.016 17 O -0.239 6.239 18 C 0.020 3.980 19 C -0.151 4.151 20 C -0.143 4.143 21 C -0.111 4.111 22 N -0.190 5.190 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.249 0.751 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.170 0.830 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.159 -28.481 -0.005 28.482 hybrid contribution 0.704 1.454 -0.001 1.616 sum 0.545 -27.027 -0.006 27.033 Atomic orbital electron populations 1.70058 1.07461 1.27935 1.51041 1.25860 0.95818 1.03056 0.94437 0.85405 0.78918 0.78837 0.77930 1.19104 1.20181 1.20189 1.21512 0.93551 0.92083 1.51464 0.92487 1.19143 0.94237 0.91717 0.96467 1.21188 0.95064 0.82681 0.99568 1.46174 1.11234 1.05576 1.73999 1.21435 0.87956 0.86765 0.74881 1.90674 1.16433 1.88541 1.52129 1.21536 0.98715 0.88430 1.07733 1.21113 0.97960 0.90859 1.03676 1.22988 0.91478 0.83571 1.03606 1.86058 1.37178 1.12284 1.88370 1.20297 0.93879 0.85830 0.98018 1.21345 1.01455 0.90569 1.01696 1.22390 0.96464 0.97976 0.97445 1.23206 0.91281 0.98019 0.98586 1.67546 1.41558 0.99222 1.10639 1.23181 0.92054 0.96540 1.03634 0.92526 0.97167 0.97153 0.93833 0.93842 0.75069 0.85471 0.85466 0.91813 0.91807 0.89645 0.89634 0.82963 0.80797 0.80099 0.81138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.80 13.29 21.45 0.28 -53.51 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.55 -30.54 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.08 5.09 29.85 0.15 1.24 16 10 C 0.14 5.90 5.61 86.38 0.48 6.39 16 11 N -0.72 -23.32 5.56 -463.06 -2.57 -25.89 16 12 C 0.50 15.29 7.83 87.66 0.69 15.98 16 13 O -0.60 -23.94 15.98 -3.03 -0.05 -23.99 16 14 C -0.12 -2.18 5.70 29.85 0.17 -2.01 16 15 C -0.10 -1.91 4.87 30.59 0.15 -1.76 16 16 C 0.06 0.84 4.75 71.98 0.34 1.19 16 17 O -0.33 -6.43 10.15 -92.53 -0.94 -7.37 16 18 C 0.07 1.22 6.71 22.60 0.15 1.37 16 19 C -0.12 -1.85 10.13 22.56 0.23 -1.62 16 20 C -0.12 -1.35 10.11 22.35 0.23 -1.12 16 21 C 0.05 0.63 11.18 84.70 0.95 1.57 16 22 N -0.48 -9.03 10.35 -195.44 -2.02 -11.06 16 23 C 0.00 0.05 10.22 84.81 0.87 0.92 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.41 10.93 8.47 -92.71 -0.79 10.14 16 30 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 33 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 34 H 0.09 0.93 7.68 -2.39 -0.02 0.91 16 35 H 0.09 0.93 7.68 -2.39 -0.02 0.91 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.17 2.27 6.32 -2.91 -0.02 2.25 16 Total: -1.00 -73.96 338.38 2.09 -71.87 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.26 Total: 11.71 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.10 Total: -7.29 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -4.31 Total: -90.46 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.99 Total: -31.36 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -73.96 2.09 -71.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342625528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.476 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds