Wall clock time and date at job start Tue Mar 31 2020 00:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99779 * 2 1 4 4 H 1.48508 * 109.47142 * 269.99937 * 3 2 1 5 5 H 1.48501 * 109.47239 * 29.99394 * 3 2 1 6 6 H 1.48493 * 109.47330 * 150.00029 * 3 2 1 7 7 C 1.38799 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00493 * 197.35843 * 7 2 1 9 9 N 1.36946 * 119.99931 * 17.35295 * 7 2 1 10 10 C 1.46928 * 120.62788 * 27.67612 * 9 7 2 11 11 C 1.53189 * 108.77854 * 126.43097 * 10 9 7 12 12 C 1.53048 * 109.30981 * 54.63137 * 11 10 9 13 13 C 1.53037 * 109.53783 * 298.63374 * 12 11 10 14 14 H 1.08993 * 109.50167 * 301.38410 * 13 12 11 15 15 C 1.53002 * 109.49645 * 181.31695 * 13 12 11 16 16 N 1.46495 * 109.47389 * 175.06577 * 15 13 12 17 17 C 1.34772 * 120.00328 * 180.02562 * 16 15 13 18 18 O 1.21618 * 120.00064 * 359.97438 * 17 16 15 19 19 C 1.47381 * 120.00287 * 180.02562 * 17 16 15 20 20 C 1.47022 * 127.19376 * 179.97438 * 19 17 16 21 21 C 1.34180 * 105.95307 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.12568 * 0.02562 * 21 20 19 23 23 C 1.33653 * 110.90887 * 359.75855 * 22 21 20 24 24 C 1.46935 * 120.60462 * 207.69021 * 9 7 2 25 25 H 0.97003 * 120.00220 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.58533 * 6.63756 * 10 9 7 27 27 H 1.09006 * 109.58266 * 246.22168 * 10 9 7 28 28 H 1.08996 * 109.49550 * 294.68451 * 11 10 9 29 29 H 1.08999 * 109.49663 * 174.58121 * 11 10 9 30 30 H 1.09003 * 109.45783 * 178.61240 * 12 11 10 31 31 H 1.09001 * 109.44741 * 58.65023 * 12 11 10 32 32 H 1.09000 * 109.47355 * 55.06437 * 15 13 12 33 33 H 1.09006 * 109.47378 * 295.07108 * 15 13 12 34 34 H 0.97003 * 120.00049 * 0.02562 * 16 15 13 35 35 H 1.08001 * 127.02023 * 359.93839 * 20 19 17 36 36 H 1.07997 * 125.43618 * 179.97438 * 21 20 19 37 37 H 1.07999 * 125.80372 * 180.26668 * 23 22 21 38 38 H 1.09004 * 109.55816 * 113.76736 * 24 9 7 39 39 H 1.08998 * 109.61953 * 353.34326 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0535 -1.2232 0.2796 9 7 1.3724 -2.3612 -0.3527 10 6 0.2278 -2.3350 -1.2735 11 6 0.5002 -3.3060 -2.4266 12 6 0.8179 -4.6908 -1.8578 13 6 2.0737 -4.6107 -0.9869 14 1 2.9076 -4.2419 -1.5840 15 6 2.4092 -6.0017 -0.4453 16 7 3.6749 -5.9472 0.2904 17 6 4.1723 -7.0631 0.8593 18 8 3.5702 -8.1154 0.7624 19 6 5.4454 -7.0082 1.5999 20 6 6.1278 -8.1199 2.2780 21 6 7.2437 -7.5982 2.8099 22 8 7.2985 -6.2889 2.5200 23 6 6.2392 -5.9161 1.7953 24 6 1.8199 -3.6543 0.1826 25 1 -0.4850 0.8401 -0.0004 26 1 0.0986 -1.3269 -1.6674 27 1 -0.6745 -2.6408 -0.7437 28 1 1.3489 -2.9489 -3.0100 29 1 -0.3807 -3.3684 -3.0655 30 1 0.9880 -5.3896 -2.6769 31 1 -0.0213 -5.0364 -1.2541 32 1 2.5013 -6.7023 -1.2753 33 1 1.6144 -6.3329 0.2231 34 1 4.1550 -5.1079 0.3680 35 1 5.7979 -9.1466 2.3366 36 1 7.9799 -8.1445 3.3808 37 1 6.0439 -4.9193 1.4282 38 1 1.0477 -4.0675 0.8316 39 1 2.7410 -3.5170 0.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359706190.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:00 Heat of formation + Delta-G solvation = -31.792600 kcal Electronic energy + Delta-G solvation = -21428.201006 eV Core-core repulsion = 18143.778123 eV Total energy + Delta-G solvation = -3284.422883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.45312 -40.64450 -39.27681 -36.27289 -34.73312 -33.80892 -32.29545 -32.03957 -30.58141 -27.29184 -26.96717 -24.42303 -23.74824 -22.52555 -22.27435 -21.24573 -20.53006 -19.34645 -18.59925 -17.24405 -17.11485 -16.87525 -16.67598 -16.37779 -15.78635 -15.61485 -15.32494 -15.01150 -14.53271 -14.43138 -14.02315 -13.83700 -13.73202 -13.59758 -13.31936 -13.00817 -12.85505 -12.49977 -12.25447 -11.94432 -11.81662 -11.58029 -11.40722 -11.12806 -11.03471 -10.84651 -10.51842 -10.13748 -9.71408 -8.67280 -7.85141 -5.30919 0.36723 1.15211 1.48932 1.50600 1.58764 2.01827 2.21806 2.33295 2.52676 3.29840 3.58795 3.66709 3.79883 3.99437 4.01593 4.04012 4.16554 4.41503 4.54429 4.57943 4.64261 4.76315 4.78297 4.88302 4.90864 5.01609 5.03568 5.11738 5.22653 5.33410 5.35048 5.38235 5.46969 5.58544 5.68363 5.79469 6.00820 6.40152 6.51204 7.16329 7.16743 7.87745 8.39876 9.21217 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.004329 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.372728 B = 6466.230847 C = 7788.478175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.261 4.261 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.080 0.920 15 C 0.138 3.862 16 N -0.712 5.712 17 C 0.583 3.417 18 O -0.587 6.587 19 C -0.269 4.269 20 C -0.197 4.197 21 C -0.023 4.023 22 O -0.177 6.177 23 C 0.041 3.959 24 C 0.151 3.849 25 H 0.248 0.752 26 H 0.052 0.948 27 H -0.009 1.009 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.156 0.844 36 H 0.249 0.751 37 H 0.241 0.759 38 H 0.004 0.996 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.367 -12.581 0.938 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.391 4.391 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.099 0.901 15 C 0.014 3.986 16 N -0.363 5.363 17 C 0.373 3.627 18 O -0.469 6.469 19 C -0.274 4.274 20 C -0.217 4.217 21 C -0.088 4.088 22 O -0.072 6.072 23 C -0.030 4.030 24 C 0.026 3.974 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.174 0.826 36 H 0.265 0.735 37 H 0.257 0.743 38 H 0.022 0.978 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.068 -12.989 0.978 18.451 hybrid contribution -0.309 1.258 0.111 1.300 sum 12.759 -11.731 1.089 17.366 Atomic orbital electron populations 1.70207 1.06840 1.25737 1.55590 1.25796 0.95943 1.01571 1.01430 0.85287 0.78233 0.79579 0.77480 1.21343 1.22684 1.18852 1.19587 0.93195 0.85861 1.40434 0.90790 1.44325 1.35816 1.02162 1.50926 1.20636 0.87666 0.97828 0.89210 1.21996 1.00973 0.95887 0.98007 1.21344 0.96536 0.96802 0.98917 1.21718 0.99192 0.93219 0.97847 0.90133 1.21301 0.84746 0.96994 0.95574 1.45829 1.24610 1.11359 1.54493 1.17626 0.84002 0.83270 0.77848 1.90738 1.62176 1.31408 1.62623 1.21571 0.98916 0.96628 1.10260 1.22962 0.96329 1.00108 1.02273 1.24648 1.00632 0.80444 1.03121 1.83845 1.40855 1.26885 1.55603 1.25014 0.84770 1.00041 0.93146 1.21040 0.97204 0.85717 0.93457 0.94272 0.92991 0.99098 0.92686 0.91340 0.90136 0.92762 0.90871 0.92552 0.75243 0.82601 0.73503 0.74330 0.97808 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.03 11.19 21.65 0.24 -54.79 16 2 C -0.05 -2.84 4.91 84.86 0.42 -2.43 16 3 Si 0.97 43.58 29.59 68.60 2.03 45.61 16 4 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.26 -13.70 9.58 84.03 0.81 -12.89 16 8 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 9 N -0.61 -29.33 3.00 -699.07 -2.09 -31.42 16 10 C 0.17 8.17 5.31 86.36 0.46 8.63 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.44 16 12 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 13 C -0.10 -2.98 2.37 -10.72 -0.03 -3.01 16 14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.14 3.77 5.07 86.38 0.44 4.20 16 16 N -0.71 -17.95 5.32 -466.41 -2.48 -20.43 16 17 C 0.58 16.92 7.81 86.65 0.68 17.60 16 18 O -0.59 -21.69 16.98 -4.09 -0.07 -21.76 16 19 C -0.27 -6.31 6.31 -18.99 -0.12 -6.43 16 20 C -0.20 -4.03 11.01 23.65 0.26 -3.77 16 21 C -0.02 -0.33 12.03 66.89 0.80 0.48 16 22 O -0.18 -2.96 10.52 4.50 0.05 -2.91 16 23 C 0.04 0.70 11.61 67.39 0.78 1.49 16 24 C 0.15 5.82 5.60 86.36 0.48 6.30 16 25 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 27 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.41 8.47 6.67 -92.71 -0.62 7.85 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.25 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.24 2.46 7.47 -2.91 -0.02 2.44 16 38 H 0.00 0.16 8.14 -2.38 -0.02 0.15 16 39 H 0.06 2.14 7.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.05 323.70 3.43 -68.61 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.43 Total: 14.15 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.33 Total: 2.93 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -4.33 Total: -106.64 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.02 Total: -24.67 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.05 3.43 -68.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359706190.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.822 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds